GO:0006355

GO:0006355

regulation of transcription, DNA-dependent (annotated genes)

Biological Process

Parent node

GO:0006355	regulation of transcription, DNA-dependent

This leaf node contains 1136 genes

The following 10 of these are used in classification:

	Symbol	Genename	T-ALL score	other score
32649_at	TCF7	transcription factor 7 (T-cell specific, HMG-box)	2.3037	-0.3535
38750_at	NOTCH3	Notch homolog 3 (Drosophila)	0.9283	-0.1424
633_s_at	TFDP2	transcription factor Dp-2 (E2F dimerization partner 2)	0.5573	-0.0855
40511_at	GATA3	GATA binding protein 3	0.5117	-0.0785
36239_at	POU2AF1	POU domain, class 2, associating factor 1	-0.2794	0.0429
37711_at	MEF2C	MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C)	-0.217	0.0333
37712_g_at	MEF2C	MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C)	-0.1868	0.0287
37710_at	MEF2C	MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C)	-0.083	0.0127
39839_at	CSDA	cold shock domain protein A	-0.075	0.0115
39358_at	NCOR2	nuclear receptor co-repressor 2	0.0661	-0.0101

Performance on training data

• Error rate: 0.00459
• Performance: 0.02205
• Redundancy: 5.59085

	Sensitivity	Specificity
T-ALL	0.96552	1
other	1	0.96552

Performance on test data

• Error rate: 0.04587
• Performance: 0.30271
• Redundancy: 5.40739

	Sensitivity	Specificity
T-ALL	0.78571	0.97895
other	0.97895	0.78571

Predictions

	Class	T-ALL	other	Predictionn
BCR-ABL-1	other	0.00015	0.99985	other
BCR-ABL-2	other	0.0015	0.9985	other
BCR-ABL-3 (testset)	other	3e-05	0.99997	other
BCR-ABL-4	other	0.00053	0.99947	other
BCR-ABL-5	other	0.001	0.999	other
BCR-ABL-6 (testset)	other	0.17931	0.82069	other
BCR-ABL-7 (testset)	other	0.0064	0.9936	other
BCR-ABL-8 (testset)	other	5e-05	0.99995	other
BCR-ABL-9 (testset)	other	0.00018	0.99982	other
BCR-ABL-C1 (testset)	other	0.00728	0.99272	other
BCR-ABL-Hyperdip-10 (testset)	other	7e-05	0.99993	other
BCR-ABL-Hyperdip-R5	other	0.00011	0.99989	other
BCR-ABL-R1	other	0.00303	0.99697	other
BCR-ABL-R2	other	0.00977	0.99023	other
BCR-ABL-R3 (testset)	other	0.02646	0.97354	other
E2A-PBX1-10	other	0.00028	0.99972	other
E2A-PBX1-11	other	3e-04	0.9997	other
E2A-PBX1-12 (testset)	other	0.00017	0.99983	other
E2A-PBX1-13	other	0.00042	0.99958	other
E2A-PBX1-1	other	1e-04	0.9999	other
E2A-PBX1-2	other	0.00038	0.99962	other
E2A-PBX1-3	other	0.00011	0.99989	other
E2A-PBX1-4 (testset)	other	0.00072	0.99928	other
E2A-PBX1-5	other	0.00013	0.99987	other
E2A-PBX1-6	other	0.00011	0.99989	other
E2A-PBX1-7	other	0.00041	0.99959	other
E2A-PBX1-8	other	2e-04	0.9998	other
E2A-PBX1-9	other	0.00059	0.99941	other
