GO:0006355


GO:0006355

regulation of transcription, DNA-dependent
(annotated genes)

Biological
Process

Parent node

This leaf node contains 1136 genes

The following 10 of these are used in classification:

 SymbolGenenameT-ALL scoreother score
32649_atTCF7 transcription factor 7 (T-cell specific, HMG-box)2.3037-0.3535
38750_atNOTCH3 Notch homolog 3 (Drosophila)0.9283-0.1424
633_s_atTFDP2 transcription factor Dp-2 (E2F dimerization partner 2)0.5573-0.0855
40511_atGATA3 GATA binding protein 30.5117-0.0785
36239_atPOU2AF1 POU domain, class 2, associating factor 1-0.27940.0429
37711_atMEF2C MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C)-0.2170.0333
37712_g_atMEF2C MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C)-0.18680.0287
37710_atMEF2C MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C)-0.0830.0127
39839_atCSDA cold shock domain protein A-0.0750.0115
39358_atNCOR2 nuclear receptor co-repressor 20.0661-0.0101

Performance on training data

 SensitivitySpecificity
T-ALL0.965521
other10.96552

Performance on test data

 SensitivitySpecificity
T-ALL0.785710.97895
other0.978950.78571

Predictions

 ClassT-ALLotherPredictionn
BCR-ABL-1other0.000150.99985 other
BCR-ABL-2other0.00150.9985 other
BCR-ABL-3 (testset)other3e-050.99997 other
BCR-ABL-4other0.000530.99947 other
BCR-ABL-5other0.0010.999 other
BCR-ABL-6 (testset)other0.179310.82069 other
BCR-ABL-7 (testset)other0.00640.9936 other
BCR-ABL-8 (testset)other5e-050.99995 other
BCR-ABL-9 (testset)other0.000180.99982 other
BCR-ABL-C1 (testset)other0.007280.99272 other
BCR-ABL-Hyperdip-10 (testset)other7e-050.99993 other
BCR-ABL-Hyperdip-R5other0.000110.99989 other
BCR-ABL-R1other0.003030.99697 other
BCR-ABL-R2other0.009770.99023 other
BCR-ABL-R3 (testset)other0.026460.97354 other
E2A-PBX1-10other0.000280.99972 other
E2A-PBX1-11other3e-040.9997 other
E2A-PBX1-12 (testset)other0.000170.99983 other
E2A-PBX1-13other0.000420.99958 other
E2A-PBX1-1other1e-040.9999 other
E2A-PBX1-2other0.000380.99962 other
E2A-PBX1-3other0.000110.99989 other
E2A-PBX1-4 (testset)other0.000720.99928 other
E2A-PBX1-5other0.000130.99987 other
E2A-PBX1-6other0.000110.99989 other
E2A-PBX1-7other0.000410.99959 other
E2A-PBX1-8other2e-040.9998 other
E2A-PBX1-9other0.000590.99941 other
E2A-PBX1-2M1other3e-050.99997 other
E2A-PBX1-C10other0.001710.99829 other
E2A-PBX1-C11other4e-040.9996 other
E2A-PBX1-C12other0.000720.99928 other
E2A-PBX1-C1other0.003160.99684 other
E2A-PBX1-C2other0.000490.99951 other
E2A-PBX1-C3 (testset)other0.000170.99983 other
E2A-PBX1-C4other0.000410.99959 other
E2A-PBX1-C5 (testset)other2e-040.9998 other
E2A-PBX1-C6other0.000340.99966 other
E2A-PBX1-C7other0.000280.99972 other
E2A-PBX1-C8other0.238460.76154 other
E2A-PBX1-C9other0.000330.99967 other
E2A-PBX1-R1other7e-050.99993 other
Hyperdip-50-10other0.002010.99799 other
