GO:0006470

GO:0006470

protein amino acid dephosphorylation (annotated genes)

Biological Process

Parent nodes

GO:0006464	protein modification
GO:0016311	dephosphorylation

This leaf node contains 140 genes

The following 16 of these are used in classification:

	Symbol	Genename	T-ALL score	other score
1760_s_at	PTPN7	protein tyrosine phosphatase, non-receptor type 7	1.1541	-0.1771
1241_at	PTP4A2	protein tyrosine phosphatase type IVA, member 2	1.1397	-0.1749
39672_at	PTPN7	protein tyrosine phosphatase, non-receptor type 7	1.0748	-0.1649
38415_at	PTP4A2	protein tyrosine phosphatase type IVA, member 2	0.9192	-0.141
36808_at	PTPN22	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	0.6351	-0.0974
40518_at	PTPRC	protein tyrosine phosphatase, receptor type, C	0.463	-0.071
1150_at	PTPRE	protein tyrosine phosphatase, receptor type, E	-0.4627	0.071
40520_g_at	PTPRC	protein tyrosine phosphatase, receptor type, C	0.4548	-0.0698
32916_at	PTPRE	protein tyrosine phosphatase, receptor type, E	-0.3968	0.0609
1347_at	CDC25B	cell division cycle 25B	0.2343	-0.0359
40519_at	PTPRC	protein tyrosine phosphatase, receptor type, C	0.2116	-0.0325
1005_at	DUSP1	dual specificity phosphatase 1	-0.1881	0.0289
33453_at	PTPN18	protein tyrosine phosphatase, non-receptor type 18 (brain-derived)	-0.1535	0.0236
160041_at	PTPN18	protein tyrosine phosphatase, non-receptor type 18 (brain-derived)	-0.1256	0.0193
41193_at	DUSP6	dual specificity phosphatase 6	-0.0977	0.015
31885_at	PTPN3	protein tyrosine phosphatase, non-receptor type 3	0.034	-0.0052