E2A-PBX1-2M1	other	3e-05	0.99997	other
E2A-PBX1-C10	other	0.00171	0.99829	other
E2A-PBX1-C11	other	4e-04	0.9996	other
E2A-PBX1-C12	other	0.00072	0.99928	other
E2A-PBX1-C1	other	0.00316	0.99684	other
E2A-PBX1-C2	other	0.00049	0.99951	other
E2A-PBX1-C3 (testset)	other	0.00017	0.99983	other
E2A-PBX1-C4	other	0.00041	0.99959	other
E2A-PBX1-C5 (testset)	other	2e-04	0.9998	other
E2A-PBX1-C6	other	0.00034	0.99966	other
E2A-PBX1-C7	other	0.00028	0.99972	other
E2A-PBX1-C8	other	0.23846	0.76154	other
E2A-PBX1-C9	other	0.00033	0.99967	other
E2A-PBX1-R1	other	7e-05	0.99993	other
Hyperdip-50-10	other	0.00201	0.99799	other
Hyperdip-50-11 (testset)	other	0.02659	0.97341	other
Hyperdip-50-12	other	2e-04	0.9998	other
Hyperdip-50-13 (testset)	other	0.00076	0.99924	other
Hyperdip-50-14	other	3e-05	0.99997	other
Hyperdip-50-1	other	4e-04	0.9996	other
Hyperdip-50-2	other	0.00041	0.99959	other
Hyperdip-50-3 (testset)	other	4e-05	0.99996	other
Hyperdip-50-4 (testset)	other	0.56389	0.43611	T-ALL
Hyperdip-50-5 (testset)	other	5e-05	0.99995	other
Hyperdip-50-6	other	0.00053	0.99947	other
Hyperdip-50-7	other	0.00026	0.99974	other
Hyperdip-50-8 (testset)	other	1e-04	0.9999	other
Hyperdip-50-9	other	0.00022	0.99978	other
Hyperdip-50-2M1	other	0.00371	0.99629	other
Hyperdip-50-2M2 (testset)	other	0.00014	0.99986	other
Hyperdip-50-C10	other	0.00078	0.99922	other
Hyperdip-50-C11 (testset)	other	0.00012	0.99988	other
Hyperdip-50-C12	other	0.00077	0.99923	other
Hyperdip-50-C13	other	0.00034	0.99966	other
Hyperdip-50-C14	other	0.00056	0.99944	other
Hyperdip-50-C15	other	9e-05	0.99991	other
Hyperdip-50-C16	other	4e-04	0.9996	other
Hyperdip-50-C17	other	0.00027	0.99973	other
Hyperdip-50-C18	other	8e-05	0.99992	other
Hyperdip-50-C19 (testset)	other	0.00227	0.99773	other
Hyperdip-50-C1	other	0.00038	0.99962	other
Hyperdip-50-C20	other	0.00689	0.99311	other
Hyperdip-50-C21	other	0.00037	0.99963	other
Hyperdip-50-C22 (testset)	other	0.00021	0.99979	other
Hyperdip-50-C23	other	9e-05	0.99991	other
Hyperdip-50-C24	other	4e-04	0.9996	other
Hyperdip-50-C25	other	0.00024	0.99976	other
Hyperdip-50-C26	other	3e-04	0.9997	other
Hyperdip-50-C27-N	other	0.00101	0.99899	other
Hyperdip-50-C28	other	0.00054	0.99946	other
Hyperdip-50-C29 (testset)	other	0.00166	0.99834	other
Hyperdip-50-C2 (testset)	other	0.00159	0.99841	other
Hyperdip-50-C30	other	7e-05	0.99993	other
Hyperdip-50-C31	other	8e-05	0.99992	other
Hyperdip-50-C32	other	6e-05	0.99994	other
Hyperdip-50-C33	other	9e-05	0.99991	other
Hyperdip-50-C34	other	0.00159	0.99841	other
Hyperdip-50-C35 (testset)	other	0.00047	0.99953	other
