StAM Report: Prediction of MLL (explorative) - beta 0.05, 0.95



Information on Evaluation

Total number of samples: 327
Training samples: 327 ( 20 from MLL, 307 from other )
Test samples: 327 ( 20 from MLL, 307 from other )
Focus on class: MLL
Data frm chip: hgu95av2
Start node: GO:0008150 ( biological_process )


Annotation Information

Chip annotations for: hgu95av2
Chip data package: data package version 1.5.1
Mon May 10 11:12:58 2004
GO data package: GO package version 1.5.1
Mon May 10 11:46:39 2004
Root node chosen: GO:0008150 ( biological_process )
Number of probesets
on the chip:
12625
Probesets annotated
below GO:0008150 :
8679
Number of nodes
with direct annotations:
1359
Total number of nodes: 2204


Information on Cross Validation

Number of samples: 327
Number of classes: 2
Class weights: 'MLL': 0.05 'other': 0.95
Class prior: 'MLL':0.061 'other':0.939
Shrinkage candidates: 0, 0.011, 0.023, 0.034, 0.046, 0.057, 0.069, 0.08, 0.092, 0.103, 0.115, 0.126, 0.138, 0.149, 0.161, 0.172, 0.184, 0.195, 0.207, 0.218, 0.23, 0.241, 0.253, 0.264, 0.276, 0.287, 0.299, 0.31, 0.322, 0.333


Cross validated performance


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 Root.error.rateRoot.performanceMean.redundancyNodesGenes
00.006120.122972.967212677162
0.0110.006120.121712.968912677162
0.0230.006120.120322.970922677162
0.0340.006120.118782.973332677162
0.0460.006120.117072.97632677162
0.0570.006120.115142.980072677162
0.0690.006120.112952.983282677162
0.080.006120.110643.002712626996
0.0920.006120.108383.014892566992
0.1030.006120.106793.063592366954
0.1150.006120.105253.10642196764
0.1260.006120.103443.188041926707
0.1380.006120.101423.26851756499
0.1490.006120.09933.384131576266
0.1610.006120.096983.424091486224
0.1720.006120.093993.592511245782
0.1840.006120.091133.718291125385
0.1950.006120.088923.894731025074
0.2070.006120.086113.912511004945
0.2180.006120.082064.04687884179
0.230.009170.077484.39817693823
0.2410.009170.074284.71925613479
0.2530.012230.072894.86496583460
0.2640.012230.070664.5126563402
0.2760.006120.069134.91424413053
0.2870.006120.066785.06025362934
0.2990.006120.065184.40761332244
0.310.009170.067566.58996172008
0.3220.015290.070795.37065131814


Information on Model Fit


Performance vs. redundancy


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 Best DeltaRoot Error RatePerformanceRedundancy#Nodes#Genes
000.00610.1232.96722677162
0.10.0920.00610.10843.01492566992
0.20.0920.00610.10843.01492566992
0.30.0920.00610.10843.01492566992
0.40.29880.00610.06524.4076332244
0.50.29880.00610.06524.4076332244
0.60.29880.00610.06524.4076332244
0.70.29880.00610.06524.4076332244
0.80.29880.00610.06524.4076332244
0.90.29880.00610.06524.4076332244
10.29880.00610.06524.4076332244


Fit for D = 0.2988

Number of classes: 2
Class weights: 'MLL': 0.05 'other': 0.95
Class prior: 'MLL':0.061 'other':0.939
Chosen shrinkage level: 0.299
(by accepting the system default (after consulting weighting alternatives) )
Number of nodes left 33
Number of accessible genes 2244

Shrunken prediction graph

Hover over a node to see its description, click on it to view its detailed results.


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Nodewise evaluation


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Information on Predictions

Number of samples: 327 (20 from MLL, 307 from other)
Classes: MLL, other


Illustration of Performance on testdata

Nodewise evaluation


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Prediction image

Hover over a node description to see its ID, click on it to see detailed results.