Performance on training data

• Error rate: 0.00917
• Performance: 0.07225
• Redundancy: 5.23549

	Sensitivity	Specificity
T-ALL	0.93103	1
other	1	0.93103

Performance on test data

• Error rate: 0.0367
• Performance: 0.26054
• Redundancy: 5.05796

	Sensitivity	Specificity
T-ALL	0.85714	0.97895
other	0.97895	0.85714

Predictions

	Class	T-ALL	other	Predictionn
BCR-ABL-1	other	0.14688	0.85312	other
BCR-ABL-2	other	0.00222	0.99778	other
BCR-ABL-3 (testset)	other	0.0461	0.9539	other
BCR-ABL-4	other	0.00072	0.99928	other
BCR-ABL-5	other	0.00148	0.99852	other
BCR-ABL-6 (testset)	other	5e-04	0.9995	other
BCR-ABL-7 (testset)	other	0.03101	0.96899	other
BCR-ABL-8 (testset)	other	0.00087	0.99913	other
BCR-ABL-9 (testset)	other	0.00029	0.99971	other
BCR-ABL-C1 (testset)	other	0.00147	0.99853	other
BCR-ABL-Hyperdip-10 (testset)	other	1e-05	0.99999	other
BCR-ABL-Hyperdip-R5	other	7e-05	0.99993	other
BCR-ABL-R1	other	0.02793	0.97207	other
BCR-ABL-R2	other	0.00413	0.99587	other
BCR-ABL-R3 (testset)	other	0.00842	0.99158	other
E2A-PBX1-10	other	0.00357	0.99643	other
E2A-PBX1-11	other	0.00037	0.99963	other
E2A-PBX1-12 (testset)	other	0.00173	0.99827	other
E2A-PBX1-13	other	0.00322	0.99678	other
E2A-PBX1-1	other	0.01697	0.98303	other
E2A-PBX1-2	other	0.00015	0.99985	other
E2A-PBX1-3	other	0.00046	0.99954	other
E2A-PBX1-4 (testset)	other	0.00026	0.99974	other
E2A-PBX1-5	other	0.00032	0.99968	other
E2A-PBX1-6	other	0.00043	0.99957	other
E2A-PBX1-7	other	0.00061	0.99939	other
E2A-PBX1-8	other	0.00022	0.99978	other
E2A-PBX1-9	other	0.00158	0.99842	other
E2A-PBX1-2M1	other	0.0207	0.9793	other
E2A-PBX1-C10	other	0.00364	0.99636	other
E2A-PBX1-C11	other	0.00027	0.99973	other
E2A-PBX1-C12	other	0.00742	0.99258	other
E2A-PBX1-C1	other	0.00526	0.99474	other
E2A-PBX1-C2	other	0.00209	0.99791	other
E2A-PBX1-C3 (testset)	other	0.01015	0.98985	other
E2A-PBX1-C4	other	0.00161	0.99839	other
E2A-PBX1-C5 (testset)	other	0.00043	0.99957	other
E2A-PBX1-C6	other	1e-04	0.9999	other
E2A-PBX1-C7	other	0.0066	0.9934	other
E2A-PBX1-C8	other	0.17147	0.82853	other
E2A-PBX1-C9	other	0.00072	0.99928	other
E2A-PBX1-R1	other	0.00148	0.99852	other
Hyperdip-50-10	other	9e-05	0.99991	other
Hyperdip-50-11 (testset)	other	0.01498	0.98502	other
Hyperdip-50-12	other	0.00106	0.99894	other
Hyperdip-50-13 (testset)	other	9e-05	0.99991	other
Hyperdip-50-14	other	0.00028	0.99972	other
Hyperdip-50-1	other	4e-05	0.99996	other
Hyperdip-50-2	other	0.00113	0.99887	other
Hyperdip-50-3 (testset)	other	5e-05	0.99995	other
Hyperdip-50-4 (testset)	other	0.00709	0.99291	other
Hyperdip-50-5 (testset)	other	2e-05	0.99998	other
Hyperdip-50-6	other	0.00016	0.99984	other
Hyperdip-50-7	other	0.00271	0.99729	other
Hyperdip-50-8 (testset)	other	0.00147	0.99853	other
Hyperdip-50-9	other	1e-05	0.99999	other
Hyperdip-50-2M1	other	0.00032	0.99968	other
Hyperdip-50-2M2 (testset)	other	0.00015	0.99985	other
