StAM Report: Prediction of TEL-AML1 (predictive) - beta 0.24, 0.76



Information on Evaluation

Total number of samples: 327
Training samples: 217 ( 52 from TEL-AML1, 165 from other )
Test samples: 110 ( 27 from TEL-AML1, 83 from other )
Focus on class: TEL-AML1
Data frm chip: hgu95av2
Start node: GO:0008150 ( biological_process )


Annotation Information

Chip annotations for: hgu95av2
Chip data package: data package version 1.5.1
Mon May 10 11:12:58 2004
GO data package: GO package version 1.5.1
Mon May 10 11:46:39 2004
Root node chosen: GO:0008150 ( biological_process )
Number of probesets
on the chip:
12625
Probesets annotated
below GO:0008150 :
8679
Number of nodes
with direct annotations:
1359
Total number of nodes: 2204


Information on Cross Validation

Number of samples: 217
Number of classes: 2
Class weights: 'TEL-AML1': 0.24 'other': 0.76
Class prior: 'TEL-AML1':0.24 'other':0.76
Shrinkage candidates: 0, 0.033, 0.065, 0.098, 0.13, 0.163, 0.195, 0.228, 0.261, 0.293, 0.326, 0.358, 0.391, 0.424, 0.456, 0.489, 0.521, 0.554, 0.586, 0.619, 0.652, 0.684, 0.717, 0.749, 0.782, 0.814, 0.847, 0.88, 0.912, 0.945


Cross validated performance


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 Root.error.rateRoot.performanceMean.redundancyNodesGenes
00.027650.454571.301755427933
0.0330.027650.44741.304895427933
0.0650.027650.439211.309345427933
0.0980.027650.429741.323915317932
0.130.027650.418581.345655117730
0.1630.027650.405431.387724697619
0.1950.027650.392511.422714407542
0.2280.027650.381021.454044157467
0.2610.027650.37281.501413837389
0.2930.032260.364841.526093627325
0.3260.032260.354711.560573397271
0.3580.032260.343081.601283097064
0.3910.032260.330931.747822326865
0.4240.032260.316931.842852066735
0.4560.032260.300941.900291926590
0.4890.032260.289442.068741626195
0.5210.032260.277642.249771406090
0.5540.027650.266382.499551185838
0.5860.027650.257422.58961135831
0.6190.027650.246552.70831065777
0.6520.027650.231562.86554975569
0.6840.027650.217933.0683885480
0.7170.023040.206043.26029775212
0.7490.023040.19573.33052675086
0.7820.023040.183693.24399554540
0.8140.018430.168252.9233403796
0.8470.013820.162713.7228117968
0.880.018430.146834.778758701
0.9120.013820.147137.549935342


Information on Model Fit


Fit for D = 0.8471

Number of classes: 2
Class weights: 'TEL-AML1': 0.24 'other': 0.76
Class prior: 'TEL-AML1':0.24 'other':0.76
Chosen shrinkage level: 0.847
(by optimizing the root's error rate )
Number of nodes left 17
Number of accessible genes 968

Shrunken prediction graph

Hover over a node to see its description, click on it to view its detailed results.


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Nodewise evaluation


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Information on Predictions

Number of samples: 327 (79 from TEL-AML1, 248 from other)
Test samples: 110 (27 from TEL-AML1, 83 from other)
Classes: TEL-AML1, other


Illustration of Performance on testdata

Nodewise evaluation


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Prediction image

Hover over a node description to see its ID, click on it to see detailed results.