Hyperdip-50-11 (testset)other0.026590.97341 other
Hyperdip-50-12other2e-040.9998 other
Hyperdip-50-13 (testset)other0.000760.99924 other
Hyperdip-50-14other3e-050.99997 other
Hyperdip-50-1other4e-040.9996 other
Hyperdip-50-2other0.000410.99959 other
Hyperdip-50-3 (testset)other4e-050.99996 other
Hyperdip-50-4 (testset)other0.563890.43611 T-ALL
Hyperdip-50-5 (testset)other5e-050.99995 other
Hyperdip-50-6other0.000530.99947 other
Hyperdip-50-7other0.000260.99974 other
Hyperdip-50-8 (testset)other1e-040.9999 other
Hyperdip-50-9other0.000220.99978 other
Hyperdip-50-2M1other0.003710.99629 other
Hyperdip-50-2M2 (testset)other0.000140.99986 other
Hyperdip-50-C10other0.000780.99922 other
Hyperdip-50-C11 (testset)other0.000120.99988 other
Hyperdip-50-C12other0.000770.99923 other
Hyperdip-50-C13other0.000340.99966 other
Hyperdip-50-C14other0.000560.99944 other
Hyperdip-50-C15other9e-050.99991 other
Hyperdip-50-C16other4e-040.9996 other
Hyperdip-50-C17other0.000270.99973 other
Hyperdip-50-C18other8e-050.99992 other
Hyperdip-50-C19 (testset)other0.002270.99773 other
Hyperdip-50-C1other0.000380.99962 other
Hyperdip-50-C20other0.006890.99311 other
Hyperdip-50-C21other0.000370.99963 other
Hyperdip-50-C22 (testset)other0.000210.99979 other
Hyperdip-50-C23other9e-050.99991 other
Hyperdip-50-C24other4e-040.9996 other
Hyperdip-50-C25other0.000240.99976 other
Hyperdip-50-C26other3e-040.9997 other
Hyperdip-50-C27-Nother0.001010.99899 other
Hyperdip-50-C28other0.000540.99946 other
Hyperdip-50-C29 (testset)other0.001660.99834 other
Hyperdip-50-C2 (testset)other0.001590.99841 other
Hyperdip-50-C30other7e-050.99993 other
Hyperdip-50-C31other8e-050.99992 other
Hyperdip-50-C32other6e-050.99994 other
Hyperdip-50-C33other9e-050.99991 other
Hyperdip-50-C34other0.001590.99841 other
Hyperdip-50-C35 (testset)other0.000470.99953 other
Hyperdip-50-C36other0.000470.99953 other
Hyperdip-50-C37other0.000430.99957 other
Hyperdip-50-C38other0.002030.99797 other
Hyperdip-50-C39 (testset)other5e-040.9995 other
Hyperdip-50-C3other0.000770.99923 other
Hyperdip-50-C40other0.000230.99977 other
Hyperdip-50-C41 (testset)other0.000180.99982 other
Hyperdip-50-C42 (testset)other0.00160.9984 other
Hyperdip-50-C43other0.001310.99869 other
Hyperdip-50-C4other0.000130.99987 other
Hyperdip-50-C5 (testset)other0.014730.98527 other
Hyperdip-50-C6other0.000780.99922 other
Hyperdip-50-C7 (testset)other0.000480.99952 other
Hyperdip-50-C8 (testset)other4e-050.99996 other
Hyperdip-50-C9other5e-050.99995 other
Hyperdip-50-R1other0.008870.99113 other
Hyperdip-50-R2 (testset)other0.000720.99928 other
Hyperdip-50-R3other0.000360.99964 other
Hyperdip-50-R4other0.000450.99955 other
Hyperdip-50-R5 (testset)other0.000760.99924 other
Hyperdip47-50-1other0.000130.99987 other
Hyperdip47-50-2other0.000310.99969 other
Hyperdip47-50-3 (testset)other0.01130.9887 other