Hyperdip-50-C10	other	0.0026	0.9974	other
Hyperdip-50-C11 (testset)	other	0.00042	0.99958	other
Hyperdip-50-C12	other	0.00056	0.99944	other
Hyperdip-50-C13	other	5e-05	0.99995	other
Hyperdip-50-C14	other	0.0048	0.9952	other
Hyperdip-50-C15	other	0.00058	0.99942	other
Hyperdip-50-C16	other	3e-05	0.99997	other
Hyperdip-50-C17	other	0.00106	0.99894	other
Hyperdip-50-C18	other	0.00038	0.99962	other
Hyperdip-50-C19 (testset)	other	0.03364	0.96636	other
Hyperdip-50-C1	other	0.00022	0.99978	other
Hyperdip-50-C20	other	0.00023	0.99977	other
Hyperdip-50-C21	other	0.0019	0.9981	other
Hyperdip-50-C22 (testset)	other	0.00251	0.99749	other
Hyperdip-50-C23	other	4e-05	0.99996	other
Hyperdip-50-C24	other	0.00319	0.99681	other
Hyperdip-50-C25	other	0.00037	0.99963	other
Hyperdip-50-C26	other	9e-05	0.99991	other
Hyperdip-50-C27-N	other	0.00099	0.99901	other
Hyperdip-50-C28	other	0.00019	0.99981	other
Hyperdip-50-C29 (testset)	other	0.00075	0.99925	other
Hyperdip-50-C2 (testset)	other	0.00288	0.99712	other
Hyperdip-50-C30	other	4e-04	0.9996	other
Hyperdip-50-C31	other	0.00011	0.99989	other
Hyperdip-50-C32	other	6e-05	0.99994	other
Hyperdip-50-C33	other	0	1	other
Hyperdip-50-C34	other	0.00045	0.99955	other
Hyperdip-50-C35 (testset)	other	0.00043	0.99957	other
Hyperdip-50-C36	other	0.00063	0.99937	other
Hyperdip-50-C37	other	0.00138	0.99862	other
Hyperdip-50-C38	other	0.00012	0.99988	other
Hyperdip-50-C39 (testset)	other	0.00323	0.99677	other
Hyperdip-50-C3	other	7e-05	0.99993	other
Hyperdip-50-C40	other	4e-05	0.99996	other
Hyperdip-50-C41 (testset)	other	9e-05	0.99991	other
Hyperdip-50-C42 (testset)	other	6e-04	0.9994	other
Hyperdip-50-C43	other	0.00043	0.99957	other
Hyperdip-50-C4	other	2e-05	0.99998	other
Hyperdip-50-C5 (testset)	other	0.00033	0.99967	other
Hyperdip-50-C6	other	0.00045	0.99955	other
Hyperdip-50-C7 (testset)	other	0.00019	0.99981	other
Hyperdip-50-C8 (testset)	other	1e-05	0.99999	other
Hyperdip-50-C9	other	3e-05	0.99997	other
Hyperdip-50-R1	other	0.00186	0.99814	other
Hyperdip-50-R2 (testset)	other	4e-05	0.99996	other
Hyperdip-50-R3	other	2e-05	0.99998	other
Hyperdip-50-R4	other	0.00093	0.99907	other
Hyperdip-50-R5 (testset)	other	0.00108	0.99892	other
Hyperdip47-50-1	other	0.00319	0.99681	other
Hyperdip47-50-2	other	0.00728	0.99272	other
Hyperdip47-50-3 (testset)	other	0.88631	0.11369	T-ALL
Hyperdip47-50-2M1 (testset)	other	0.00023	0.99977	other
Hyperdip47-50-C10 (testset)	other	0.00112	0.99888	other
Hyperdip47-50-C11	other	0.00049	0.99951	other
Hyperdip47-50-C12	other	0.05446	0.94554	other
Hyperdip47-50-C13	other	0.17038	0.82962	other
Hyperdip47-50-C14-N (testset)	other	0.00634	0.99366	other
Hyperdip47-50-C15 (testset)	other	3e-04	0.9997	other
Hyperdip47-50-C16	other	0.00254	0.99746	other
Hyperdip47-50-C17	other	0.00597	0.99403	other
Hyperdip47-50-C18	other	6e-04	0.9994	other
Hyperdip47-50-C19	other	0.00868	0.99132	other
