GO:0006457


GO:0006457

protein folding
(annotated genes)

Biological
Process

Parent node

This leaf node contains 94 genes

The following 74 of these are used in classification:

 SymbolGenenameNORMAL scoreSQUAMOUS score
37720_atHSPD1 heat shock 60kDa protein 1 (chaperonin)-0.92890.7519
33800_atADCY9 adenylate cyclase 90.8546-0.6918
40417_atCCT5 chaperonin containing TCP1, subunit 5 (epsilon)-0.83270.6741
40774_atCCT3 chaperonin containing TCP1, subunit 3 (gamma)-0.82460.6675
38729_atFKBP4 FK506 binding protein 4, 59kDa-0.79320.6421
36194_atLRPAP1 low density lipoprotein receptor-related protein associated protein 10.7245-0.5865
33137_atLTBP4 latent transforming growth factor beta binding protein 40.7139-0.5779
35759_atCCT2 chaperonin containing TCP1, subunit 2 (beta)-0.6690.5416
34365_atPPIE peptidylprolyl isomerase E (cyclophilin E)0.616-0.4987
33984_atHSPCB heat shock 90kDa protein 1, beta-0.61010.4939
32316_s_atHSPCA heat shock 90kDa protein 1, alpha-0.58940.4771
1468_atTRAP1 heat shock protein 75-0.57870.4685
34791_atTCP1 t-complex 1-0.5590.4525
1161_atHSPCB heat shock 90kDa protein 1, beta-0.55420.4486
40840_atPPIF peptidylprolyl isomerase F (cyclophilin F)-0.53450.4327
38011_atC19orf2 chromosome 19 open reading frame 2-0.53320.4317
1817_atPFDN5 prefoldin 50.5022-0.4065
38720_atCCT7 chaperonin containing TCP1, subunit 7 (eta)-0.49560.4012
38416_atCCT6A chaperonin containing TCP1, subunit 6A (zeta 1)-0.48180.3901
40354_atAPG-1 heat shock protein (hsp110 family)-0.47750.3865
33884_s_atUBE4B ubiquitination factor E4B (UFD2 homolog, yeast)-0.42610.345
38352_atPPIH peptidyl prolyl isomerase H (cyclophilin H)-0.36350.2942
1179_atHSPA8 heat shock 70kDa protein 8-0.33410.2705
41003_atPFDN4 prefoldin 40.3123-0.2528
37385_atPPIG peptidyl-prolyl isomerase G (cyclophilin G)-0.29170.2361
37632_s_atZRF1 zuotin related factor 1-0.28110.2275
355_s_atFKBP1B FK506 binding protein 1B, 12.6 kDa0.2718-0.22
442_atTRA1 tumor rejection antigen (gp96) 1-0.27060.2191
1640_atST13 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)-0.25720.2082
40053_atTXNDC4 thioredoxin domain containing 4 (endoplasmic reticulum)0.2526-0.2045
31826_atKIAA0674 KIAA0674 protein0.2492-0.2018
40637_atHSPA8 heat shock 70kDa protein 8-0.24240.1962
37453_atCLPX ClpX caseinolytic protease X homolog (E. coli)-0.24230.1962
39767_atCCT8 chaperonin containing TCP1, subunit 8 (theta)-0.23080.1869
34841_atCLN3 ceroid-lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)-0.22960.1858
497_atCLN3 ceroid-lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)0.2168-0.1755
33667_atPPIA peptidylprolyl isomerase A (cyclophilin A)-0.20970.1697
41638_atKIAA0073 KIAA0073 protein0.2055-0.1664
36586_atAIP aryl hydrocarbon receptor interacting protein0.1938-0.1569
36463_atBAG5 BCL2-associated athanogene 5-0.19050.1542
39464_atHSPA8 heat shock 70kDa protein 80.1884-0.1525
33188_atPPIL2 peptidylprolyl isomerase (cyclophilin)-like 20.1765-0.1429
35466_atDNAJB12 DnaJ (Hsp40) homolog, subfamily B, member 120.1738-0.1407
35467_g_atDNAJB12 DnaJ (Hsp40) homolog, subfamily B, member 120.1619-0.1311
39118_atDNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 10.1593-0.129
37422_atPPIC peptidylprolyl isomerase C (cyclophilin C)-0.15870.1284
35799_atDNAJB9 DnaJ (Hsp40) homolog, subfamily B, member 90.1583-0.1282
32788_atRANBP2 RAN binding protein 2-0.15240.1233
37365_atDNAJB2 DnaJ (Hsp40) homolog, subfamily B, member 20.144-0.1165
34366_g_atPPIE peptidylprolyl isomerase E (cyclophilin E)-0.13760.1114
38632_atDNAJB5 DnaJ (Hsp40) homolog, subfamily B, member 50.1336-0.1082
37044_atPDIR for protein disulfide isomerase-related-0.12350.1
752_s_atDNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1-0.11570.0936
32234_atDYT1 dystonia 1, torsion (autosomal dominant; torsin A)-0.10750.087
39398_s_atTBCD tubulin-specific chaperone d0.1024-0.0829
34070_s_atPDIP protein disulfide isomerase, pancreatic0.0909-0.0736
35963_atHKE2 HLA class II region expressed gene KE2-0.08970.0726
38137_atFKBP6 FK506 binding protein 6, 36kDa0.0893-0.0723
35269_atHSPBP1 hsp70-interacting protein-0.08570.0694
34349_atSEC63 SEC63-like (S. cerevisiae)-0.08390.0679
33312_atCRYAA crystallin, alpha A0.083-0.0672
35468_atDNAJB12 DnaJ (Hsp40) homolog, subfamily B, member 120.0682-0.0552
40421_atPIN1 protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 10.0666-0.054
37321_atTTC1 tetratricopeptide repeat domain 10.0659-0.0533
38813_atTSC2 tuberous sclerosis 20.0648-0.0524
948_s_atPPID peptidylprolyl isomerase D (cyclophilin D)-0.060.0485
33313_g_atCRYAA crystallin, alpha A-0.05790.0469
36541_atDNAJA3 DnaJ (Hsp40) homolog, subfamily A, member 30.0261-0.0212
39786_atGRPEL1 GrpE-like 1, mitochondrial (E. coli)-0.0260.021
33311_atCRYAA crystallin, alpha A0.0198-0.016
33985_s_atHSPCB heat shock 90kDa protein 1, beta0.0167-0.0135
33409_atFKBP2 FK506 binding protein 2, 13kDa0.0125-0.0101
158_atDNAJB4 DnaJ (Hsp40) homolog, subfamily B, member 4-0.00470.0038
32243_g_atCRYAB crystallin, alpha B5e-04-4e-04

