GO:0006357


GO:0006357

regulation of transcription from Pol II promoter
(annotated genes)

Biological
Process

Parent node

This leaf node contains 193 genes

The following 63 of these are used in classification:

 SymbolGenenameT-ALL scoreother score
32649_atTCF7 transcription factor 7 (T-cell specific, HMG-box)2.7114-0.4105
633_s_atTFDP2 transcription factor Dp-2 (E2F dimerization partner 2)1.4374-0.2176
40570_atFOXO1A forkhead box O1A (rhabdomyosarcoma)-1.25850.1905
506_s_atSTAT5A signal transducer and activator of transcription 5A1.0874-0.1646
34741_atTFDP2 transcription factor Dp-2 (E2F dimerization partner 2)0.8209-0.1243
33869_atSTAT5B signal transducer and activator of transcription 5B0.6089-0.0922
40458_atSTAT5A signal transducer and activator of transcription 5A0.5822-0.0882
35789_atOIP106 OGT(O-Glc-NAc transferase)-interacting protein 106 KDa-0.55990.0848
37179_atNFE2 nuclear factor (erythroid-derived 2), 45kDa0.4967-0.0752
2094_s_atFOS v-fos FBJ murine osteosarcoma viral oncogene homolog-0.47580.072
32706_atHIRA HIR histone cell cycle regulation defective homolog A (S. cerevisiae)0.4659-0.0705
36171_atPC4 activated RNA polymerase II transcription cofactor 40.4542-0.0688
36605_atTCF4 transcription factor 4-0.45330.0686
35158_atMYCN v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)0.4529-0.0686
38011_atC19orf2 chromosome 19 open reading frame 20.4388-0.0664
1916_s_atFOS v-fos FBJ murine osteosarcoma viral oncogene homolog-0.42860.0649
1915_s_atFOS v-fos FBJ murine osteosarcoma viral oncogene homolog-0.42340.0641
35939_s_atPOU4F1 POU domain, class 4, transcription factor 1-0.38640.0585
40961_atSMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2-0.38070.0576
37527_atELK3 ELK3, ETS-domain protein (SRF accessory protein 2)-0.37180.0563
35883_atSPIB Spi-B transcription factor (Spi-1/PU.1 related)-0.36960.056
906_atSTAT4 signal transducer and activator of transcription 40.3218-0.0487
35749_atTADA3L transcriptional adaptor 3 (NGG1 homolog, yeast)-like0.2851-0.0432
37757_atTFDP1 transcription factor Dp-10.2766-0.0419
35940_atPOU4F1 POU domain, class 4, transcription factor 1-0.27610.0418
33425_atTRIM28 tripartite motif-containing 280.255-0.0386
34694_atSMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2-0.2390.0362
40124_atRUVBL1 RuvB-like 1 (E. coli)0.2309-0.035
34695_atSMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2-0.22390.0339
40202_atBTEB1 basic transcription element binding protein 1-0.20480.031
455_atSMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2-0.180.0273
34356_atSURB7 SRB7 suppressor of RNA polymerase B homolog (yeast)0.1638-0.0248
36137_atCHD4 chromodomain helicase DNA binding protein 40.152-0.023
1670_atTFDP1 transcription factor Dp-10.1425-0.0216
40822_atNFATC3 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 30.1277-0.0193
36617_atID1 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein0.127-0.0192
40823_s_atNFATC3 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 30.1258-0.019
2078_s_atMYCN v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)0.1127-0.0171
32695_atHTATSF1 HIV TAT specific factor 10.1046-0.0158
40962_s_atSMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2-0.1010.0153
1688_s_atMNAT1 menage a trois 1 (CAK assembly factor)0.0969-0.0147
35777_atRNF4 ring finger protein 40.0953-0.0144
1973_s_atMYC v-myc myelocytomatosis viral oncogene homolog (avian)0.0905-0.0137
2049_s_atJUNB jun B proto-oncogene-0.08980.0136
37724_atMYC v-myc myelocytomatosis viral oncogene homolog (avian)0.0878-0.0133
891_atYY1 YY1 transcription factor0.0864-0.0131
37152_atPPARD peroxisome proliferative activated receptor, delta-0.08640.0131
33348_atTCF12 transcription factor 12 (HTF4, helix-loop-helix transcription factors 4)0.0782-0.0118
250_atNFATC3 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 30.0781-0.0118
36080_atCLOCK clock homolog (mouse)-0.07580.0115
473_g_atSTAT5B signal transducer and activator of transcription 5B0.0731-0.0111
32135_atSREBF1 sterol regulatory element binding transcription factor 10.0724-0.011
33859_atSAP18 sin3-associated polypeptide, 18kDa0.0719-0.0109
1244_atSTAT2 signal transducer and activator of transcription 2, 113kDa-0.05910.009
41484_r_atJUND jun D proto-oncogene-0.04660.0071
41763_g_atTIAL1 TIA1 cytotoxic granule-associated RNA binding protein-like 10.0419-0.0063
32088_atBLZF1 basic leucine zipper nuclear factor 1 (JEM-1)0.0399-0.006
845_atSTAT6 signal transducer and activator of transcription 6, interleukin-4 induced-0.0380.0058
41762_atTIAL1 TIA1 cytotoxic granule-associated RNA binding protein-like 10.0343-0.0052
32786_atJUNB jun B proto-oncogene-0.02410.0037
36770_atSTAT2 signal transducer and activator of transcription 2, 113kDa-0.02160.0033
226_atPRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)-0.00820.0012
31393_r_atUTF1 undifferentiated embryonic cell transcription factor 1-0.00173e-04