Hyperdip47-50-C1 (testset)	other	0.00744	0.99256	other
Hyperdip47-50-C2 (testset)	other	0.0075	0.9925	other
Hyperdip47-50-C3-N (testset)	other	0.00077	0.99923	other
Hyperdip47-50-C4	other	0.00029	0.99971	other
Hyperdip47-50-C5 (testset)	other	0.05676	0.94324	other
Hyperdip47-50-C6 (testset)	other	0.00026	0.99974	other
Hyperdip47-50-C7	other	0.00014	0.99986	other
Hyperdip47-50-C8	other	0.00087	0.99913	other
Hyperdip47-50-C9	other	0.00439	0.99561	other
Hypodip-1 (testset)	other	0.01927	0.98073	other
Hypodip-2	other	0.0268	0.9732	other
Hypodip-2M1 (testset)	other	0.00425	0.99575	other
Hypodip-C1	other	0.00037	0.99963	other
Hypodip-C2 (testset)	other	0.00381	0.99619	other
Hypodip-C3	other	0.00151	0.99849	other
Hypodip-C4	other	0.40578	0.59422	other
Hypodip-C5	other	0.01517	0.98483	other
Hypodip-C6 (testset)	other	0.64728	0.35272	T-ALL
MLL-1 (testset)	other	0.00157	0.99843	other
MLL-2	other	0.00158	0.99842	other
MLL-3 (testset)	other	0.05527	0.94473	other
MLL-4	other	0.02297	0.97703	other
MLL-5 (testset)	other	0.00147	0.99853	other
MLL-6 (testset)	other	0.05072	0.94928	other
MLL-7	other	0.00161	0.99839	other
MLL-8 (testset)	other	0.00804	0.99196	other
MLL-2M1	other	0.01091	0.98909	other
MLL-2M2 (testset)	other	0.02274	0.97726	other
MLL-C1	other	0.0043	0.9957	other
MLL-C2	other	0.23806	0.76194	other
MLL-C3 (testset)	other	0.02068	0.97932	other
MLL-C4	other	0.01804	0.98196	other
MLL-C5	other	0.32461	0.67539	other
MLL-C6	other	0.00938	0.99062	other
MLL-R1 (testset)	other	0.00082	0.99918	other
MLL-R2	other	0.01132	0.98868	other
MLL-R3	other	0.03005	0.96995	other
MLL-R4	other	0.00684	0.99316	other
Normal-1	other	1e-05	0.99999	other
Normal-2	other	0.22918	0.77082	other
Normal-3	other	0.00027	0.99973	other
Normal-C1-N	other	0.00562	0.99438	other
Normal-C10	other	0.00055	0.99945	other
Normal-C11-N (testset)	other	0.00028	0.99972	other
Normal-C12 (testset)	other	0.00011	0.99989	other
Normal-C2-N	other	0.00219	0.99781	other
Normal-C3-N	other	0.00027	0.99973	other
Normal-C4-N	other	7e-05	0.99993	other
Normal-C5	other	0.00954	0.99046	other
Normal-C6 (testset)	other	0.00021	0.99979	other
Normal-C7-N (testset)	other	0.00017	0.99983	other
Normal-C8	other	0.03408	0.96592	other
Normal-C9 (testset)	other	0.00572	0.99428	other
Normal-R1 (testset)	other	0.02726	0.97274	other
Normal-R2-N	other	0.01621	0.98379	other
Normal-R3	other	0.00387	0.99613	other
Pseudodip-1	other	0.00523	0.99477	other
Pseudodip-2	other	0.00303	0.99697	other
Pseudodip-3	other	0.00018	0.99982	other
Pseudodip-4 (testset)	other	0.02451	0.97549	other
Pseudodip-5 (testset)	other	0.00016	0.99984	other
Pseudodip-6 (testset)	other	0.00094	0.99906	other
Pseudodip-7	other	0.00115	0.99885	other
Pseudodip-8-N	other	0.00229	0.99771	other
Pseudodip-9	other	0.00448	0.99552	other
Pseudodip-C10 (testset)	other	0.01163	0.98837	other
Pseudodip-C11 (testset)	other	0.00074	0.99926	other
Pseudodip-C12 (testset)	other	0.00237	0.99763	other
