GO:0008152

GO:0008152

metabolism (annotated genes)

Biological Process

Parent node

GO:0008152	metabolism

This leaf node contains 214 genes

The following 21 of these are used in classification:

	Symbol	Genename	T-ALL score	other score
31891_at	CHI3L2	chitinase 3-like 2	1.4655	-0.2249
38315_at	ALDH1A2	aldehyde dehydrogenase 1 family, member A2	0.9737	-0.1494
35303_at	INSIG1	insulin induced gene 1	0.9067	-0.1391
39814_s_at	DHRS7	dehydrogenase/reductase (SDR family) member 7	0.6911	-0.106
32570_at	HPGD	hydroxyprostaglandin dehydrogenase 15-(NAD)	0.3894	-0.0598
38684_at	ATP2C1	ATPase, Ca++ transporting, type 2C, member 1	0.3809	-0.0584
33264_at	HSRTSBETA	rTS beta protein	0.3123	-0.0479
33369_at	SC4MOL	sterol-C4-methyl oxidase-like	0.2828	-0.0434
34857_at	AFURS1	ATPase family homolog up-regulated in senescence cells	0.2395	-0.0368
32332_at	IDH2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	0.2391	-0.0367
35648_at	AUTS2	autism susceptibility candidate 2	-0.1878	0.0288
32111_at	CDYL	chromodomain protein, Y-like	-0.1548	0.0238
40866_at	NIPSNAP1	nipsnap homolog 1 (C. elegans)	0.1311	-0.0201
36635_at	ATP11B	ATPase, Class VI, type 11B	0.0992	-0.0152
33263_at	HSRTSBETA	rTS beta protein	0.092	-0.0141
33408_at	KIAA0934	KIAA0934 protein	-0.0909	0.0139
40782_at	DHRS3	dehydrogenase/reductase (SDR family) member 3	-0.0645	0.0099
824_at	GSTO1	glutathione S-transferase omega 1	0.0634	-0.0097
39108_at	LSS	lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)	0.0315	-0.0048
41221_at	PGAM1	phosphoglycerate mutase 1 (brain)	0.0051	-8e-04
37373_at	UGP2	UDP-glucose pyrophosphorylase 2	0.0046	-7e-04