Performance on training data

 SensitivitySpecificity
T-ALL0.906981
other10.90698

Performance on test data

 SensitivitySpecificity
T-ALL0.906981
other10.90698

Predictions

 ClassT-ALLotherPredictionn
BCR-ABL-1 (testset)other01 other
BCR-ABL-2 (testset)other01 other
BCR-ABL-3 (testset)other01 other
BCR-ABL-4 (testset)other01 other
BCR-ABL-5 (testset)other01 other
BCR-ABL-6 (testset)other0.000430.99957 other
BCR-ABL-7 (testset)other0.000760.99924 other
BCR-ABL-8 (testset)other01 other
BCR-ABL-9 (testset)other01 other
BCR-ABL-C1 (testset)other01 other
BCR-ABL-Hyperdip-10 (testset)other01 other
BCR-ABL-Hyperdip-R5 (testset)other01 other
BCR-ABL-R1 (testset)other5e-050.99995 other
BCR-ABL-R2 (testset)other0.001480.99852 other
BCR-ABL-R3 (testset)other0.001570.99843 other
E2A-PBX1-10 (testset)other01 other
E2A-PBX1-11 (testset)other01 other
E2A-PBX1-12 (testset)other01 other
E2A-PBX1-13 (testset)other01 other
E2A-PBX1-1 (testset)other01 other
E2A-PBX1-2 (testset)other01 other
E2A-PBX1-3 (testset)other01 other
E2A-PBX1-4 (testset)other01 other
E2A-PBX1-5 (testset)other01 other
E2A-PBX1-6 (testset)other01 other
E2A-PBX1-7 (testset)other01 other
E2A-PBX1-8 (testset)other01 other
E2A-PBX1-9 (testset)other01 other
E2A-PBX1-2M1 (testset)other01 other
E2A-PBX1-C10 (testset)other01 other
E2A-PBX1-C11 (testset)other01 other
E2A-PBX1-C12 (testset)other01 other
E2A-PBX1-C1 (testset)other1e-050.99999 other
E2A-PBX1-C2 (testset)other01 other
E2A-PBX1-C3 (testset)other01 other
E2A-PBX1-C4 (testset)other01 other
E2A-PBX1-C5 (testset)other01 other
E2A-PBX1-C6 (testset)other01 other
E2A-PBX1-C7 (testset)other01 other
E2A-PBX1-C8 (testset)other0.000160.99984 other
E2A-PBX1-C9 (testset)other01 other
E2A-PBX1-R1 (testset)other01 other
Hyperdip-50-10 (testset)other01 other
Hyperdip-50-11 (testset)other01 other
Hyperdip-50-12 (testset)other01 other
Hyperdip-50-13 (testset)other01 other
Hyperdip-50-14 (testset)other01 other
Hyperdip-50-1 (testset)other01 other
Hyperdip-50-2 (testset)other01 other
Hyperdip-50-3 (testset)other01 other
Hyperdip-50-4 (testset)other0.001180.99882 other
Hyperdip-50-5 (testset)other01 other
Hyperdip-50-6 (testset)other01 other
Hyperdip-50-7 (testset)other01 other
Hyperdip-50-8 (testset)other01 other
Hyperdip-50-9 (testset)other01 other
Hyperdip-50-2M1 (testset)other1e-050.99999 other
Hyperdip-50-2M2 (testset)other01 other
Hyperdip-50-C10 (testset)other01 other
Hyperdip-50-C11 (testset)other01 other
Hyperdip-50-C12 (testset)other01 other
Hyperdip-50-C13 (testset)other01 other
Hyperdip-50-C14 (testset)other01 other