Pseudodip-C13	other	0.00757	0.99243	other
Pseudodip-C14 (testset)	other	0.00074	0.99926	other
Pseudodip-C15	other	5e-05	0.99995	other
Pseudodip-C16-N (testset)	other	0.02474	0.97526	other
Pseudodip-C17	other	2e-05	0.99998	other
Pseudodip-C18	other	0.00086	0.99914	other
Pseudodip-C19	other	0.16908	0.83092	other
Pseudodip-C1	other	0.01435	0.98565	other
Pseudodip-C2-N	other	0.00024	0.99976	other
Pseudodip-C3	other	0.00068	0.99932	other
Pseudodip-C4	other	2e-05	0.99998	other
Pseudodip-C5 (testset)	other	0.00017	0.99983	other
Pseudodip-C6	other	0.01469	0.98531	other
Pseudodip-C7	other	0.00137	0.99863	other
Pseudodip-C8	other	0.08212	0.91788	other
Pseudodip-C9	other	0.00014	0.99986	other
Pseudodip-R1-N (testset)	other	0.00044	0.99956	other
T-ALL-10 (testset)	T-ALL	0.85624	0.14376	T-ALL
T-ALL-1 (testset)	T-ALL	0.99984	0.00016	T-ALL
T-ALL-2 (testset)	T-ALL	0.00749	0.99251	other
T-ALL-3	T-ALL	1	0	T-ALL
T-ALL-4 (testset)	T-ALL	0.99992	8e-05	T-ALL
T-ALL-5 (testset)	T-ALL	1	0	T-ALL
T-ALL-6	T-ALL	1	0	T-ALL
T-ALL-7 (testset)	T-ALL	0.99993	7e-05	T-ALL
T-ALL-8 (testset)	T-ALL	0.99877	0.00123	T-ALL
T-ALL-9	T-ALL	1	0	T-ALL
T-ALL-2M1	T-ALL	1	0	T-ALL
T-ALL-C10	T-ALL	1	0	T-ALL
T-ALL-C11	T-ALL	1	0	T-ALL
T-ALL-C12	T-ALL	1	0	T-ALL
T-ALL-C13	T-ALL	0.99986	0.00014	T-ALL
T-ALL-C14	T-ALL	0.23159	0.76841	other
T-ALL-C15 (testset)	T-ALL	1	0	T-ALL
T-ALL-C16 (testset)	T-ALL	0.01868	0.98132	other
T-ALL-C17	T-ALL	0.81376	0.18624	T-ALL
T-ALL-C18	T-ALL	0.99731	0.00269	T-ALL
T-ALL-C19	T-ALL	0.99862	0.00138	T-ALL
T-ALL-C1	T-ALL	0.90932	0.09068	T-ALL
T-ALL-C20	T-ALL	0.99476	0.00524	T-ALL
T-ALL-C21	T-ALL	0.99999	1e-05	T-ALL
T-ALL-C22 (testset)	T-ALL	0.99787	0.00213	T-ALL
T-ALL-C23	T-ALL	0.88222	0.11778	T-ALL
T-ALL-C24 (testset)	T-ALL	0.99892	0.00108	T-ALL
T-ALL-C25 (testset)	T-ALL	0.99999	1e-05	T-ALL
T-ALL-C26	T-ALL	0.70626	0.29374	T-ALL
T-ALL-C2	T-ALL	0.99893	0.00107	T-ALL
T-ALL-C3	T-ALL	0.99991	9e-05	T-ALL
T-ALL-C4	T-ALL	0.99616	0.00384	T-ALL
T-ALL-C5 (testset)	T-ALL	0.60613	0.39387	T-ALL
T-ALL-C6	T-ALL	0.99994	6e-05	T-ALL
T-ALL-C7 (testset)	T-ALL	0.99451	0.00549	T-ALL
T-ALL-C8	T-ALL	0.1229	0.8771	other
T-ALL-C9	T-ALL	0.99999	1e-05	T-ALL
T-ALL-R1	T-ALL	0.99867	0.00133	T-ALL
T-ALL-R2	T-ALL	1	0	T-ALL
T-ALL-R3	T-ALL	0.98841	0.01159	T-ALL
T-ALL-R4	T-ALL	0.99996	4e-05	T-ALL
T-ALL-R5	T-ALL	0.99985	0.00015	T-ALL
T-ALL-R6	T-ALL	0.98641	0.01359	T-ALL
TEL-AML1-10	other	0.04832	0.95168	other
TEL-AML1-11 (testset)	other	0.00042	0.99958	other
TEL-AML1-12	other	0.00079	0.99921	other
TEL-AML1-13 (testset)	other	9e-05	0.99991	other
TEL-AML1-14	other	0.01023	0.98977	other
TEL-AML1-1	other	0.00014	0.99986	other
TEL-AML1-2	other	0.00111	0.99889	other
TEL-AML1-3	other	0.00085	0.99915	other
TEL-AML1-4	other	0.00011	0.99989	other
TEL-AML1-5 (testset)	other	0.00022	0.99978	other
TEL-AML1-6	other	1e-04	0.9999	other
TEL-AML1-7	other	0.00026	0.99974	other
TEL-AML1-8 (testset)	other	0.00057	0.99943	other