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Details on Nodes


GO:0008150

biological_process

Biological
Process

Parent node

8 child nodes

Performance on training data

 SensitivitySpecificity
MLL0.850.99349
other0.993490.85

Performance on test data

 SensitivitySpecificity
MLL10.99674
other0.996741

Predictions

 ClassMLLotherPredictionn
BCR-ABL-1 (testset)other0.045040.95496 other
BCR-ABL-2 (testset)other0.00110.9989 other
BCR-ABL-3 (testset)other0.002290.99771 other
BCR-ABL-4 (testset)other0.000540.99946 other
BCR-ABL-5 (testset)other0.001180.99882 other
BCR-ABL-6 (testset)other0.012830.98717 other
BCR-ABL-7 (testset)other0.000770.99923 other
BCR-ABL-8 (testset)other0.016120.98388 other
BCR-ABL-9 (testset)other0.001340.99866 other
BCR-ABL-C1 (testset)other0.00260.9974 other
BCR-ABL-Hyperdip-10 (testset)other1e-040.9999 other
BCR-ABL-Hyperdip-R5 (testset)other9e-050.99991 other
BCR-ABL-R1 (testset)other0.016960.98304 other
BCR-ABL-R2 (testset)other0.000130.99987 other
BCR-ABL-R3 (testset)other0.005440.99456 other
E2A-PBX1-10 (testset)other0.021890.97811 other
E2A-PBX1-11 (testset)other0.026290.97371 other
E2A-PBX1-12 (testset)other0.02310.9769 other
E2A-PBX1-13 (testset)other0.00560.9944 other
E2A-PBX1-1 (testset)other0.012060.98794 other
E2A-PBX1-2 (testset)other0.012510.98749 other
E2A-PBX1-3 (testset)other0.010160.98984 other
E2A-PBX1-4 (testset)other0.005040.99496 other
E2A-PBX1-5 (testset)other0.006530.99347 other
E2A-PBX1-6 (testset)other0.020870.97913 other
E2A-PBX1-7 (testset)other0.002540.99746 other
E2A-PBX1-8 (testset)other0.002230.99777 other
E2A-PBX1-9 (testset)other0.001780.99822 other
E2A-PBX1-2M1 (testset)other0.066150.93385 other
E2A-PBX1-C10 (testset)other0.004810.99519 other
E2A-PBX1-C11 (testset)other0.0330.967 other
E2A-PBX1-C12 (testset)other0.004620.99538 other
E2A-PBX1-C1 (testset)other0.011520.98848 other
E2A-PBX1-C2 (testset)other0.011460.98854 other
E2A-PBX1-C3 (testset)other0.026580.97342 other
E2A-PBX1-C4 (testset)other0.004790.99521 other
E2A-PBX1-C5 (testset)other0.027940.97206 other
E2A-PBX1-C6 (testset)other0.009680.99032 other
E2A-PBX1-C7 (testset)other0.008260.99174 other
E2A-PBX1-C8 (testset)other0.008560.99144 other
E2A-PBX1-C9 (testset)other0.016150.98385 other
E2A-PBX1-R1 (testset)other0.005290.99471 other
Hyperdip-50-10 (testset)other0.000690.99931 other
Hyperdip-50-11 (testset)other0.000260.99974 other
Hyperdip-50-12 (testset)other0.000830.99917 other
Hyperdip-50-13 (testset)other0.000410.99959 other
Hyperdip-50-14 (testset)other0.000160.99984 other
Hyperdip-50-1 (testset)other0.004090.99591 other
Hyperdip-50-2 (testset)other8e-050.99992 other
Hyperdip-50-3 (testset)other0.001680.99832 other
Hyperdip-50-4 (testset)other0.000890.99911 other
Hyperdip-50-5 (testset)other0.002330.99767 other
Hyperdip-50-6 (testset)other0.000270.99973 other
Hyperdip-50-7 (testset)other0.018220.98178 other
Hyperdip-50-8 (testset)other0.001910.99809 other
Hyperdip-50-9 (testset)other0.003360.99664 other
Hyperdip-50-2M1 (testset)other0.001370.99863 other
Hyperdip-50-2M2 (testset)other0.008120.99188 other
Hyperdip-50-C10 (testset)other0.000710.99929 other
Hyperdip-50-C11 (testset)other0.000850.99915 other
Hyperdip-50-C12 (testset)other0.005930.99407 other
Hyperdip-50-C13 (testset)other0.000310.99969 other
Hyperdip-50-C14 (testset)other6e-040.9994 other
Hyperdip-50-C15 (testset)other0.001560.99844 other
Hyperdip-50-C16 (testset)other0.003530.99647 other
Hyperdip-50-C17 (testset)other0.001620.99838 other