Performance on training data

• Error rate: 0.00917
• Performance: 0.04769
• Redundancy: 4.77531

	Sensitivity	Specificity
T-ALL	0.93103	1
other	1	0.93103

Performance on test data

• Error rate: 0.02752
• Performance: 0.20342
• Redundancy: 4.73091

	Sensitivity	Specificity
T-ALL	0.78571	1
other	1	0.78571

Predictions

	Class	T-ALL	other	Predictionn
BCR-ABL-1	other	0.00475	0.99525	other
BCR-ABL-2	other	0.0024	0.9976	other
BCR-ABL-3 (testset)	other	0.00411	0.99589	other
BCR-ABL-4	other	0.0041	0.9959	other
BCR-ABL-5	other	0.00157	0.99843	other
BCR-ABL-6 (testset)	other	0.00224	0.99776	other
BCR-ABL-7 (testset)	other	0.00261	0.99739	other
BCR-ABL-8 (testset)	other	0.00013	0.99987	other
BCR-ABL-9 (testset)	other	0.00163	0.99837	other
BCR-ABL-C1 (testset)	other	0.01702	0.98298	other
BCR-ABL-Hyperdip-10 (testset)	other	0.00425	0.99575	other
BCR-ABL-Hyperdip-R5	other	0.00361	0.99639	other
BCR-ABL-R1	other	0.00483	0.99517	other
BCR-ABL-R2	other	0.01055	0.98945	other
BCR-ABL-R3 (testset)	other	0.00538	0.99462	other
E2A-PBX1-10	other	0.01192	0.98808	other
E2A-PBX1-11	other	0.00794	0.99206	other
E2A-PBX1-12 (testset)	other	0.00195	0.99805	other
E2A-PBX1-13	other	0.00575	0.99425	other
E2A-PBX1-1	other	0.0082	0.9918	other
E2A-PBX1-2	other	0.00648	0.99352	other
E2A-PBX1-3	other	0.0025	0.9975	other
E2A-PBX1-4 (testset)	other	0.00074	0.99926	other
E2A-PBX1-5	other	0.01551	0.98449	other
E2A-PBX1-6	other	0.00124	0.99876	other
E2A-PBX1-7	other	0.0022	0.9978	other
E2A-PBX1-8	other	0.00314	0.99686	other
E2A-PBX1-9	other	0.01714	0.98286	other
E2A-PBX1-2M1	other	0.00684	0.99316	other
E2A-PBX1-C10	other	0.00313	0.99687	other
E2A-PBX1-C11	other	0.01218	0.98782	other
E2A-PBX1-C12	other	0.00887	0.99113	other
E2A-PBX1-C1	other	0.00248	0.99752	other
E2A-PBX1-C2	other	0.00492	0.99508	other
E2A-PBX1-C3 (testset)	other	0.00514	0.99486	other
E2A-PBX1-C4	other	0.0048	0.9952	other
E2A-PBX1-C5 (testset)	other	0.00075	0.99925	other
E2A-PBX1-C6	other	0.00183	0.99817	other
E2A-PBX1-C7	other	0.00496	0.99504	other
E2A-PBX1-C8	other	0.02296	0.97704	other
E2A-PBX1-C9	other	0.0013	0.9987	other
E2A-PBX1-R1	other	0.00278	0.99722	other
Hyperdip-50-10	other	0.00088	0.99912	other
Hyperdip-50-11 (testset)	other	0.00354	0.99646	other
Hyperdip-50-12	other	0.00041	0.99959	other
Hyperdip-50-13 (testset)	other	0.00585	0.99415	other
Hyperdip-50-14	other	0.00218	0.99782	other
Hyperdip-50-1	other	0.00193	0.99807	other
Hyperdip-50-2	other	0.00188	0.99812	other
Hyperdip-50-3 (testset)	other	0.0074	0.9926	other
Hyperdip-50-4 (testset)	other	0.00309	0.99691	other
Hyperdip-50-5 (testset)	other	0.0023	0.9977	other
Hyperdip-50-6	other	0.00106	0.99894	other
Hyperdip-50-7	other	0.00038	0.99962	other
Hyperdip-50-8 (testset)	other	0.00039	0.99961	other
Hyperdip-50-9	other	0.00037	0.99963	other
Hyperdip-50-2M1	other	0.00269	0.99731	other
Hyperdip-50-2M2 (testset)	other	0.00066	0.99934	other
Hyperdip-50-C10	other	0.00437	0.99563	other