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Details on Nodes


GO:0008150

biological_process

Biological
Process

Parent node

8 child nodes

Performance on training data

 SensitivitySpecificity
TEL-AML110.98182
other0.981821

Performance on test data

 SensitivitySpecificity
TEL-AML10.962960.98795
other0.987950.96296

Predictions

 ClassTEL-AML1otherPredictionn
BCR-ABL-1 (testset)other0.000670.99933 other
BCR-ABL-2other0.075760.92424 other
BCR-ABL-3other0.021840.97816 other
BCR-ABL-4other0.033090.96691 other
BCR-ABL-5other0.017610.98239 other
BCR-ABL-6other0.155690.84431 other
BCR-ABL-7other0.005020.99498 other
BCR-ABL-8other0.022370.97763 other
BCR-ABL-9other0.012930.98707 other
BCR-ABL-C1 (testset)other0.006070.99393 other
BCR-ABL-Hyperdip-10 (testset)other0.119730.88027 other
BCR-ABL-Hyperdip-R5other0.034570.96543 other
BCR-ABL-R1 (testset)other0.008320.99168 other
BCR-ABL-R2other0.021470.97853 other
BCR-ABL-R3other0.05150.9485 other
E2A-PBX1-10other0.00110.9989 other
E2A-PBX1-11other0.00110.9989 other
E2A-PBX1-12other0.022420.97758 other
E2A-PBX1-13 (testset)other0.001430.99857 other
E2A-PBX1-1 (testset)other0.000270.99973 other
E2A-PBX1-2other0.004170.99583 other
E2A-PBX1-3 (testset)other0.008450.99155 other
E2A-PBX1-4other0.025330.97467 other
E2A-PBX1-5other0.001720.99828 other
E2A-PBX1-6other0.004820.99518 other
E2A-PBX1-7other0.00670.9933 other
E2A-PBX1-8other0.004230.99577 other
E2A-PBX1-9 (testset)other0.000580.99942 other
E2A-PBX1-2M1other0.013630.98637 other
E2A-PBX1-C10 (testset)other0.001920.99808 other
E2A-PBX1-C11other0.005130.99487 other
E2A-PBX1-C12 (testset)other0.003730.99627 other
E2A-PBX1-C1other0.023040.97696 other
E2A-PBX1-C2 (testset)other0.003110.99689 other
E2A-PBX1-C3 (testset)other0.004520.99548 other
E2A-PBX1-C4other0.001820.99818 other
E2A-PBX1-C5other0.010110.98989 other
E2A-PBX1-C6 (testset)other0.00520.9948 other
E2A-PBX1-C7other0.000790.99921 other
E2A-PBX1-C8other0.001340.99866 other
E2A-PBX1-C9other0.004510.99549 other
E2A-PBX1-R1other0.002730.99727 other
Hyperdip-50-10other0.018270.98173 other
Hyperdip-50-11 (testset)other0.003060.99694 other
Hyperdip-50-12other0.012020.98798 other
Hyperdip-50-13other0.007230.99277 other
Hyperdip-50-14other0.006340.99366 other
Hyperdip-50-1 (testset)other0.0340.966 other
Hyperdip-50-2other0.001440.99856 other
Hyperdip-50-3 (testset)other0.005340.99466 other
Hyperdip-50-4other0.013760.98624 other
Hyperdip-50-5 (testset)other0.006170.99383 other
Hyperdip-50-6other0.007610.99239 other
Hyperdip-50-7other0.028020.97198 other
Hyperdip-50-8 (testset)other0.007390.99261 other
Hyperdip-50-9 (testset)other0.046340.95366 other
Hyperdip-50-2M1other0.010460.98954 other
Hyperdip-50-2M2other0.017550.98245 other
Hyperdip-50-C10other0.037510.96249 other
Hyperdip-50-C11other0.010390.98961 other
Hyperdip-50-C12other0.031780.96822 other