Hyperdip-50-C18 (testset)other0.001340.99866 other
Hyperdip-50-C19 (testset)other0.126040.87396 other
Hyperdip-50-C1 (testset)other0.007240.99276 other
Hyperdip-50-C20 (testset)other8e-050.99992 other
Hyperdip-50-C21 (testset)other2e-040.9998 other
Hyperdip-50-C22 (testset)other9e-040.9991 other
Hyperdip-50-C23 (testset)other0.000640.99936 other
Hyperdip-50-C24 (testset)other0.000540.99946 other
Hyperdip-50-C25 (testset)other0.001230.99877 other
Hyperdip-50-C26 (testset)other0.001470.99853 other
Hyperdip-50-C27-N (testset)other0.00710.9929 other
Hyperdip-50-C28 (testset)other0.006480.99352 other
Hyperdip-50-C29 (testset)other0.002050.99795 other
Hyperdip-50-C2 (testset)other0.001960.99804 other
Hyperdip-50-C30 (testset)other0.003120.99688 other
Hyperdip-50-C31 (testset)other0.000710.99929 other
Hyperdip-50-C32 (testset)other0.00230.9977 other
Hyperdip-50-C33 (testset)other0.00110.9989 other
Hyperdip-50-C34 (testset)other0.000560.99944 other
Hyperdip-50-C35 (testset)other0.000290.99971 other
Hyperdip-50-C36 (testset)other0.000330.99967 other
Hyperdip-50-C37 (testset)other0.002390.99761 other
Hyperdip-50-C38 (testset)other0.000110.99989 other
Hyperdip-50-C39 (testset)other0.000630.99937 other
Hyperdip-50-C3 (testset)other0.004160.99584 other
Hyperdip-50-C40 (testset)other0.000960.99904 other
Hyperdip-50-C41 (testset)other0.000110.99989 other
Hyperdip-50-C42 (testset)other7e-050.99993 other
Hyperdip-50-C43 (testset)other0.006810.99319 other
Hyperdip-50-C4 (testset)other0.002650.99735 other
Hyperdip-50-C5 (testset)other0.000290.99971 other
Hyperdip-50-C6 (testset)other0.001850.99815 other
Hyperdip-50-C7 (testset)other0.002580.99742 other
Hyperdip-50-C8 (testset)other0.000480.99952 other
Hyperdip-50-C9 (testset)other0.001070.99893 other
Hyperdip-50-R1 (testset)other0.000390.99961 other
Hyperdip-50-R2 (testset)other0.003090.99691 other
Hyperdip-50-R3 (testset)other0.006690.99331 other
Hyperdip-50-R4 (testset)other0.000490.99951 other
Hyperdip-50-R5 (testset)other0.001310.99869 other
Hyperdip47-50-1 (testset)other0.001910.99809 other
Hyperdip47-50-2 (testset)other5e-050.99995 other
Hyperdip47-50-3 (testset)other0.113890.88611 other
Hyperdip47-50-2M1 (testset)other0.003550.99645 other
Hyperdip47-50-C10 (testset)other0.001290.99871 other
Hyperdip47-50-C11 (testset)other0.003150.99685 other
Hyperdip47-50-C12 (testset)other0.000410.99959 other
Hyperdip47-50-C13 (testset)other0.136650.86335 other
Hyperdip47-50-C14-N (testset)other0.026220.97378 other
Hyperdip47-50-C15 (testset)other0.002050.99795 other
Hyperdip47-50-C16 (testset)other0.45930.5407 other
Hyperdip47-50-C17 (testset)other4e-040.9996 other
Hyperdip47-50-C18 (testset)other0.031270.96873 other
Hyperdip47-50-C19 (testset)other0.00990.9901 other
Hyperdip47-50-C1 (testset)other0.150480.84952 other
Hyperdip47-50-C2 (testset)other0.026620.97338 other
Hyperdip47-50-C3-N (testset)other0.004850.99515 other
Hyperdip47-50-C4 (testset)other0.005330.99467 other
Hyperdip47-50-C5 (testset)other0.023990.97601 other
Hyperdip47-50-C6 (testset)other3e-050.99997 other
Hyperdip47-50-C7 (testset)other0.014630.98537 other
Hyperdip47-50-C8 (testset)other0.000350.99965 other
Hyperdip47-50-C9 (testset)other0.015470.98453 other
Hypodip-1 (testset)other0.014540.98546 other
Hypodip-2 (testset)other0.00160.9984 other
Hypodip-2M1 (testset)other0.003320.99668 other
Hypodip-C1 (testset)other0.001420.99858 other
Hypodip-C2 (testset)other0.003860.99614 other