Hyperdip-50-C15 (testset)other01 other
Hyperdip-50-C16 (testset)other01 other
Hyperdip-50-C17 (testset)other4e-050.99996 other
Hyperdip-50-C18 (testset)other01 other
Hyperdip-50-C19 (testset)other01 other
Hyperdip-50-C1 (testset)other01 other
Hyperdip-50-C20 (testset)other2e-050.99998 other
Hyperdip-50-C21 (testset)other01 other
Hyperdip-50-C22 (testset)other01 other
Hyperdip-50-C23 (testset)other01 other
Hyperdip-50-C24 (testset)other01 other
Hyperdip-50-C25 (testset)other01 other
Hyperdip-50-C26 (testset)other01 other
Hyperdip-50-C27-N (testset)other01 other
Hyperdip-50-C28 (testset)other01 other
Hyperdip-50-C29 (testset)other01 other
Hyperdip-50-C2 (testset)other01 other
Hyperdip-50-C30 (testset)other01 other
Hyperdip-50-C31 (testset)other01 other
Hyperdip-50-C32 (testset)other01 other
Hyperdip-50-C33 (testset)other01 other
Hyperdip-50-C34 (testset)other01 other
Hyperdip-50-C35 (testset)other01 other
Hyperdip-50-C36 (testset)other01 other
Hyperdip-50-C37 (testset)other01 other
Hyperdip-50-C38 (testset)other01 other
Hyperdip-50-C39 (testset)other01 other
Hyperdip-50-C3 (testset)other01 other
Hyperdip-50-C40 (testset)other01 other
Hyperdip-50-C41 (testset)other01 other
Hyperdip-50-C42 (testset)other01 other
Hyperdip-50-C43 (testset)other01 other
Hyperdip-50-C4 (testset)other01 other
Hyperdip-50-C5 (testset)other1e-050.99999 other
Hyperdip-50-C6 (testset)other01 other
Hyperdip-50-C7 (testset)other01 other
Hyperdip-50-C8 (testset)other01 other
Hyperdip-50-C9 (testset)other01 other
Hyperdip-50-R1 (testset)other2e-050.99998 other
Hyperdip-50-R2 (testset)other01 other
Hyperdip-50-R3 (testset)other01 other
Hyperdip-50-R4 (testset)other01 other
Hyperdip-50-R5 (testset)other01 other
Hyperdip47-50-1 (testset)other01 other
Hyperdip47-50-2 (testset)other1e-050.99999 other
Hyperdip47-50-3 (testset)other0.009360.99064 other
Hyperdip47-50-2M1 (testset)other01 other
Hyperdip47-50-C10 (testset)other01 other
Hyperdip47-50-C11 (testset)other01 other
Hyperdip47-50-C12 (testset)other0.000640.99936 other
Hyperdip47-50-C13 (testset)other1e-040.9999 other
Hyperdip47-50-C14-N (testset)other01 other
Hyperdip47-50-C15 (testset)other01 other
Hyperdip47-50-C16 (testset)other01 other
Hyperdip47-50-C17 (testset)other01 other
Hyperdip47-50-C18 (testset)other01 other
Hyperdip47-50-C19 (testset)other0.009970.99003 other
Hyperdip47-50-C1 (testset)other01 other
Hyperdip47-50-C2 (testset)other1e-050.99999 other
Hyperdip47-50-C3-N (testset)other01 other
Hyperdip47-50-C4 (testset)other01 other
Hyperdip47-50-C5 (testset)other2e-040.9998 other