Hyperdip-50-C36	other	0.00047	0.99953	other
Hyperdip-50-C37	other	0.00043	0.99957	other
Hyperdip-50-C38	other	0.00203	0.99797	other
Hyperdip-50-C39 (testset)	other	5e-04	0.9995	other
Hyperdip-50-C3	other	0.00077	0.99923	other
Hyperdip-50-C40	other	0.00023	0.99977	other
Hyperdip-50-C41 (testset)	other	0.00018	0.99982	other
Hyperdip-50-C42 (testset)	other	0.0016	0.9984	other
Hyperdip-50-C43	other	0.00131	0.99869	other
Hyperdip-50-C4	other	0.00013	0.99987	other
Hyperdip-50-C5 (testset)	other	0.01473	0.98527	other
Hyperdip-50-C6	other	0.00078	0.99922	other
Hyperdip-50-C7 (testset)	other	0.00048	0.99952	other
Hyperdip-50-C8 (testset)	other	4e-05	0.99996	other
Hyperdip-50-C9	other	5e-05	0.99995	other
Hyperdip-50-R1	other	0.00887	0.99113	other
Hyperdip-50-R2 (testset)	other	0.00072	0.99928	other
Hyperdip-50-R3	other	0.00036	0.99964	other
Hyperdip-50-R4	other	0.00045	0.99955	other
Hyperdip-50-R5 (testset)	other	0.00076	0.99924	other
Hyperdip47-50-1	other	0.00013	0.99987	other
Hyperdip47-50-2	other	0.00031	0.99969	other
Hyperdip47-50-3 (testset)	other	0.0113	0.9887	other
Hyperdip47-50-2M1 (testset)	other	0.00017	0.99983	other
Hyperdip47-50-C10 (testset)	other	0.00062	0.99938	other
Hyperdip47-50-C11	other	0.00037	0.99963	other
Hyperdip47-50-C12	other	0.09127	0.90873	other
Hyperdip47-50-C13	other	0.0014	0.9986	other
Hyperdip47-50-C14-N (testset)	other	0.00019	0.99981	other
Hyperdip47-50-C15 (testset)	other	0.00013	0.99987	other
Hyperdip47-50-C16	other	0.00066	0.99934	other
Hyperdip47-50-C17	other	0.00014	0.99986	other
Hyperdip47-50-C18	other	8e-05	0.99992	other
Hyperdip47-50-C19	other	0.04841	0.95159	other
Hyperdip47-50-C1 (testset)	other	0.00024	0.99976	other
Hyperdip47-50-C2 (testset)	other	0.00964	0.99036	other
Hyperdip47-50-C3-N (testset)	other	0.00072	0.99928	other
Hyperdip47-50-C4	other	0.00066	0.99934	other
Hyperdip47-50-C5 (testset)	other	0.00074	0.99926	other
Hyperdip47-50-C6 (testset)	other	0.00084	0.99916	other
Hyperdip47-50-C7	other	0.00111	0.99889	other
Hyperdip47-50-C8	other	0.00053	0.99947	other
Hyperdip47-50-C9	other	0.00043	0.99957	other
Hypodip-1 (testset)	other	0.00059	0.99941	other
Hypodip-2	other	0.03571	0.96429	other
Hypodip-2M1 (testset)	other	0.02947	0.97053	other
Hypodip-C1	other	0.0089	0.9911	other
Hypodip-C2 (testset)	other	0.00039	0.99961	other
Hypodip-C3	other	0.00523	0.99477	other
Hypodip-C4	other	0.00024	0.99976	other
Hypodip-C5	other	0.00013	0.99987	other
Hypodip-C6 (testset)	other	0.00027	0.99973	other
MLL-1 (testset)	other	0.00152	0.99848	other
MLL-2	other	0.00045	0.99955	other
