GO:0006355

GO:0006355

regulation of transcription, DNA-dependent (annotated genes)

Biological Process

Parent node

GO:0006355	regulation of transcription, DNA-dependent

This leaf node contains 1136 genes

The following 3 of these are used in classification:

	Symbol	Genename	SQUAMOUS score	other score
31791_at	TP73L	tumor protein p73-like	1.022	-0.1182
33109_f_at	SOX2	SRY (sex determining region Y)-box 2	0.099	-0.0115
33108_i_at	SOX2	SRY (sex determining region Y)-box 2	0.0605	-0.007

Performance on training data

• Error rate: 0.02963
• Performance: 0.21878
• Redundancy: 2.66872

	Sensitivity	Specificity
SQUAMOUS	0.85714	0.98347
other	0.98347	0.85714

Performance on test data

• Error rate: 0.01471
• Performance: 0.19123
• Redundancy: 2.88063

	Sensitivity	Specificity
SQUAMOUS	0.85714	1
other	1	0.85714

Predictions

	Class	SQUAMOUS	other	Predictionn
CL2001031606AA (testset)	SQUAMOUS	0.02648	0.97352	other
CL2001031607AA	other	0.05969	0.94031	other
CL2001031608AA	other	0.0343	0.9657	other
CL2001031609AA (testset)	other	0.04575	0.95425	other
CL2001031611AA	other	0.03169	0.96831	other
CL2001031612AA (testset)	other	0.03279	0.96721	other
CL2001031613AA (testset)	other	0.03881	0.96119	other
CL2001031615AA (testset)	other	0.03221	0.96779	other
CL2001031616AA	other	0.0358	0.9642	other
CL2001031618AA	other	0.03858	0.96142	other
CL2001031620AA	SQUAMOUS	0.8878	0.1122	SQUAMOUS
CL2001031621AA	SQUAMOUS	0.94912	0.05088	SQUAMOUS
CL2001031622AA	other	0.03504	0.96496	other
CL2001031625AA	other	0.02799	0.97201	other
CL2001031627AA (testset)	other	0.039	0.961	other
CL2001031628AA	other	0.02708	0.97292	other
CL2001031629AA	other	0.40031	0.59969	other
CL2001031630AA	other	0.03403	0.96597	other
CL2001031631AA (testset)	other	0.02374	0.97626	other
CL2001031632AA	other	0.03243	0.96757	other
CL2001031634AA	other	0.03348	0.96652	other
CL2001031635AA (testset)	other	0.02561	0.97439	other
CL2001031636AA (testset)	other	0.02697	0.97303	other
CL2001032002AA	other	0.04561	0.95439	other
CL2001032005AA	other	0.02882	0.97118	other
CL2001032008AA	other	0.04187	0.95813	other
CL2001032009AA	other	0.02575	0.97425	other
CL2001032010AA	other	0.0221	0.9779	other
CL2001032011AA	other	0.09721	0.90279	other
CL2001032012AA	other	0.02714	0.97286	other
CL2001032013AA	other	0.03583	0.96417	other
CL2001032015AA (testset)	other	0.05966	0.94034	other
CL2001032016AA (testset)	other	0.02503	0.97497	other
CL2001032019AA	other	0.02805	0.97195	other
CL2001032020AA (testset)	other	0.02461	0.97539	other
CL2001032025AA (testset)	other	0.04109	0.95891	other
CL2001032026AA	other	0.03538	0.96462	other
CL2001032027AA (testset)	other	0.03183	0.96817	other
CL2001032030AA (testset)	other	0.03064	0.96936	other
CL2001032031AA (testset)	other	0.03366	0.96634	other
CL2001032032AA	other	0.23367	0.76633	other
CL2001032034AA (testset)	other	0.03385	0.96615	other
CL2001032036AA	other	0.02181	0.97819	other
CL2001032041AA (testset)	other	0.03613	0.96387	other
CL2001032043AA	other	0.03943	0.96057	other
CL2001032044AA	other	0.04488	0.95512	other
CL2001032045AA (testset)	other	0.04949	0.95051	other
CL2001032046AA	other	0.0344	0.9656	other
CL2001032101AA	other	0.03674	0.96326	other
CL2001032102AA	other	0.03057	0.96943	other
CL2001032103AA	other	0.03582	0.96418	other
CL2001032104AA	other	0.02261	0.97739	other
CL2001032105AA	other	0.02595	0.97405	other
CL2001032107AA	other	0.03036	0.96964	other
CL2001032108AA (testset)	other	0.03281	0.96719	other