Hyperdip-50-C13other0.003780.99622 other
Hyperdip-50-C14other0.005210.99479 other
Hyperdip-50-C15other0.014010.98599 other
Hyperdip-50-C16other0.006150.99385 other
Hyperdip-50-C17other0.018220.98178 other
Hyperdip-50-C18 (testset)other0.020660.97934 other
Hyperdip-50-C19 (testset)other0.003170.99683 other
Hyperdip-50-C1other0.005660.99434 other
Hyperdip-50-C20other0.015450.98455 other
Hyperdip-50-C21 (testset)other0.002830.99717 other
Hyperdip-50-C22other0.008610.99139 other
Hyperdip-50-C23other0.006930.99307 other
Hyperdip-50-C24 (testset)other0.009590.99041 other
Hyperdip-50-C25 (testset)other0.002160.99784 other
Hyperdip-50-C26other0.014640.98536 other
Hyperdip-50-C27-Nother0.005280.99472 other
Hyperdip-50-C28other0.015140.98486 other
Hyperdip-50-C29 (testset)other0.018350.98165 other
Hyperdip-50-C2 (testset)other0.02650.9735 other
Hyperdip-50-C30 (testset)other0.001340.99866 other
Hyperdip-50-C31other0.020410.97959 other
Hyperdip-50-C32other0.001420.99858 other
Hyperdip-50-C33other0.035940.96406 other
Hyperdip-50-C34 (testset)other0.005530.99447 other
Hyperdip-50-C35 (testset)other0.008380.99162 other
Hyperdip-50-C36other0.017870.98213 other
Hyperdip-50-C37 (testset)other0.004530.99547 other
Hyperdip-50-C38other0.012460.98754 other
Hyperdip-50-C39other0.024020.97598 other
Hyperdip-50-C3 (testset)other0.024620.97538 other
Hyperdip-50-C40other0.013340.98666 other
Hyperdip-50-C41other0.002560.99744 other
Hyperdip-50-C42 (testset)other0.005790.99421 other
Hyperdip-50-C43other0.093450.90655 other
Hyperdip-50-C4 (testset)other0.008660.99134 other
Hyperdip-50-C5other0.016550.98345 other
Hyperdip-50-C6other0.008190.99181 other
Hyperdip-50-C7other0.051910.94809 other
Hyperdip-50-C8other0.003570.99643 other
Hyperdip-50-C9 (testset)other0.006130.99387 other
Hyperdip-50-R1other0.017790.98221 other
Hyperdip-50-R2other0.062820.93718 other
Hyperdip-50-R3 (testset)other0.07870.9213 other
Hyperdip-50-R4other0.0170.983 other
Hyperdip-50-R5 (testset)other0.027270.97273 other
Hyperdip47-50-1other0.036740.96326 other
Hyperdip47-50-2other0.212730.78727 other
Hyperdip47-50-3other0.003520.99648 other
Hyperdip47-50-2M1other0.0090.991 other
Hyperdip47-50-C10other0.204040.79596 other
Hyperdip47-50-C11other0.126760.87324 other
Hyperdip47-50-C12 (testset)other0.005390.99461 other
Hyperdip47-50-C13other0.005110.99489 other
Hyperdip47-50-C14-N (testset)other0.04820.9518 other
Hyperdip47-50-C15 (testset)other0.012190.98781 other
Hyperdip47-50-C16other0.006270.99373 other
Hyperdip47-50-C17other0.012680.98732 other
Hyperdip47-50-C18 (testset)other0.006290.99371 other
Hyperdip47-50-C19other0.011880.98812 other
Hyperdip47-50-C1other0.004740.99526 other
Hyperdip47-50-C2other0.206480.79352 other
Hyperdip47-50-C3-N (testset)other0.005880.99412 other
Hyperdip47-50-C4 (testset)other0.247910.75209 other