Hyperdip-50-C11 (testset)	other	0.00375	0.99625	other
Hyperdip-50-C12	other	0.00214	0.99786	other
Hyperdip-50-C13	other	0.00486	0.99514	other
Hyperdip-50-C14	other	0.00211	0.99789	other
Hyperdip-50-C15	other	0.0015	0.9985	other
Hyperdip-50-C16	other	0.00326	0.99674	other
Hyperdip-50-C17	other	0.02058	0.97942	other
Hyperdip-50-C18	other	0.00472	0.99528	other
Hyperdip-50-C19 (testset)	other	0.00066	0.99934	other
Hyperdip-50-C1	other	0.00369	0.99631	other
Hyperdip-50-C20	other	0.00146	0.99854	other
Hyperdip-50-C21	other	0.02541	0.97459	other
Hyperdip-50-C22 (testset)	other	0.00275	0.99725	other
Hyperdip-50-C23	other	0.00277	0.99723	other
Hyperdip-50-C24	other	0.00962	0.99038	other
Hyperdip-50-C25	other	0.02268	0.97732	other
Hyperdip-50-C26	other	0.00145	0.99855	other
Hyperdip-50-C27-N	other	0.00281	0.99719	other
Hyperdip-50-C28	other	0.00405	0.99595	other
Hyperdip-50-C29 (testset)	other	0.00307	0.99693	other
Hyperdip-50-C2 (testset)	other	0.00838	0.99162	other
Hyperdip-50-C30	other	0.00273	0.99727	other
Hyperdip-50-C31	other	0.00025	0.99975	other
Hyperdip-50-C32	other	0.00241	0.99759	other
Hyperdip-50-C33	other	0.00107	0.99893	other
Hyperdip-50-C34	other	0.00267	0.99733	other
Hyperdip-50-C35 (testset)	other	0.00848	0.99152	other
Hyperdip-50-C36	other	0.02652	0.97348	other
Hyperdip-50-C37	other	0.00271	0.99729	other
Hyperdip-50-C38	other	0.02629	0.97371	other
Hyperdip-50-C39 (testset)	other	0.00482	0.99518	other
Hyperdip-50-C3	other	0.00122	0.99878	other
Hyperdip-50-C40	other	0.00101	0.99899	other
Hyperdip-50-C41 (testset)	other	0.00209	0.99791	other
Hyperdip-50-C42 (testset)	other	0.00493	0.99507	other
Hyperdip-50-C43	other	0.00287	0.99713	other
Hyperdip-50-C4	other	0.00144	0.99856	other
Hyperdip-50-C5 (testset)	other	0.00368	0.99632	other
Hyperdip-50-C6	other	0.01314	0.98686	other
Hyperdip-50-C7 (testset)	other	0.00088	0.99912	other
Hyperdip-50-C8 (testset)	other	0.00087	0.99913	other
Hyperdip-50-C9	other	0.004	0.996	other
Hyperdip-50-R1	other	0.00742	0.99258	other
Hyperdip-50-R2 (testset)	other	0.00299	0.99701	other
Hyperdip-50-R3	other	0.00082	0.99918	other
Hyperdip-50-R4	other	0.00656	0.99344	other
Hyperdip-50-R5 (testset)	other	0.00371	0.99629	other
Hyperdip47-50-1	other	0.00058	0.99942	other
Hyperdip47-50-2	other	0.00749	0.99251	other
Hyperdip47-50-3 (testset)	other	0.14421	0.85579	other
Hyperdip47-50-2M1 (testset)	other	0.00362	0.99638	other
Hyperdip47-50-C10 (testset)	other	0.00123	0.99877	other
Hyperdip47-50-C11	other	0.00112	0.99888	other
Hyperdip47-50-C12	other	0.05366	0.94634	other
Hyperdip47-50-C13	other	0.0196	0.9804	other
Hyperdip47-50-C14-N (testset)	other	0.02154	0.97846	other
Hyperdip47-50-C15 (testset)	other	0.00027	0.99973	other
Hyperdip47-50-C16	other	0.00177	0.99823	other
Hyperdip47-50-C17	other	0.00303	0.99697	other
Hyperdip47-50-C18	other	0.00393	0.99607	other
Hyperdip47-50-C19	other	0.00462	0.99538	other