TEL-AML1-9	other	0.00043	0.99957	other
TEL-AML1-2M1 (testset)	other	0.03468	0.96532	other
TEL-AML1-2M2	other	0.00018	0.99982	other
TEL-AML1-2M3	other	0.00069	0.99931	other
TEL-AML1-2M4 (testset)	other	0.00175	0.99825	other
TEL-AML1-2M5	other	0.00045	0.99955	other
TEL-AML1-C10	other	0.00036	0.99964	other
TEL-AML1-C11	other	0.01069	0.98931	other
TEL-AML1-C12	other	7e-05	0.99993	other
TEL-AML1-C13	other	0.00015	0.99985	other
TEL-AML1-C14 (testset)	other	0.00063	0.99937	other
TEL-AML1-C15	other	0.00306	0.99694	other
TEL-AML1-C16	other	0.00024	0.99976	other
TEL-AML1-C17	other	1e-04	0.9999	other
TEL-AML1-C18	other	0.00027	0.99973	other
TEL-AML1-C19 (testset)	other	0.00019	0.99981	other
TEL-AML1-C1 (testset)	other	0.00085	0.99915	other
TEL-AML1-C20 (testset)	other	0.00021	0.99979	other
TEL-AML1-C21	other	0.00064	0.99936	other
TEL-AML1-C22	other	0.00082	0.99918	other
TEL-AML1-C23 (testset)	other	0.00013	0.99987	other
TEL-AML1-C24	other	0.00321	0.99679	other
TEL-AML1-C25	other	0.00053	0.99947	other
TEL-AML1-C26 (testset)	other	0.01806	0.98194	other
TEL-AML1-C27	other	0.00033	0.99967	other
TEL-AML1-C28 (testset)	other	0.00102	0.99898	other
TEL-AML1-C29	other	0.00164	0.99836	other
TEL-AML1-C2	other	0.00127	0.99873	other
TEL-AML1-C30	other	0.00953	0.99047	other
TEL-AML1-C31 (testset)	other	0.00011	0.99989	other
TEL-AML1-C32	other	3e-04	0.9997	other
TEL-AML1-C33 (testset)	other	0.00014	0.99986	other
TEL-AML1-C34	other	0.00079	0.99921	other
TEL-AML1-C35	other	0.00302	0.99698	other
TEL-AML1-C36 (testset)	other	0.00124	0.99876	other
TEL-AML1-C37	other	0.00109	0.99891	other
TEL-AML1-C38	other	9e-05	0.99991	other
TEL-AML1-C39	other	3e-05	0.99997	other
TEL-AML1-C3	other	0.00146	0.99854	other
TEL-AML1-C40	other	0.0011	0.9989	other
TEL-AML1-C41	other	0.00149	0.99851	other
TEL-AML1-C42	other	0.00017	0.99983	other
TEL-AML1-C43	other	0.00024	0.99976	other
TEL-AML1-C44	other	0.00015	0.99985	other
TEL-AML1-C45	other	0.00066	0.99934	other
TEL-AML1-C46	other	0.02402	0.97598	other
TEL-AML1-C47	other	0.00044	0.99956	other
TEL-AML1-C48	other	0.43698	0.56302	other
TEL-AML1-C49 (testset)	other	1e-04	0.9999	other
TEL-AML1-C4 (testset)	other	0.00042	0.99958	other
TEL-AML1-C50	other	0.00041	0.99959	other
TEL-AML1-C51 (testset)	other	0.00062	0.99938	other
TEL-AML1-C52	other	0.0051	0.9949	other
TEL-AML1-C53 (testset)	other	0.39232	0.60768	other
TEL-AML1-C54	other	6e-04	0.9994	other
TEL-AML1-C55 (testset)	other	0.00971	0.99029	other
TEL-AML1-C56	other	0.00064	0.99936	other
TEL-AML1-C57	other	0.00398	0.99602	other
TEL-AML1-C5 (testset)	other	0.00066	0.99934	other
TEL-AML1-C6	other	0.00167	0.99833	other
TEL-AML1-C7	other	0.00118	0.99882	other
TEL-AML1-C8	other	3e-05	0.99997	other
TEL-AML1-C9	other	6e-04	0.9994	other
TEL-AML1-R1 (testset)	other	8e-04	0.9992	other
TEL-AML1-R2 (testset)	other	0.00363	0.99637	other
TEL-AML1-R3	other	0.00022	0.99978	other