Hyperdip47-50-C5other0.003340.99666 other
Hyperdip47-50-C6 (testset)other0.991890.00811 TEL-AML1
Hyperdip47-50-C7 (testset)other0.046690.95331 other
Hyperdip47-50-C8other0.095740.90426 other
Hyperdip47-50-C9other0.040920.95908 other
Hypodip-1 (testset)other0.056780.94322 other
Hypodip-2other0.009640.99036 other
Hypodip-2M1other0.002230.99777 other
Hypodip-C1other0.991850.00815 TEL-AML1
Hypodip-C2other0.146610.85339 other
Hypodip-C3other0.007110.99289 other
Hypodip-C4 (testset)other0.003020.99698 other
Hypodip-C5 (testset)other0.017030.98297 other
Hypodip-C6other0.001120.99888 other
MLL-1other0.00160.9984 other
MLL-2other0.000330.99967 other
MLL-3other0.000340.99966 other
MLL-4other0.000450.99955 other
MLL-5other0.002020.99798 other
MLL-6 (testset)other0.000340.99966 other
MLL-7other0.001340.99866 other
MLL-8 (testset)other0.002730.99727 other
MLL-2M1 (testset)other0.006110.99389 other
MLL-2M2other0.000210.99979 other
MLL-C1other9e-050.99991 other
MLL-C2 (testset)other1e-040.9999 other
MLL-C3 (testset)other0.006670.99333 other
MLL-C4other0.023280.97672 other
MLL-C5other0.061750.93825 other
MLL-C6 (testset)other0.009790.99021 other
MLL-R1 (testset)other0.013870.98613 other
MLL-R2 (testset)other0.004040.99596 other
MLL-R3 (testset)other0.000250.99975 other
MLL-R4other0.009210.99079 other
Normal-1other0.080160.91984 other
Normal-2other0.004780.99522 other
Normal-3other0.041750.95825 other
Normal-C1-Nother0.044410.95559 other
Normal-C10other0.000840.99916 other
Normal-C11-Nother0.004370.99563 other
Normal-C12 (testset)other0.077830.92217 other
Normal-C2-N (testset)other0.197270.80273 other
Normal-C3-N (testset)other0.079880.92012 other
Normal-C4-N (testset)other0.037930.96207 other
Normal-C5other0.006780.99322 other
Normal-C6other0.11530.8847 other
Normal-C7-Nother0.056180.94382 other
Normal-C8other0.002710.99729 other
Normal-C9 (testset)other0.023040.97696 other
Normal-R1other0.003230.99677 other
Normal-R2-Nother0.012470.98753 other
Normal-R3 (testset)other0.020760.97924 other
Pseudodip-1other0.146280.85372 other
Pseudodip-2other0.606860.39314 TEL-AML1
Pseudodip-3other0.022860.97714 other
Pseudodip-4other0.005680.99432 other
Pseudodip-5other0.043790.95621 other
Pseudodip-6other0.010170.98983 other
Pseudodip-7 (testset)other0.006080.99392 other
Pseudodip-8-Nother0.095560.90444 other
Pseudodip-9 (testset)other0.005760.99424 other
Pseudodip-C10other0.924180.07582 TEL-AML1
Pseudodip-C11other0.008150.99185 other
Pseudodip-C12 (testset)other0.094530.90547 other
Pseudodip-C13other0.013020.98698 other
Pseudodip-C14 (testset)other0.008060.99194 other
Pseudodip-C15other0.015070.98493 other
Pseudodip-C16-Nother0.06320.9368 other
Pseudodip-C17other0.012530.98747 other
Pseudodip-C18other0.033750.96625 other
Pseudodip-C19other0.013290.98671 other
Pseudodip-C1 (testset)other0.025690.97431 other