MLL-3 (testset)	other	0.00015	0.99985	other
MLL-4	other	4e-05	0.99996	other
MLL-5 (testset)	other	0.00015	0.99985	other
MLL-6 (testset)	other	0.00019	0.99981	other
MLL-7	other	5e-05	0.99995	other
MLL-8 (testset)	other	0.00015	0.99985	other
MLL-2M1	other	0.00034	0.99966	other
MLL-2M2 (testset)	other	1e-04	0.9999	other
MLL-C1	other	1e-04	0.9999	other
MLL-C2	other	0.00011	0.99989	other
MLL-C3 (testset)	other	0.00469	0.99531	other
MLL-C4	other	0.00031	0.99969	other
MLL-C5	other	0.00614	0.99386	other
MLL-C6	other	0.00098	0.99902	other
MLL-R1 (testset)	other	0.00256	0.99744	other
MLL-R2	other	7e-05	0.99993	other
MLL-R3	other	8e-05	0.99992	other
MLL-R4	other	0.00028	0.99972	other
Normal-1	other	4e-04	0.9996	other
Normal-2	other	0.00122	0.99878	other
Normal-3	other	0.00059	0.99941	other
Normal-C1-N	other	0.00135	0.99865	other
Normal-C10	other	0.00021	0.99979	other
Normal-C11-N (testset)	other	0.00195	0.99805	other
Normal-C12 (testset)	other	0.00037	0.99963	other
Normal-C2-N	other	0.00065	0.99935	other
Normal-C3-N	other	0.00038	0.99962	other
Normal-C4-N	other	0.00055	0.99945	other
Normal-C5	other	0.01009	0.98991	other
Normal-C6 (testset)	other	0.00051	0.99949	other
Normal-C7-N (testset)	other	8e-04	0.9992	other
Normal-C8	other	0.00114	0.99886	other
Normal-C9 (testset)	other	0.01075	0.98925	other
Normal-R1 (testset)	other	0.00094	0.99906	other
Normal-R2-N	other	0.00193	0.99807	other
Normal-R3	other	0.0018	0.9982	other
Pseudodip-1	other	0.00023	0.99977	other
Pseudodip-2	other	0.04463	0.95537	other
Pseudodip-3	other	0.00024	0.99976	other
Pseudodip-4 (testset)	other	0.00696	0.99304	other
Pseudodip-5 (testset)	other	0.00031	0.99969	other
Pseudodip-6 (testset)	other	3e-05	0.99997	other
Pseudodip-7	other	0.00405	0.99595	other
Pseudodip-8-N	other	0.00084	0.99916	other
Pseudodip-9	other	0.00331	0.99669	other
Pseudodip-C10 (testset)	other	0.02926	0.97074	other
Pseudodip-C11 (testset)	other	0.90404	0.09596	T-ALL
Pseudodip-C12 (testset)	other	0.01761	0.98239	other
Pseudodip-C13	other	0.00028	0.99972	other
Pseudodip-C14 (testset)	other	0.02018	0.97982	other
Pseudodip-C15	other	0.00307	0.99693	other
Pseudodip-C16-N (testset)	other	0.00763	0.99237	other
Pseudodip-C17	other	4e-05	0.99996	other
Pseudodip-C18	other	7e-04	0.9993	other
Pseudodip-C19	other	0.00065	0.99935	other
Pseudodip-C1	other	0.00372	0.99628	other
Pseudodip-C2-N	other	4e-04	0.9996	other
Pseudodip-C3	other	0.00014	0.99986	other
Pseudodip-C4	other	0.00119	0.99881	other
Pseudodip-C5 (testset)	other	0.00027	0.99973	other
Pseudodip-C6	other	0.00116	0.99884	other
Pseudodip-C7	other	0.00026	0.99974	other