Hyperdip47-50-2M1 (testset)other0.000170.99983 other
Hyperdip47-50-C10 (testset)other0.000620.99938 other
Hyperdip47-50-C11other0.000370.99963 other
Hyperdip47-50-C12other0.091270.90873 other
Hyperdip47-50-C13other0.00140.9986 other
Hyperdip47-50-C14-N (testset)other0.000190.99981 other
Hyperdip47-50-C15 (testset)other0.000130.99987 other
Hyperdip47-50-C16other0.000660.99934 other
Hyperdip47-50-C17other0.000140.99986 other
Hyperdip47-50-C18other8e-050.99992 other
Hyperdip47-50-C19other0.048410.95159 other
Hyperdip47-50-C1 (testset)other0.000240.99976 other
Hyperdip47-50-C2 (testset)other0.009640.99036 other
Hyperdip47-50-C3-N (testset)other0.000720.99928 other
Hyperdip47-50-C4other0.000660.99934 other
Hyperdip47-50-C5 (testset)other0.000740.99926 other
Hyperdip47-50-C6 (testset)other0.000840.99916 other
Hyperdip47-50-C7other0.001110.99889 other
Hyperdip47-50-C8other0.000530.99947 other
Hyperdip47-50-C9other0.000430.99957 other
Hypodip-1 (testset)other0.000590.99941 other
Hypodip-2other0.035710.96429 other
Hypodip-2M1 (testset)other0.029470.97053 other
Hypodip-C1other0.00890.9911 other
Hypodip-C2 (testset)other0.000390.99961 other
Hypodip-C3other0.005230.99477 other
Hypodip-C4other0.000240.99976 other
Hypodip-C5other0.000130.99987 other
Hypodip-C6 (testset)other0.000270.99973 other
MLL-1 (testset)other0.001520.99848 other
MLL-2other0.000450.99955 other
MLL-3 (testset)other0.000150.99985 other
MLL-4other4e-050.99996 other
MLL-5 (testset)other0.000150.99985 other
MLL-6 (testset)other0.000190.99981 other
MLL-7other5e-050.99995 other
MLL-8 (testset)other0.000150.99985 other
MLL-2M1other0.000340.99966 other
MLL-2M2 (testset)other1e-040.9999 other
MLL-C1other1e-040.9999 other
MLL-C2other0.000110.99989 other
MLL-C3 (testset)other0.004690.99531 other
MLL-C4other0.000310.99969 other
MLL-C5other0.006140.99386 other
MLL-C6other0.000980.99902 other
MLL-R1 (testset)other0.002560.99744 other
MLL-R2other7e-050.99993 other
MLL-R3other8e-050.99992 other
MLL-R4other0.000280.99972 other
Normal-1other4e-040.9996 other
Normal-2other0.001220.99878 other
Normal-3other0.000590.99941 other
Normal-C1-Nother0.001350.99865 other
Normal-C10other0.000210.99979 other
Normal-C11-N (testset)other0.001950.99805 other
Normal-C12 (testset)other0.000370.99963 other
Normal-C2-Nother0.000650.99935 other
Normal-C3-Nother0.000380.99962 other
Normal-C4-Nother0.000550.99945 other
Normal-C5other0.010090.98991 other
Normal-C6 (testset)other0.000510.99949 other
Normal-C7-N (testset)other8e-040.9992 other
Normal-C8other0.001140.99886 other
Normal-C9 (testset)other0.010750.98925 other
Normal-R1 (testset)other0.000940.99906 other
Normal-R2-Nother0.001930.99807 other
Normal-R3other0.00180.9982 other
Pseudodip-1other0.000230.99977 other
Pseudodip-2other0.044630.95537 other
Pseudodip-3other0.000240.99976 other
Pseudodip-4 (testset)other0.006960.99304 other