Hyperdip47-50-C1 (testset)	other	0.00137	0.99863	other
Hyperdip47-50-C2 (testset)	other	0.00835	0.99165	other
Hyperdip47-50-C3-N (testset)	other	0.00216	0.99784	other
Hyperdip47-50-C4	other	0.00025	0.99975	other
Hyperdip47-50-C5 (testset)	other	0.06316	0.93684	other
Hyperdip47-50-C6 (testset)	other	0.00334	0.99666	other
Hyperdip47-50-C7	other	0.00052	0.99948	other
Hyperdip47-50-C8	other	0.00102	0.99898	other
Hyperdip47-50-C9	other	0.00075	0.99925	other
Hypodip-1 (testset)	other	0.00046	0.99954	other
Hypodip-2	other	0.00556	0.99444	other
Hypodip-2M1 (testset)	other	0.00244	0.99756	other
Hypodip-C1	other	0.00074	0.99926	other
Hypodip-C2 (testset)	other	0.00068	0.99932	other
Hypodip-C3	other	0.01723	0.98277	other
Hypodip-C4	other	0.00019	0.99981	other
Hypodip-C5	other	0.0023	0.9977	other
Hypodip-C6 (testset)	other	0.00545	0.99455	other
MLL-1 (testset)	other	0.00814	0.99186	other
MLL-2	other	0.00218	0.99782	other
MLL-3 (testset)	other	0.05719	0.94281	other
MLL-4	other	0.00207	0.99793	other
MLL-5 (testset)	other	0.00053	0.99947	other
MLL-6 (testset)	other	0.00186	0.99814	other
MLL-7	other	0.00346	0.99654	other
MLL-8 (testset)	other	0.00221	0.99779	other
MLL-2M1	other	0.00166	0.99834	other
MLL-2M2 (testset)	other	0.0026	0.9974	other
MLL-C1	other	0.00159	0.99841	other
MLL-C2	other	0.00783	0.99217	other
MLL-C3 (testset)	other	0.01098	0.98902	other
MLL-C4	other	0.00208	0.99792	other
MLL-C5	other	0.02936	0.97064	other
MLL-C6	other	0.02129	0.97871	other
MLL-R1 (testset)	other	0.01352	0.98648	other
MLL-R2	other	0.00151	0.99849	other
MLL-R3	other	0.00773	0.99227	other
MLL-R4	other	0.00424	0.99576	other
Normal-1	other	0.00033	0.99967	other
Normal-2	other	0.01261	0.98739	other
Normal-3	other	0.00045	0.99955	other
Normal-C1-N	other	0.00229	0.99771	other
Normal-C10	other	0.00229	0.99771	other
Normal-C11-N (testset)	other	0.00392	0.99608	other
Normal-C12 (testset)	other	1e-04	0.9999	other
Normal-C2-N	other	0.00336	0.99664	other
Normal-C3-N	other	0.00252	0.99748	other
Normal-C4-N	other	0.00279	0.99721	other
Normal-C5	other	0.00558	0.99442	other
Normal-C6 (testset)	other	0.00049	0.99951	other
Normal-C7-N (testset)	other	0.00474	0.99526	other
Normal-C8	other	0.04021	0.95979	other
Normal-C9 (testset)	other	0.00189	0.99811	other
Normal-R1 (testset)	other	0.02693	0.97307	other
Normal-R2-N	other	0.00346	0.99654	other
Normal-R3	other	0.01492	0.98508	other
Pseudodip-1	other	0.0011	0.9989	other
Pseudodip-2	other	0.00956	0.99044	other
Pseudodip-3	other	0.00081	0.99919	other
Pseudodip-4 (testset)	other	0.00685	0.99315	other
Pseudodip-5 (testset)	other	0.0017	0.9983	other
Pseudodip-6 (testset)	other	0.00112	0.99888	other
Pseudodip-7	other	0.00743	0.99257	other
Pseudodip-8-N	other	0.00602	0.99398	other
Pseudodip-9	other	0.00419	0.99581	other
Pseudodip-C10 (testset)	other	0.0065	0.9935	other
Pseudodip-C11 (testset)	other	0.00425	0.99575	other
Pseudodip-C12 (testset)	other	0.00949	0.99051	other
