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	Supplemental Table 1
	Supplemental Table 2
	Supplemental Table 3
	Supplemental Table 4
	Supplemental Information ISIS splits

	Max Planck Institute for Molecular Genetics
	Deutsche Krebshilfe

Jaeger et al.
Gene expression signatures in melanoma tissues

No. of sample	Tumor no. in text	Melanoma subtype	Vertical tumor thickness (mm) of whole tumor	Vertical tumor thickness (mm) of biopsy	Clark level	Clinical stage*)
1.	NM1	NMM	2.90	2.55	L IV	IIA
2.	NM2	NMM	11.00	9.30	LV	IIC
3.	NM3	NMM	4.20	4.10	LIV	IIB
4.	NM4	NMM	6.00	5.73	LIV	IIB
5.	NM5	NMM	4.80	4.77	LIV	IIB
6.	SSM1	SSM	0.45	0.42	LII	IA
7.	SSM2	SSM	0.38	0.35	LIII	IA
8.	SSM3	SSM	0.80	0.72	LIII	IA
9.	SSM4	SSM	0.93	0.75	LIII	IA
10.	SSM5	SSM	0.77	0.72	LIII	IA
11.	SSM6	SSM	5.67	5.40	LV	IIB
12.	SSM7	SSM	0.60	0.60	LIII	IA
13.	SSM8	SSM	in situ	in situ	Ø	0
14.	SSM9	SSM	0.95	0.90	LIV	IA
14.	SSM10	SSM	1.50	1.50	LIII	IB
16.	SSM11	SSM	0.88	0.85	LIII	IA
17.	SSM12	SSM	0.41	0.41	LIII	IA
18.	SSM13	SSM	5.40	5.10	LIV	IIB
19.	ALM1	ALM	2.50	2.32	LIV	IIA

 

Supplementary Table 1 List of melanoma samples from primary melanomas analysed in the presented study. Nineteen tissue biopsies of different melanoma subtypes from 19 different patients were used for laser-capture micodissection of melanoma cells and DNA microarray analyses. Vertical tumor thicknesses of whole tumors reached from 0.38-11.00 mm, including one in situ melanoma. Vertical tumor thicknesses of biospies reached from 0.35-9.30 mm, including one in situ melanoma. *) Classification of clinical stage was done according to Balch CM, Buzaid AC, Atkins MB, Cascinelli N, Coit DG, Fleming ID, Houghton Jr. A, Kirkwood JM, Mihm MF, Morton DL, Reintgen D, Ross MI, Sober A, Soong SJ, Thompson JA, Thompson JF, Gershenwald JE, McMasters KM. 2000. A new American Joint Committee on Cancer staging system for cutaneous melanoma. Cancer 88:1484-1491