Hyperdip47-50-C6 (testset)other01 other
Hyperdip47-50-C7 (testset)other01 other
Hyperdip47-50-C8 (testset)other01 other
Hyperdip47-50-C9 (testset)other01 other
Hypodip-1 (testset)other01 other
Hypodip-2 (testset)other1e-040.9999 other
Hypodip-2M1 (testset)other5e-050.99995 other
Hypodip-C1 (testset)other01 other
Hypodip-C2 (testset)other01 other
Hypodip-C3 (testset)other01 other
Hypodip-C4 (testset)other01 other
Hypodip-C5 (testset)other01 other
Hypodip-C6 (testset)other01 other
MLL-1 (testset)other1e-050.99999 other
MLL-2 (testset)other01 other
MLL-3 (testset)other01 other
MLL-4 (testset)other01 other
MLL-5 (testset)other01 other
MLL-6 (testset)other3e-050.99997 other
MLL-7 (testset)other01 other
MLL-8 (testset)other1e-050.99999 other
MLL-2M1 (testset)other01 other
MLL-2M2 (testset)other1e-050.99999 other
MLL-C1 (testset)other01 other
MLL-C2 (testset)other0.000160.99984 other
MLL-C3 (testset)other01 other
MLL-C4 (testset)other01 other
MLL-C5 (testset)other01 other
MLL-C6 (testset)other01 other
MLL-R1 (testset)other2e-050.99998 other
MLL-R2 (testset)other01 other
MLL-R3 (testset)other01 other
MLL-R4 (testset)other01 other
Normal-1 (testset)other01 other
Normal-2 (testset)other01 other
Normal-3 (testset)other01 other
Normal-C1-N (testset)other01 other
Normal-C10 (testset)other01 other
Normal-C11-N (testset)other1e-050.99999 other
Normal-C12 (testset)other01 other
Normal-C2-N (testset)other01 other
Normal-C3-N (testset)other01 other
Normal-C4-N (testset)other01 other
Normal-C5 (testset)other0.002180.99782 other
Normal-C6 (testset)other01 other
Normal-C7-N (testset)other01 other
Normal-C8 (testset)other01 other
Normal-C9 (testset)other4e-050.99996 other
Normal-R1 (testset)other01 other
Normal-R2-N (testset)other1e-050.99999 other
Normal-R3 (testset)other7e-050.99993 other
Pseudodip-1 (testset)other01 other
Pseudodip-2 (testset)other01 other
Pseudodip-3 (testset)other6e-050.99994 other
Pseudodip-4 (testset)other0.000330.99967 other
Pseudodip-5 (testset)other2e-050.99998 other
Pseudodip-6 (testset)other01 other
Pseudodip-7 (testset)other0.000380.99962 other
Pseudodip-8-N (testset)other01 other
Pseudodip-9 (testset)other1e-050.99999 other
Pseudodip-C10 (testset)other01 other
Pseudodip-C11 (testset)other0.229210.77079 other
Pseudodip-C12 (testset)other8e-050.99992 other
Pseudodip-C13 (testset)other5e-050.99995 other
Pseudodip-C14 (testset)other0.000860.99914 other
Pseudodip-C15 (testset)other1e-050.99999 other
Pseudodip-C16-N (testset)other1e-050.99999 other
Pseudodip-C17 (testset)other01 other