Pseudodip-5 (testset)other0.000310.99969 other
Pseudodip-6 (testset)other3e-050.99997 other
Pseudodip-7other0.004050.99595 other
Pseudodip-8-Nother0.000840.99916 other
Pseudodip-9other0.003310.99669 other
Pseudodip-C10 (testset)other0.029260.97074 other
Pseudodip-C11 (testset)other0.904040.09596 T-ALL
Pseudodip-C12 (testset)other0.017610.98239 other
Pseudodip-C13other0.000280.99972 other
Pseudodip-C14 (testset)other0.020180.97982 other
Pseudodip-C15other0.003070.99693 other
Pseudodip-C16-N (testset)other0.007630.99237 other
Pseudodip-C17other4e-050.99996 other
Pseudodip-C18other7e-040.9993 other
Pseudodip-C19other0.000650.99935 other
Pseudodip-C1other0.003720.99628 other
Pseudodip-C2-Nother4e-040.9996 other
Pseudodip-C3other0.000140.99986 other
Pseudodip-C4other0.001190.99881 other
Pseudodip-C5 (testset)other0.000270.99973 other
Pseudodip-C6other0.001160.99884 other
Pseudodip-C7other0.000260.99974 other
Pseudodip-C8other0.000990.99901 other
Pseudodip-C9other0.000450.99955 other
Pseudodip-R1-N (testset)other0.000250.99975 other
T-ALL-10 (testset)T-ALL0.99982e-04 T-ALL
T-ALL-1 (testset)T-ALL10 T-ALL
T-ALL-2 (testset)T-ALL0.006550.99345 other
T-ALL-3T-ALL10 T-ALL
T-ALL-4 (testset)T-ALL10 T-ALL
T-ALL-5 (testset)T-ALL0.999973e-05 T-ALL
T-ALL-6T-ALL10 T-ALL
T-ALL-7 (testset)T-ALL10 T-ALL
T-ALL-8 (testset)T-ALL10 T-ALL
T-ALL-9T-ALL0.997150.00285 T-ALL
T-ALL-2M1T-ALL0.999982e-05 T-ALL
T-ALL-C10T-ALL10 T-ALL
T-ALL-C11T-ALL10 T-ALL
T-ALL-C12T-ALL0.999720.00028 T-ALL
T-ALL-C13T-ALL0.99991e-04 T-ALL
T-ALL-C14T-ALL0.861280.13872 T-ALL
T-ALL-C15 (testset)T-ALL0.999964e-05 T-ALL
T-ALL-C16 (testset)T-ALL0.431380.56862 other
T-ALL-C17T-ALL0.943040.05696 T-ALL
T-ALL-C18T-ALL0.827810.17219 T-ALL
T-ALL-C19T-ALL0.999650.00035 T-ALL
T-ALL-C1T-ALL0.980070.01993 T-ALL
T-ALL-C20T-ALL10 T-ALL
T-ALL-C21T-ALL0.999991e-05 T-ALL
T-ALL-C22 (testset)T-ALL0.999964e-05 T-ALL
T-ALL-C23T-ALL0.998930.00107 T-ALL
T-ALL-C24 (testset)T-ALL0.993850.00615 T-ALL
T-ALL-C25 (testset)T-ALL0.999991e-05 T-ALL
T-ALL-C26T-ALL0.999120.00088 T-ALL
T-ALL-C2T-ALL0.999946e-05 T-ALL
T-ALL-C3T-ALL10 T-ALL
T-ALL-C4T-ALL0.999982e-05 T-ALL
T-ALL-C5 (testset)T-ALL0.002230.99777 other
T-ALL-C6T-ALL0.999937e-05 T-ALL
T-ALL-C7 (testset)T-ALL0.999991e-05 T-ALL
T-ALL-C8T-ALL0.98550.0145 T-ALL
T-ALL-C9T-ALL0.99982e-04 T-ALL
T-ALL-R1T-ALL0.999937e-05 T-ALL
T-ALL-R2T-ALL0.999946e-05 T-ALL
T-ALL-R3T-ALL0.99330.0067 T-ALL
T-ALL-R4T-ALL0.999937e-05 T-ALL
T-ALL-R5T-ALL0.37130.6287 other
T-ALL-R6T-ALL0.971250.02875 T-ALL
TEL-AML1-10other0.000650.99935 other
TEL-AML1-11 (testset)other0.000170.99983 other
TEL-AML1-12other0.006290.99371 other
TEL-AML1-13 (testset)other0.003530.99647 other
TEL-AML1-14other0.000190.99981 other
TEL-AML1-1other0.001010.99899 other
TEL-AML1-2other0.001840.99816 other
TEL-AML1-3other0.002260.99774 other
TEL-AML1-4other0.000110.99989 other
TEL-AML1-5 (testset)other0.000410.99959 other