Pseudodip-C2-Nother0.020030.97997 other
Pseudodip-C3other0.065490.93451 other
Pseudodip-C4other0.090290.90971 other
Pseudodip-C5other0.011560.98844 other
Pseudodip-C6other0.030780.96922 other
Pseudodip-C7other0.279970.72003 other
Pseudodip-C8other0.138260.86174 other
Pseudodip-C9 (testset)other0.062720.93728 other
Pseudodip-R1-Nother0.120540.87946 other
T-ALL-10other0.001010.99899 other
T-ALL-1other0.000920.99908 other
T-ALL-2other0.057940.94206 other
T-ALL-3 (testset)other0.000550.99945 other
T-ALL-4 (testset)other0.000580.99942 other
T-ALL-5 (testset)other9e-050.99991 other
T-ALL-6other0.000760.99924 other
T-ALL-7other4e-050.99996 other
T-ALL-8 (testset)other0.000340.99966 other
T-ALL-9 (testset)other9e-050.99991 other
T-ALL-2M1other8e-050.99992 other
T-ALL-C10other0.001360.99864 other
T-ALL-C11other5e-050.99995 other
T-ALL-C12 (testset)other0.000110.99989 other
T-ALL-C13other0.001230.99877 other
T-ALL-C14 (testset)other0.011290.98871 other
T-ALL-C15other7e-050.99993 other
T-ALL-C16other0.006170.99383 other
T-ALL-C17 (testset)other0.003490.99651 other
T-ALL-C18 (testset)other0.000490.99951 other
T-ALL-C19other0.000780.99922 other
T-ALL-C1 (testset)other0.002820.99718 other
T-ALL-C20 (testset)other0.000440.99956 other
T-ALL-C21other0.001810.99819 other
T-ALL-C22other0.002090.99791 other
T-ALL-C23other0.015060.98494 other
T-ALL-C24other0.001050.99895 other
T-ALL-C25 (testset)other0.000190.99981 other
T-ALL-C26other0.003430.99657 other
T-ALL-C2other0.000180.99982 other
T-ALL-C3other0.001360.99864 other
T-ALL-C4other0.000840.99916 other
T-ALL-C5other0.000620.99938 other
T-ALL-C6other3e-050.99997 other
T-ALL-C7other0.000590.99941 other
T-ALL-C8other0.018580.98142 other
T-ALL-C9other6e-040.9994 other
T-ALL-R1 (testset)other0.000840.99916 other
T-ALL-R2other0.000270.99973 other
T-ALL-R3other0.001690.99831 other
T-ALL-R4 (testset)other2e-040.9998 other
T-ALL-R5other0.000350.99965 other
T-ALL-R6 (testset)other4e-040.9996 other
TEL-AML1-10TEL-AML10.977670.02233 TEL-AML1
TEL-AML1-11 (testset)TEL-AML10.959220.04078 TEL-AML1
TEL-AML1-12TEL-AML10.906390.09361 TEL-AML1
TEL-AML1-13TEL-AML10.917910.08209 TEL-AML1
TEL-AML1-14TEL-AML10.991870.00813 TEL-AML1
TEL-AML1-1 (testset)TEL-AML10.421280.57872 other
TEL-AML1-2TEL-AML10.950380.04962 TEL-AML1
TEL-AML1-3TEL-AML10.99170.0083 TEL-AML1
TEL-AML1-4 (testset)TEL-AML10.950090.04991 TEL-AML1
TEL-AML1-5TEL-AML10.839060.16094 TEL-AML1
TEL-AML1-6 (testset)TEL-AML10.816190.18381 TEL-AML1
TEL-AML1-7TEL-AML10.98840.0116 TEL-AML1
TEL-AML1-8TEL-AML10.98340.0166 TEL-AML1
TEL-AML1-9TEL-AML10.884110.11589 TEL-AML1
TEL-AML1-2M1TEL-AML10.931210.06879 TEL-AML1
TEL-AML1-2M2TEL-AML10.986490.01351 TEL-AML1
TEL-AML1-2M3TEL-AML10.868090.13191 TEL-AML1
TEL-AML1-2M4TEL-AML10.952130.04787 TEL-AML1
TEL-AML1-2M5TEL-AML10.958380.04162 TEL-AML1
TEL-AML1-C10 (testset)TEL-AML10.877890.12211 TEL-AML1