CL2001032109AA (testset)	other	0.02266	0.97734	other
CL2001032110AA	other	0.031	0.969	other
CL2001032111AA (testset)	other	0.05124	0.94876	other
CL2001032113AA	other	0.02881	0.97119	other
CL2001032114AA	other	0.0298	0.9702	other
CL2001032115AA	other	0.0879	0.9121	other
CL2001032116AA	other	0.03275	0.96725	other
CL2001032117AA (testset)	other	0.02042	0.97958	other
CL2001032121AA	other	0.04967	0.95033	other
CL2001032122AA	SQUAMOUS	0.8282	0.1718	SQUAMOUS
CL2001032124AA (testset)	other	0.02903	0.97097	other
CL2001032125AA	other	0.07873	0.92127	other
CL2001032127AA (testset)	other	0.03597	0.96403	other
CL2001032128AA (testset)	other	0.04513	0.95487	other
CL2001032129AA (testset)	SQUAMOUS	0.9925	0.0075	SQUAMOUS
CL2001032130AA	other	0.02375	0.97625	other
CL2001032132AA (testset)	other	0.03022	0.96978	other
CL2001032134AA	other	0.05484	0.94516	other
CL2001032135AA	other	0.03477	0.96523	other
CL2001032136AA (testset)	other	0.02979	0.97021	other
CL2001032138AA	other	0.03175	0.96825	other
CL2001032141AA	other	0.03844	0.96156	other
CL2001032142AA	other	0.50613	0.49387	SQUAMOUS
CL2001032144AA	SQUAMOUS	0.86525	0.13475	SQUAMOUS
CL2001032145AA (testset)	other	0.0319	0.9681	other
CL2001032147AA (testset)	other	0.0309	0.9691	other
CL2001032149AA (testset)	other	0.03496	0.96504	other
CL2001032151AA (testset)	other	0.05979	0.94021	other
CL2001032152AA	other	0.03095	0.96905	other
CL2001032153AA (testset)	SQUAMOUS	0.90398	0.09602	SQUAMOUS
CL2001032155AA	other	0.03604	0.96396	other
CL2001032156AA	other	0.11149	0.88851	other
CL2001032202AA	other	0.03639	0.96361	other
CL2001032206AA (testset)	other	0.03882	0.96118	other
CL2001032207AA	SQUAMOUS	0.95308	0.04692	SQUAMOUS
CL2001032209AA (testset)	SQUAMOUS	0.98822	0.01178	SQUAMOUS
CL2001032210AA	other	0.03302	0.96698	other
CL2001032211AA (testset)	other	0.03406	0.96594	other
CL2001032212AA (testset)	other	0.03205	0.96795	other
CL2001032213AA	other	0.03881	0.96119	other
CL2001032214AA	other	0.10039	0.89961	other
CL2001032217AA (testset)	other	0.06747	0.93253	other
CL2001032218AA	SQUAMOUS	0.79768	0.20232	SQUAMOUS
CL2001032219AA	other	0.04312	0.95688	other
CL2001032220AA	other	0.04177	0.95823	other
CL2001032222AA	SQUAMOUS	0.65427	0.34573	SQUAMOUS
CL2001032229AA	other	0.03319	0.96681	other
CL2001032231AA	SQUAMOUS	0.70403	0.29597	SQUAMOUS
CL2001032232AA (testset)	other	0.02439	0.97561	other
CL2001032233AA	other	0.02504	0.97496	other
CL2001032238AA (testset)	other	0.0364	0.9636	other
CL2001032239AA	SQUAMOUS	0.08363	0.91637	other
CL2001032240AA	SQUAMOUS	0.91338	0.08662	SQUAMOUS
CL2001032241AA	other	0.03027	0.96973	other
CL2001032242AA	other	0.03849	0.96151	other
CL2001032243AA (testset)	other	0.05385	0.94615	other
CL2001032248AA	other	0.02805	0.97195	other
CL2001032249AA	other	0.03216	0.96784	other
CL2001032252AA	other	0.18382	0.81618	other
CL2001032254AA (testset)	other	0.04724	0.95276	other
CL2001032255AA (testset)	other	0.02458	0.97542	other
CL2001032256AA	other	0.02577	0.97423	other
CL2001032259AA (testset)	other	0.10242	0.89758	other
CL2001032260AA (testset)	other	0.03989	0.96011	other
CL2001032301AA	other	0.04462	0.95538	other
CL2001032304AA	other	0.03895	0.96105	other
CL2001032305AA (testset)	SQUAMOUS	0.8197	0.1803	SQUAMOUS
CL2001032306AA	other	0.03042	0.96958	other
CL2001032307AA	other	0.02631	0.97369	other
CL2001032308AA	other	0.55513	0.44487	SQUAMOUS
CL2001032309AA	other	0.0317	0.9683	other
CL2001032310AA	other	0.02732	0.97268	other
CL2001032311AA	other	0.13021	0.86979	other