Pseudodip-C18 (testset)other01 other
Pseudodip-C19 (testset)other01 other
Pseudodip-C1 (testset)other01 other
Pseudodip-C2-N (testset)other01 other
Pseudodip-C3 (testset)other01 other
Pseudodip-C4 (testset)other01 other
Pseudodip-C5 (testset)other01 other
Pseudodip-C6 (testset)other01 other
Pseudodip-C7 (testset)other01 other
Pseudodip-C8 (testset)other01 other
Pseudodip-C9 (testset)other01 other
Pseudodip-R1-N (testset)other01 other
T-ALL-10 (testset)T-ALL10 T-ALL
T-ALL-1 (testset)T-ALL10 T-ALL
T-ALL-2 (testset)T-ALL8e-050.99992 other
T-ALL-3 (testset)T-ALL10 T-ALL
T-ALL-4 (testset)T-ALL10 T-ALL
T-ALL-5 (testset)T-ALL10 T-ALL
T-ALL-6 (testset)T-ALL10 T-ALL
T-ALL-7 (testset)T-ALL10 T-ALL
T-ALL-8 (testset)T-ALL10 T-ALL
T-ALL-9 (testset)T-ALL10 T-ALL
T-ALL-2M1 (testset)T-ALL10 T-ALL
T-ALL-C10 (testset)T-ALL10 T-ALL
T-ALL-C11 (testset)T-ALL10 T-ALL
T-ALL-C12 (testset)T-ALL10 T-ALL
T-ALL-C13 (testset)T-ALL0.999955e-05 T-ALL
T-ALL-C14 (testset)T-ALL0.238410.76159 other
T-ALL-C15 (testset)T-ALL10 T-ALL
T-ALL-C16 (testset)T-ALL0.981090.01891 T-ALL
T-ALL-C17 (testset)T-ALL0.95830.0417 T-ALL
T-ALL-C18 (testset)T-ALL0.968980.03102 T-ALL
T-ALL-C19 (testset)T-ALL0.999991e-05 T-ALL
T-ALL-C1 (testset)T-ALL0.99590.0041 T-ALL
T-ALL-C20 (testset)T-ALL10 T-ALL
T-ALL-C21 (testset)T-ALL0.999946e-05 T-ALL
T-ALL-C22 (testset)T-ALL10 T-ALL
T-ALL-C23 (testset)T-ALL0.995450.00455 T-ALL
T-ALL-C24 (testset)T-ALL0.998390.00161 T-ALL
T-ALL-C25 (testset)T-ALL10 T-ALL
T-ALL-C26 (testset)T-ALL0.948490.05151 T-ALL
T-ALL-C2 (testset)T-ALL0.999991e-05 T-ALL
T-ALL-C3 (testset)T-ALL10 T-ALL
T-ALL-C4 (testset)T-ALL10 T-ALL
T-ALL-C5 (testset)T-ALL0.049040.95096 other
T-ALL-C6 (testset)T-ALL10 T-ALL
T-ALL-C7 (testset)T-ALL10 T-ALL
T-ALL-C8 (testset)T-ALL0.291830.70817 other
T-ALL-C9 (testset)T-ALL10 T-ALL
T-ALL-R1 (testset)T-ALL10 T-ALL
T-ALL-R2 (testset)T-ALL10 T-ALL
T-ALL-R3 (testset)T-ALL10 T-ALL
T-ALL-R4 (testset)T-ALL10 T-ALL
T-ALL-R5 (testset)T-ALL0.999870.00013 T-ALL
T-ALL-R6 (testset)T-ALL0.99982e-04 T-ALL
TEL-AML1-10 (testset)other1e-050.99999 other
TEL-AML1-11 (testset)other01 other
TEL-AML1-12 (testset)other7e-050.99993 other
TEL-AML1-13 (testset)other1e-040.9999 other
TEL-AML1-14 (testset)other01 other
TEL-AML1-1 (testset)other01 other
TEL-AML1-2 (testset)other01 other
TEL-AML1-3 (testset)other01 other
TEL-AML1-4 (testset)other01 other
TEL-AML1-5 (testset)other01 other
TEL-AML1-6 (testset)other01 other
TEL-AML1-7 (testset)other01 other
TEL-AML1-8 (testset)other01 other
TEL-AML1-9 (testset)other01 other
TEL-AML1-2M1 (testset)other01 other