Pseudodip-C13	other	0.00802	0.99198	other
Pseudodip-C14 (testset)	other	0.01071	0.98929	other
Pseudodip-C15	other	0.00385	0.99615	other
Pseudodip-C16-N (testset)	other	0.00233	0.99767	other
Pseudodip-C17	other	0.0022	0.9978	other
Pseudodip-C18	other	0.00986	0.99014	other
Pseudodip-C19	other	0.00152	0.99848	other
Pseudodip-C1	other	0.00197	0.99803	other
Pseudodip-C2-N	other	0.00086	0.99914	other
Pseudodip-C3	other	0.00202	0.99798	other
Pseudodip-C4	other	0.00056	0.99944	other
Pseudodip-C5 (testset)	other	0.00456	0.99544	other
Pseudodip-C6	other	0.0018	0.9982	other
Pseudodip-C7	other	0.00079	0.99921	other
Pseudodip-C8	other	0.00236	0.99764	other
Pseudodip-C9	other	0.00345	0.99655	other
Pseudodip-R1-N (testset)	other	0.01151	0.98849	other
T-ALL-10 (testset)	T-ALL	0.99523	0.00477	T-ALL
T-ALL-1 (testset)	T-ALL	0.98281	0.01719	T-ALL
T-ALL-2 (testset)	T-ALL	0.00605	0.99395	other
T-ALL-3	T-ALL	0.99998	2e-05	T-ALL
T-ALL-4 (testset)	T-ALL	0.99997	3e-05	T-ALL
T-ALL-5 (testset)	T-ALL	0.99942	0.00058	T-ALL
T-ALL-6	T-ALL	0.99748	0.00252	T-ALL
T-ALL-7 (testset)	T-ALL	0.99972	0.00028	T-ALL
T-ALL-8 (testset)	T-ALL	0.99248	0.00752	T-ALL
T-ALL-9	T-ALL	0.99033	0.00967	T-ALL
T-ALL-2M1	T-ALL	0.98233	0.01767	T-ALL
T-ALL-C10	T-ALL	1	0	T-ALL
T-ALL-C11	T-ALL	0.97526	0.02474	T-ALL
T-ALL-C12	T-ALL	0.99067	0.00933	T-ALL
T-ALL-C13	T-ALL	0.99985	0.00015	T-ALL
T-ALL-C14	T-ALL	0.22096	0.77904	other
T-ALL-C15 (testset)	T-ALL	0.99995	5e-05	T-ALL
T-ALL-C16 (testset)	T-ALL	0.31432	0.68568	other
T-ALL-C17	T-ALL	0.96126	0.03874	T-ALL
T-ALL-C18	T-ALL	0.32688	0.67312	other
T-ALL-C19	T-ALL	0.96051	0.03949	T-ALL
T-ALL-C1	T-ALL	0.69344	0.30656	T-ALL
T-ALL-C20	T-ALL	1	0	T-ALL
T-ALL-C21	T-ALL	0.62051	0.37949	T-ALL
T-ALL-C22 (testset)	T-ALL	0.99995	5e-05	T-ALL
T-ALL-C23	T-ALL	0.66137	0.33863	T-ALL
T-ALL-C24 (testset)	T-ALL	0.99954	0.00046	T-ALL
T-ALL-C25 (testset)	T-ALL	0.97938	0.02062	T-ALL
T-ALL-C26	T-ALL	0.94509	0.05491	T-ALL
T-ALL-C2	T-ALL	1	0	T-ALL
T-ALL-C3	T-ALL	1	0	T-ALL
T-ALL-C4	T-ALL	0.97172	0.02828	T-ALL
T-ALL-C5 (testset)	T-ALL	0.02721	0.97279	other
T-ALL-C6	T-ALL	0.95555	0.04445	T-ALL
T-ALL-C7 (testset)	T-ALL	0.88713	0.11287	T-ALL
T-ALL-C8	T-ALL	0.9948	0.0052	T-ALL
T-ALL-C9	T-ALL	0.99983	0.00017	T-ALL
T-ALL-R1	T-ALL	0.99758	0.00242	T-ALL
T-ALL-R2	T-ALL	0.99096	0.00904	T-ALL
T-ALL-R3	T-ALL	0.99949	0.00051	T-ALL
T-ALL-R4	T-ALL	1	0	T-ALL
T-ALL-R5	T-ALL	0.95139	0.04861	T-ALL
T-ALL-R6	T-ALL	0.99124	0.00876	T-ALL
TEL-AML1-10	other	0.0068	0.9932	other
TEL-AML1-11 (testset)	other	0.00305	0.99695	other
TEL-AML1-12	other	0.00306	0.99694	other
TEL-AML1-13 (testset)	other	0.0044	0.9956	other
TEL-AML1-14	other	0.00043	0.99957	other
TEL-AML1-1	other	0.00089	0.99911	other
TEL-AML1-2	other	0.00156	0.99844	other
TEL-AML1-3	other	0.0036	0.9964	other
TEL-AML1-4	other	0.00059	0.99941	other
TEL-AML1-5 (testset)	other	0.00031	0.99969	other
TEL-AML1-6	other	0.0013	0.9987	other
TEL-AML1-7	other	0.00103	0.99897	other