CL2001032312AA	other	0.03277	0.96723	other
CL2001032313AA	other	0.0318	0.9682	other
CL2001032314AA	other	0.03072	0.96928	other
CL2001032316AA	other	0.057	0.943	other
CL2001032601AA	other	0.02805	0.97195	other
CL2001032602AA (testset)	other	0.03519	0.96481	other
CL2001032604AA (testset)	other	0.03235	0.96765	other
CL2001032607AA (testset)	other	0.03193	0.96807	other
CL2001032608AA	SQUAMOUS	0.96791	0.03209	SQUAMOUS
CL2001032610AA	other	0.02445	0.97555	other
CL2001032612AA	other	0.03288	0.96712	other
CL2001032613AA	other	0.02963	0.97037	other
CL2001032614AA (testset)	other	0.03113	0.96887	other
CL2001032616AA	other	0.04498	0.95502	other
CL2001032617AA	other	0.03519	0.96481	other
CL2001032620AA	other	0.0377	0.9623	other
CL2001032625AA	other	0.0386	0.9614	other
CL2001032627AA	SQUAMOUS	0.97218	0.02782	SQUAMOUS
CL2001032628AA	other	0.03647	0.96353	other
CL2001032629AA (testset)	other	0.04314	0.95686	other
CL2001032630AA (testset)	other	0.02536	0.97464	other
CL2001032632AA	other	0.05265	0.94735	other
CL2001032638AA	other	0.02781	0.97219	other
CL2001032640AA	other	0.04018	0.95982	other
CL2001032643AA	other	0.03025	0.96975	other
CL2001032644AA (testset)	SQUAMOUS	0.98279	0.01721	SQUAMOUS
CL2001032647AA	other	0.03477	0.96523	other
CL2001032701AA	other	0.03392	0.96608	other
CL2001032702AA	other	0.02373	0.97627	other
CL2001032703AA	other	0.03591	0.96409	other
CL2001032704AA	other	0.16051	0.83949	other
CL2001032706AA	other	0.03142	0.96858	other
CL2001032709AA (testset)	other	0.02172	0.97828	other
CL2001032716AA	other	0.04158	0.95842	other
CL2001032717AA (testset)	other	0.02542	0.97458	other
CL2001032718AA	other	0.05178	0.94822	other
CL2001032719AA (testset)	SQUAMOUS	0.77299	0.22701	SQUAMOUS
CL2001032720AA	other	0.03905	0.96095	other
CL2001032722AA	other	0.03076	0.96924	other
CL2001032724AA	other	0.03504	0.96496	other
CL2001032725AA (testset)	other	0.03692	0.96308	other
CL2001032727AA	other	0.03654	0.96346	other
CL2001032729AA	other	0.04012	0.95988	other
CL2001032730AA	other	0.02524	0.97476	other
CL2001032732AA	SQUAMOUS	0.03479	0.96521	other
CL2001032733AA (testset)	other	0.02942	0.97058	other
CL2001032738AA	other	0.04152	0.95848	other
CL2001032742AA (testset)	other	0.03306	0.96694	other
CL2001032746AA (testset)	other	0.04762	0.95238	other
CL2001032747AA (testset)	other	0.03524	0.96476	other
CL2001032833AA (testset)	other	0.02823	0.97177	other
CL2001032836AA	other	0.0347	0.9653	other
CL2001032838AA	other	0.0258	0.9742	other
CL2001032839AA	other	0.03808	0.96192	other
CL2001032841AA	other	0.02606	0.97394	other
CL2001032842AA	other	0.03517	0.96483	other
CL2001032843AA	other	0.03405	0.96595	other
CL2001032845AA (testset)	other	0.0185	0.9815	other
CL2001032846AA (testset)	other	0.0282	0.9718	other
CL2001032847AA (testset)	other	0.03259	0.96741	other
CL2001032848AA	other	0.04419	0.95581	other
CL2001032850AA	other	0.03236	0.96764	other
CL2001032853AA	SQUAMOUS	0.95371	0.04629	SQUAMOUS
CL2001032854AA	other	0.03813	0.96187	other
CL2001032856AA	other	0.02828	0.97172	other
CL2001032857AA	other	0.03034	0.96966	other
CL2001032860AA	other	0.03568	0.96432	other
CL2001040305AA	other	0.02466	0.97534	other
CL2001040306AA	other	0.04834	0.95166	other
CL2001041708AA (testset)	other	0.05083	0.94917	other
CL2001041711AA	other	0.03782	0.96218	other
CL2001041716AA	other	0.03437	0.96563	other
CL2001042501AA	other	0.02987	0.97013	other
CL2001042505AA (testset)	other	0.0269	0.9731	other
CL2001042506AA	other	0.07175	0.92825	other