Performance on training data

 SensitivitySpecificity
NORMAL0.941181
SQUAMOUS10.94118

Performance on test data

 SensitivitySpecificity
NORMAL0.941181
SQUAMOUS10.94118

Predictions

 ClassNORMALSQUAMOUSPredictionn
CL2001031606AA (testset)SQUAMOUS01 SQUAMOUS
CL2001031620AA (testset)SQUAMOUS01 SQUAMOUS
CL2001031621AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032122AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032129AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032144AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032153AA (testset)SQUAMOUS7e-050.99993 SQUAMOUS
CL2001032207AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032209AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032218AA (testset)SQUAMOUS0.000150.99985 SQUAMOUS
CL2001032222AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032231AA (testset)SQUAMOUS0.413870.58613 SQUAMOUS
CL2001032239AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032240AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032305AA (testset)SQUAMOUS1e-040.9999 SQUAMOUS
CL2001032608AA (testset)SQUAMOUS0.051230.94877 SQUAMOUS
CL2001032627AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032644AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032719AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032732AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032853AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032010AA (testset)NORMAL10 NORMAL
CL2001032041AA (testset)NORMAL10 NORMAL
CL2001032043AA (testset)NORMAL10 NORMAL
CL2001032045AA (testset)NORMAL10 NORMAL
CL2001032046AA (testset)NORMAL10 NORMAL
CL2001032102AA (testset)NORMAL10 NORMAL
CL2001032128AA (testset)NORMAL10 NORMAL
CL2001032147AA (testset)NORMAL10 NORMAL
CL2001032202AA (testset)NORMAL10 NORMAL
CL2001032206AA (testset)NORMAL10 NORMAL
CL2001032220AA (testset)NORMAL10 NORMAL
CL2001032256AA (testset)NORMAL0.384570.61543 SQUAMOUS
CL2001032304AA (testset)NORMAL0.988280.01172 NORMAL
CL2001032718AA (testset)NORMAL10 NORMAL
CL2001032724AA (testset)NORMAL10 NORMAL
CL2001032725AA (testset)NORMAL10 NORMAL
CL2001032727AA (testset)NORMAL10 NORMAL

 


Generated by StAM on Tue Sep 7 18:16:09 2004