TEL-AML1-8 (testset)	other	8e-04	0.9992	other
TEL-AML1-9	other	0.00219	0.99781	other
TEL-AML1-2M1 (testset)	other	0.01656	0.98344	other
TEL-AML1-2M2	other	0.00163	0.99837	other
TEL-AML1-2M3	other	0.00078	0.99922	other
TEL-AML1-2M4 (testset)	other	0.00277	0.99723	other
TEL-AML1-2M5	other	7e-04	0.9993	other
TEL-AML1-C10	other	0.00081	0.99919	other
TEL-AML1-C11	other	0.00396	0.99604	other
TEL-AML1-C12	other	0.00278	0.99722	other
TEL-AML1-C13	other	0.00049	0.99951	other
TEL-AML1-C14 (testset)	other	0.00218	0.99782	other
TEL-AML1-C15	other	0.00075	0.99925	other
TEL-AML1-C16	other	0.00576	0.99424	other
TEL-AML1-C17	other	0.00084	0.99916	other
TEL-AML1-C18	other	0.00154	0.99846	other
TEL-AML1-C19 (testset)	other	0.00226	0.99774	other
TEL-AML1-C1 (testset)	other	0.00123	0.99877	other
TEL-AML1-C20 (testset)	other	0.00149	0.99851	other
TEL-AML1-C21	other	0.00143	0.99857	other
TEL-AML1-C22	other	0.00612	0.99388	other
TEL-AML1-C23 (testset)	other	0.00251	0.99749	other
TEL-AML1-C24	other	0.00187	0.99813	other
TEL-AML1-C25	other	0.00141	0.99859	other
TEL-AML1-C26 (testset)	other	0.02354	0.97646	other
TEL-AML1-C27	other	0.00244	0.99756	other
TEL-AML1-C28 (testset)	other	0.00038	0.99962	other
TEL-AML1-C29	other	0.00277	0.99723	other
TEL-AML1-C2	other	0.00162	0.99838	other
TEL-AML1-C30	other	0.00569	0.99431	other
TEL-AML1-C31 (testset)	other	0.00197	0.99803	other
TEL-AML1-C32	other	0.01049	0.98951	other
TEL-AML1-C33 (testset)	other	0.00028	0.99972	other
TEL-AML1-C34	other	0.00391	0.99609	other
TEL-AML1-C35	other	0.0131	0.9869	other
TEL-AML1-C36 (testset)	other	0.0024	0.9976	other
TEL-AML1-C37	other	0.00504	0.99496	other
TEL-AML1-C38	other	0.00064	0.99936	other
TEL-AML1-C39	other	7e-04	0.9993	other
TEL-AML1-C3	other	0.00057	0.99943	other
TEL-AML1-C40	other	0.00608	0.99392	other
TEL-AML1-C41	other	0.00352	0.99648	other
TEL-AML1-C42	other	0.00394	0.99606	other
TEL-AML1-C43	other	0.00062	0.99938	other
TEL-AML1-C44	other	0.00872	0.99128	other
TEL-AML1-C45	other	0.00025	0.99975	other
TEL-AML1-C46	other	0.00044	0.99956	other
TEL-AML1-C47	other	0.00038	0.99962	other
TEL-AML1-C48	other	0.0076	0.9924	other
TEL-AML1-C49 (testset)	other	0.00147	0.99853	other
TEL-AML1-C4 (testset)	other	0.00058	0.99942	other
TEL-AML1-C50	other	0.00017	0.99983	other
TEL-AML1-C51 (testset)	other	0.00633	0.99367	other
TEL-AML1-C52	other	0.00106	0.99894	other
TEL-AML1-C53 (testset)	other	0.00584	0.99416	other
TEL-AML1-C54	other	0.00026	0.99974	other
TEL-AML1-C55 (testset)	other	0.00159	0.99841	other
TEL-AML1-C56	other	0.01968	0.98032	other
TEL-AML1-C57	other	0.00271	0.99729	other
TEL-AML1-C5 (testset)	other	0.00369	0.99631	other
TEL-AML1-C6	other	0.00128	0.99872	other
TEL-AML1-C7	other	0.00243	0.99757	other
TEL-AML1-C8	other	0.00263	0.99737	other
TEL-AML1-C9	other	0.0021	0.9979	other
TEL-AML1-R1 (testset)	other	0.00045	0.99955	other
TEL-AML1-R2 (testset)	other	0.01336	0.98664	other
TEL-AML1-R3	other	4e-04	0.9996	other