Pseudodip-C8	other	0.00099	0.99901	other
Pseudodip-C9	other	0.00045	0.99955	other
Pseudodip-R1-N (testset)	other	0.00025	0.99975	other
T-ALL-10 (testset)	T-ALL	0.9998	2e-04	T-ALL
T-ALL-1 (testset)	T-ALL	1	0	T-ALL
T-ALL-2 (testset)	T-ALL	0.00655	0.99345	other
T-ALL-3	T-ALL	1	0	T-ALL
T-ALL-4 (testset)	T-ALL	1	0	T-ALL
T-ALL-5 (testset)	T-ALL	0.99997	3e-05	T-ALL
T-ALL-6	T-ALL	1	0	T-ALL
T-ALL-7 (testset)	T-ALL	1	0	T-ALL
T-ALL-8 (testset)	T-ALL	1	0	T-ALL
T-ALL-9	T-ALL	0.99715	0.00285	T-ALL
T-ALL-2M1	T-ALL	0.99998	2e-05	T-ALL
T-ALL-C10	T-ALL	1	0	T-ALL
T-ALL-C11	T-ALL	1	0	T-ALL
T-ALL-C12	T-ALL	0.99972	0.00028	T-ALL
T-ALL-C13	T-ALL	0.9999	1e-04	T-ALL
T-ALL-C14	T-ALL	0.86128	0.13872	T-ALL
T-ALL-C15 (testset)	T-ALL	0.99996	4e-05	T-ALL
T-ALL-C16 (testset)	T-ALL	0.43138	0.56862	other
T-ALL-C17	T-ALL	0.94304	0.05696	T-ALL
T-ALL-C18	T-ALL	0.82781	0.17219	T-ALL
T-ALL-C19	T-ALL	0.99965	0.00035	T-ALL
T-ALL-C1	T-ALL	0.98007	0.01993	T-ALL
T-ALL-C20	T-ALL	1	0	T-ALL
T-ALL-C21	T-ALL	0.99999	1e-05	T-ALL
T-ALL-C22 (testset)	T-ALL	0.99996	4e-05	T-ALL
T-ALL-C23	T-ALL	0.99893	0.00107	T-ALL
T-ALL-C24 (testset)	T-ALL	0.99385	0.00615	T-ALL
T-ALL-C25 (testset)	T-ALL	0.99999	1e-05	T-ALL
T-ALL-C26	T-ALL	0.99912	0.00088	T-ALL
T-ALL-C2	T-ALL	0.99994	6e-05	T-ALL
T-ALL-C3	T-ALL	1	0	T-ALL
T-ALL-C4	T-ALL	0.99998	2e-05	T-ALL
T-ALL-C5 (testset)	T-ALL	0.00223	0.99777	other
T-ALL-C6	T-ALL	0.99993	7e-05	T-ALL
T-ALL-C7 (testset)	T-ALL	0.99999	1e-05	T-ALL
T-ALL-C8	T-ALL	0.9855	0.0145	T-ALL
T-ALL-C9	T-ALL	0.9998	2e-04	T-ALL
T-ALL-R1	T-ALL	0.99993	7e-05	T-ALL
T-ALL-R2	T-ALL	0.99994	6e-05	T-ALL
T-ALL-R3	T-ALL	0.9933	0.0067	T-ALL
T-ALL-R4	T-ALL	0.99993	7e-05	T-ALL
T-ALL-R5	T-ALL	0.3713	0.6287	other
T-ALL-R6	T-ALL	0.97125	0.02875	T-ALL
TEL-AML1-10	other	0.00065	0.99935	other
TEL-AML1-11 (testset)	other	0.00017	0.99983	other
TEL-AML1-12	other	0.00629	0.99371	other
TEL-AML1-13 (testset)	other	0.00353	0.99647	other
TEL-AML1-14	other	0.00019	0.99981	other
TEL-AML1-1	other	0.00101	0.99899	other
TEL-AML1-2	other	0.00184	0.99816	other
TEL-AML1-3	other	0.00226	0.99774	other
TEL-AML1-4	other	0.00011	0.99989	other
TEL-AML1-5 (testset)	other	0.00041	0.99959	other
TEL-AML1-6	other	0.00036	0.99964	other
TEL-AML1-7	other	0.00013	0.99987	other
TEL-AML1-8 (testset)	other	9e-05	0.99991	other
TEL-AML1-9	other	0.00017	0.99983	other
TEL-AML1-2M1 (testset)	other	9e-05	0.99991	other
TEL-AML1-2M2	other	0.00023	0.99977	other
TEL-AML1-2M3	other	0.00015	0.99985	other
TEL-AML1-2M4 (testset)	other	0.0109	0.9891	other
TEL-AML1-2M5	other	4e-04	0.9996	other
TEL-AML1-C10	other	0.00147	0.99853	other