TEL-AML1-C11TEL-AML10.960250.03975 TEL-AML1
TEL-AML1-C12TEL-AML10.979560.02044 TEL-AML1
TEL-AML1-C13 (testset)TEL-AML10.980950.01905 TEL-AML1
TEL-AML1-C14TEL-AML10.977460.02254 TEL-AML1
TEL-AML1-C15 (testset)TEL-AML10.955440.04456 TEL-AML1
TEL-AML1-C16TEL-AML10.835310.16469 TEL-AML1
TEL-AML1-C17TEL-AML10.873660.12634 TEL-AML1
TEL-AML1-C18 (testset)TEL-AML10.983170.01683 TEL-AML1
TEL-AML1-C19TEL-AML10.961050.03895 TEL-AML1
TEL-AML1-C1TEL-AML10.947610.05239 TEL-AML1
TEL-AML1-C20TEL-AML10.993640.00636 TEL-AML1
TEL-AML1-C21TEL-AML10.906520.09348 TEL-AML1
TEL-AML1-C22TEL-AML10.979850.02015 TEL-AML1
TEL-AML1-C23TEL-AML10.733670.26633 TEL-AML1
TEL-AML1-C24TEL-AML10.972370.02763 TEL-AML1
TEL-AML1-C25TEL-AML10.974340.02566 TEL-AML1
TEL-AML1-C26 (testset)TEL-AML10.929510.07049 TEL-AML1
TEL-AML1-C27TEL-AML10.932830.06717 TEL-AML1
TEL-AML1-C28TEL-AML10.9970.003 TEL-AML1
TEL-AML1-C29 (testset)TEL-AML10.974320.02568 TEL-AML1
TEL-AML1-C2TEL-AML10.986650.01335 TEL-AML1
TEL-AML1-C30 (testset)TEL-AML10.967290.03271 TEL-AML1
TEL-AML1-C31 (testset)TEL-AML10.999690.00031 TEL-AML1
TEL-AML1-C32TEL-AML10.957320.04268 TEL-AML1
TEL-AML1-C33TEL-AML10.955320.04468 TEL-AML1
TEL-AML1-C34 (testset)TEL-AML10.997980.00202 TEL-AML1
TEL-AML1-C35TEL-AML10.910320.08968 TEL-AML1
TEL-AML1-C36 (testset)TEL-AML10.550170.44983 TEL-AML1
TEL-AML1-C37TEL-AML10.997980.00202 TEL-AML1
TEL-AML1-C38 (testset)TEL-AML10.943560.05644 TEL-AML1
TEL-AML1-C39TEL-AML10.989350.01065 TEL-AML1
TEL-AML1-C3TEL-AML10.916580.08342 TEL-AML1
TEL-AML1-C40 (testset)TEL-AML10.923060.07694 TEL-AML1
TEL-AML1-C41 (testset)TEL-AML10.717830.28217 TEL-AML1
TEL-AML1-C42 (testset)TEL-AML10.609890.39011 TEL-AML1
TEL-AML1-C43 (testset)TEL-AML10.812790.18721 TEL-AML1
TEL-AML1-C44 (testset)TEL-AML10.883950.11605 TEL-AML1
TEL-AML1-C45 (testset)TEL-AML10.85930.1407 TEL-AML1
TEL-AML1-C46TEL-AML10.853130.14687 TEL-AML1
TEL-AML1-C47 (testset)TEL-AML10.979610.02039 TEL-AML1
TEL-AML1-C48 (testset)TEL-AML10.942040.05796 TEL-AML1
TEL-AML1-C49TEL-AML10.913280.08672 TEL-AML1
TEL-AML1-C4TEL-AML10.950010.04999 TEL-AML1
TEL-AML1-C50TEL-AML10.990670.00933 TEL-AML1
TEL-AML1-C51 (testset)TEL-AML10.883390.11661 TEL-AML1
TEL-AML1-C52TEL-AML10.97890.0211 TEL-AML1
TEL-AML1-C53 (testset)TEL-AML10.595440.40456 TEL-AML1
TEL-AML1-C54TEL-AML10.972830.02717 TEL-AML1
TEL-AML1-C55TEL-AML10.988410.01159 TEL-AML1
TEL-AML1-C56TEL-AML10.875490.12451 TEL-AML1
TEL-AML1-C57TEL-AML10.959050.04095 TEL-AML1
TEL-AML1-C5TEL-AML10.94340.0566 TEL-AML1
TEL-AML1-C6TEL-AML10.980270.01973 TEL-AML1
TEL-AML1-C7TEL-AML10.929530.07047 TEL-AML1
TEL-AML1-C8TEL-AML10.666870.33313 TEL-AML1
TEL-AML1-C9 (testset)TEL-AML10.753190.24681 TEL-AML1
TEL-AML1-R1 (testset)TEL-AML10.98220.0178 TEL-AML1
TEL-AML1-R2TEL-AML10.95840.0416 TEL-AML1
TEL-AML1-R3TEL-AML10.979140.02086 TEL-AML1

 


Generated by StAM on Tue Sep 7 18:25:55 2004