TEL-AML1-6other0.000360.99964 other
TEL-AML1-7other0.000130.99987 other
TEL-AML1-8 (testset)other9e-050.99991 other
TEL-AML1-9other0.000170.99983 other
TEL-AML1-2M1 (testset)other9e-050.99991 other
TEL-AML1-2M2other0.000230.99977 other
TEL-AML1-2M3other0.000150.99985 other
TEL-AML1-2M4 (testset)other0.01090.9891 other
TEL-AML1-2M5other4e-040.9996 other
TEL-AML1-C10other0.001470.99853 other
TEL-AML1-C11other0.0010.999 other
TEL-AML1-C12other0.001220.99878 other
TEL-AML1-C13other0.000110.99989 other
TEL-AML1-C14 (testset)other0.000380.99962 other
TEL-AML1-C15other0.000290.99971 other
TEL-AML1-C16other0.000930.99907 other
TEL-AML1-C17other0.002360.99764 other
TEL-AML1-C18other0.000180.99982 other
TEL-AML1-C19 (testset)other0.000330.99967 other
TEL-AML1-C1 (testset)other0.000990.99901 other
TEL-AML1-C20 (testset)other0.000480.99952 other
TEL-AML1-C21other0.000680.99932 other
TEL-AML1-C22other0.184740.81526 other
TEL-AML1-C23 (testset)other0.00340.9966 other
TEL-AML1-C24other0.000170.99983 other
TEL-AML1-C25other0.000380.99962 other
TEL-AML1-C26 (testset)other0.000210.99979 other
TEL-AML1-C27other0.000550.99945 other
TEL-AML1-C28 (testset)other0.000380.99962 other
TEL-AML1-C29other0.001010.99899 other
TEL-AML1-C2other0.011720.98828 other
TEL-AML1-C30other0.000630.99937 other
TEL-AML1-C31 (testset)other5e-050.99995 other
TEL-AML1-C32other0.000290.99971 other
TEL-AML1-C33 (testset)other3e-050.99997 other
TEL-AML1-C34other0.000180.99982 other
TEL-AML1-C35other0.003220.99678 other
TEL-AML1-C36 (testset)other0.001470.99853 other
TEL-AML1-C37other3e-040.9997 other
TEL-AML1-C38other6e-050.99994 other
TEL-AML1-C39other0.000890.99911 other
TEL-AML1-C3other0.000550.99945 other
TEL-AML1-C40other0.001310.99869 other
TEL-AML1-C41other0.000970.99903 other
TEL-AML1-C42other0.001610.99839 other
TEL-AML1-C43other0.000370.99963 other
TEL-AML1-C44other0.014720.98528 other
TEL-AML1-C45other0.000510.99949 other
TEL-AML1-C46other0.004060.99594 other
TEL-AML1-C47other8e-050.99992 other
TEL-AML1-C48other0.004780.99522 other
TEL-AML1-C49 (testset)other0.000240.99976 other
TEL-AML1-C4 (testset)other0.000550.99945 other
TEL-AML1-C50other0.000940.99906 other
TEL-AML1-C51 (testset)other0.000810.99919 other
TEL-AML1-C52other0.00250.9975 other
TEL-AML1-C53 (testset)other0.328580.67142 other
TEL-AML1-C54other8e-050.99992 other
TEL-AML1-C55 (testset)other0.042150.95785 other
TEL-AML1-C56other0.009160.99084 other
TEL-AML1-C57other0.000290.99971 other
TEL-AML1-C5 (testset)other0.00130.9987 other
TEL-AML1-C6other0.000170.99983 other
TEL-AML1-C7other0.004650.99535 other
TEL-AML1-C8other0.000990.99901 other
TEL-AML1-C9other0.006840.99316 other
TEL-AML1-R1 (testset)other0.001570.99843 other
TEL-AML1-R2 (testset)other0.008060.99194 other
TEL-AML1-R3other0.000880.99912 other

 


Generated by StAM on Tue Sep 7 18:29:52 2004