TEL-AML1-C11	other	0.001	0.999	other
TEL-AML1-C12	other	0.00122	0.99878	other
TEL-AML1-C13	other	0.00011	0.99989	other
TEL-AML1-C14 (testset)	other	0.00038	0.99962	other
TEL-AML1-C15	other	0.00029	0.99971	other
TEL-AML1-C16	other	0.00093	0.99907	other
TEL-AML1-C17	other	0.00236	0.99764	other
TEL-AML1-C18	other	0.00018	0.99982	other
TEL-AML1-C19 (testset)	other	0.00033	0.99967	other
TEL-AML1-C1 (testset)	other	0.00099	0.99901	other
TEL-AML1-C20 (testset)	other	0.00048	0.99952	other
TEL-AML1-C21	other	0.00068	0.99932	other
TEL-AML1-C22	other	0.18474	0.81526	other
TEL-AML1-C23 (testset)	other	0.0034	0.9966	other
TEL-AML1-C24	other	0.00017	0.99983	other
TEL-AML1-C25	other	0.00038	0.99962	other
TEL-AML1-C26 (testset)	other	0.00021	0.99979	other
TEL-AML1-C27	other	0.00055	0.99945	other
TEL-AML1-C28 (testset)	other	0.00038	0.99962	other
TEL-AML1-C29	other	0.00101	0.99899	other
TEL-AML1-C2	other	0.01172	0.98828	other
TEL-AML1-C30	other	0.00063	0.99937	other
TEL-AML1-C31 (testset)	other	5e-05	0.99995	other
TEL-AML1-C32	other	0.00029	0.99971	other
TEL-AML1-C33 (testset)	other	3e-05	0.99997	other
TEL-AML1-C34	other	0.00018	0.99982	other
TEL-AML1-C35	other	0.00322	0.99678	other
TEL-AML1-C36 (testset)	other	0.00147	0.99853	other
TEL-AML1-C37	other	3e-04	0.9997	other
TEL-AML1-C38	other	6e-05	0.99994	other
TEL-AML1-C39	other	0.00089	0.99911	other
TEL-AML1-C3	other	0.00055	0.99945	other
TEL-AML1-C40	other	0.00131	0.99869	other
TEL-AML1-C41	other	0.00097	0.99903	other
TEL-AML1-C42	other	0.00161	0.99839	other
TEL-AML1-C43	other	0.00037	0.99963	other
TEL-AML1-C44	other	0.01472	0.98528	other
TEL-AML1-C45	other	0.00051	0.99949	other
TEL-AML1-C46	other	0.00406	0.99594	other
TEL-AML1-C47	other	8e-05	0.99992	other
TEL-AML1-C48	other	0.00478	0.99522	other
TEL-AML1-C49 (testset)	other	0.00024	0.99976	other
TEL-AML1-C4 (testset)	other	0.00055	0.99945	other
TEL-AML1-C50	other	0.00094	0.99906	other
TEL-AML1-C51 (testset)	other	0.00081	0.99919	other
TEL-AML1-C52	other	0.0025	0.9975	other
TEL-AML1-C53 (testset)	other	0.32858	0.67142	other
TEL-AML1-C54	other	8e-05	0.99992	other
TEL-AML1-C55 (testset)	other	0.04215	0.95785	other
TEL-AML1-C56	other	0.00916	0.99084	other
TEL-AML1-C57	other	0.00029	0.99971	other
TEL-AML1-C5 (testset)	other	0.0013	0.9987	other
TEL-AML1-C6	other	0.00017	0.99983	other
TEL-AML1-C7	other	0.00465	0.99535	other
TEL-AML1-C8	other	0.00099	0.99901	other
TEL-AML1-C9	other	0.00684	0.99316	other
TEL-AML1-R1 (testset)	other	0.00157	0.99843	other
TEL-AML1-R2 (testset)	other	0.00806	0.99194	other
TEL-AML1-R3	other	0.00088	0.99912	other