TEL-AML1-2M2 (testset)other1e-050.99999 other
TEL-AML1-2M3 (testset)other01 other
TEL-AML1-2M4 (testset)other7e-050.99993 other
TEL-AML1-2M5 (testset)other1e-050.99999 other
TEL-AML1-C10 (testset)other01 other
TEL-AML1-C11 (testset)other1e-050.99999 other
TEL-AML1-C12 (testset)other01 other
TEL-AML1-C13 (testset)other01 other
TEL-AML1-C14 (testset)other01 other
TEL-AML1-C15 (testset)other01 other
TEL-AML1-C16 (testset)other01 other
TEL-AML1-C17 (testset)other01 other
TEL-AML1-C18 (testset)other01 other
TEL-AML1-C19 (testset)other01 other
TEL-AML1-C1 (testset)other01 other
TEL-AML1-C20 (testset)other01 other
TEL-AML1-C21 (testset)other01 other
TEL-AML1-C22 (testset)other0.000380.99962 other
TEL-AML1-C23 (testset)other1e-050.99999 other
TEL-AML1-C24 (testset)other01 other
TEL-AML1-C25 (testset)other01 other
TEL-AML1-C26 (testset)other01 other
TEL-AML1-C27 (testset)other01 other
TEL-AML1-C28 (testset)other01 other
TEL-AML1-C29 (testset)other01 other
TEL-AML1-C2 (testset)other1e-050.99999 other
TEL-AML1-C30 (testset)other01 other
TEL-AML1-C31 (testset)other01 other
TEL-AML1-C32 (testset)other01 other
TEL-AML1-C33 (testset)other01 other
TEL-AML1-C34 (testset)other01 other
TEL-AML1-C35 (testset)other2e-050.99998 other
TEL-AML1-C36 (testset)other01 other
TEL-AML1-C37 (testset)other01 other
TEL-AML1-C38 (testset)other01 other
TEL-AML1-C39 (testset)other01 other
TEL-AML1-C3 (testset)other01 other
TEL-AML1-C40 (testset)other1e-050.99999 other
TEL-AML1-C41 (testset)other01 other
TEL-AML1-C42 (testset)other1e-050.99999 other
TEL-AML1-C43 (testset)other01 other
TEL-AML1-C44 (testset)other2e-050.99998 other
TEL-AML1-C45 (testset)other01 other
TEL-AML1-C46 (testset)other01 other
TEL-AML1-C47 (testset)other01 other
TEL-AML1-C48 (testset)other3e-050.99997 other
TEL-AML1-C49 (testset)other01 other
TEL-AML1-C4 (testset)other01 other
TEL-AML1-C50 (testset)other1e-050.99999 other
TEL-AML1-C51 (testset)other01 other
TEL-AML1-C52 (testset)other01 other
TEL-AML1-C53 (testset)other0.002130.99787 other
TEL-AML1-C54 (testset)other01 other
TEL-AML1-C55 (testset)other0.005040.99496 other
TEL-AML1-C56 (testset)other2e-050.99998 other
TEL-AML1-C57 (testset)other1e-050.99999 other
TEL-AML1-C5 (testset)other1e-050.99999 other
TEL-AML1-C6 (testset)other01 other
TEL-AML1-C7 (testset)other01 other
TEL-AML1-C8 (testset)other01 other
TEL-AML1-C9 (testset)other1e-050.99999 other
TEL-AML1-R1 (testset)other0.000110.99989 other
TEL-AML1-R2 (testset)other4e-050.99996 other
TEL-AML1-R3 (testset)other01 other

 


Generated by StAM on Tue Sep 7 18:39:49 2004