Hypodip-C3 (testset)other0.001930.99807 other
Hypodip-C4 (testset)other0.603310.39669 MLL
Hypodip-C5 (testset)other0.000690.99931 other
Hypodip-C6 (testset)other0.015750.98425 other
MLL-1 (testset)MLL0.970570.02943 MLL
MLL-2 (testset)MLL0.946750.05325 MLL
MLL-3 (testset)MLL0.998690.00131 MLL
MLL-4 (testset)MLL0.992420.00758 MLL
MLL-5 (testset)MLL0.981430.01857 MLL
MLL-6 (testset)MLL0.949850.05015 MLL
MLL-7 (testset)MLL0.629160.37084 MLL
MLL-8 (testset)MLL0.627620.37238 MLL
MLL-2M1 (testset)MLL0.914740.08526 MLL
MLL-2M2 (testset)MLL0.996940.00306 MLL
MLL-C1 (testset)MLL0.997670.00233 MLL
MLL-C2 (testset)MLL0.997720.00228 MLL
MLL-C3 (testset)MLL0.688850.31115 MLL
MLL-C4 (testset)MLL0.531040.46896 MLL
MLL-C5 (testset)MLL0.969890.03011 MLL
MLL-C6 (testset)MLL0.515790.48421 MLL
MLL-R1 (testset)MLL0.539720.46028 MLL
MLL-R2 (testset)MLL0.993150.00685 MLL
MLL-R3 (testset)MLL0.999110.00089 MLL
MLL-R4 (testset)MLL0.830460.16954 MLL
Normal-1 (testset)other0.05540.9446 other
Normal-2 (testset)other0.081480.91852 other
Normal-3 (testset)other0.001870.99813 other
Normal-C1-N (testset)other0.002140.99786 other
Normal-C10 (testset)other0.094780.90522 other
Normal-C11-N (testset)other0.002810.99719 other
Normal-C12 (testset)other0.008430.99157 other
Normal-C2-N (testset)other0.046690.95331 other
Normal-C3-N (testset)other0.025710.97429 other
Normal-C4-N (testset)other0.002210.99779 other
Normal-C5 (testset)other0.017120.98288 other
Normal-C6 (testset)other0.008340.99166 other
Normal-C7-N (testset)other0.022550.97745 other
Normal-C8 (testset)other0.029560.97044 other
Normal-C9 (testset)other0.001330.99867 other
Normal-R1 (testset)other0.060680.93932 other
Normal-R2-N (testset)other0.00240.9976 other
Normal-R3 (testset)other0.013930.98607 other
Pseudodip-1 (testset)other0.001360.99864 other
Pseudodip-2 (testset)other4e-050.99996 other
Pseudodip-3 (testset)other0.006190.99381 other
Pseudodip-4 (testset)other0.000720.99928 other
Pseudodip-5 (testset)other0.00210.9979 other
Pseudodip-6 (testset)other0.00720.9928 other
Pseudodip-7 (testset)other0.005470.99453 other
Pseudodip-8-N (testset)other0.069920.93008 other
Pseudodip-9 (testset)other0.001580.99842 other
Pseudodip-C10 (testset)other0.000150.99985 other
Pseudodip-C11 (testset)other0.000780.99922 other
Pseudodip-C12 (testset)other0.000270.99973 other
Pseudodip-C13 (testset)other0.0480.952 other
Pseudodip-C14 (testset)other0.016650.98335 other
Pseudodip-C15 (testset)other0.001740.99826 other
Pseudodip-C16-N (testset)other0.004790.99521 other
Pseudodip-C17 (testset)other0.000810.99919 other
Pseudodip-C18 (testset)other0.042380.95762 other
Pseudodip-C19 (testset)other0.038190.96181 other
Pseudodip-C1 (testset)other0.09870.9013 other
Pseudodip-C2-N (testset)other0.032220.96778 other
Pseudodip-C3 (testset)other0.005860.99414 other
Pseudodip-C4 (testset)other0.004270.99573 other
Pseudodip-C5 (testset)other0.029530.97047 other
Pseudodip-C6 (testset)other0.002830.99717 other
Pseudodip-C7 (testset)other0.001820.99818 other
Pseudodip-C8 (testset)other0.028150.97185 other
Pseudodip-C9 (testset)other0.005280.99472 other
Pseudodip-R1-N (testset)other0.000890.99911 other
T-ALL-10 (testset)other0.006880.99312 other
T-ALL-1 (testset)other0.299520.70048 other
T-ALL-2 (testset)other0.024210.97579 other
T-ALL-3 (testset)other0.001510.99849 other
T-ALL-4 (testset)other0.003280.99672 other
T-ALL-5 (testset)other0.017230.98277 other
T-ALL-6 (testset)other0.005670.99433 other
T-ALL-7 (testset)other0.011530.98847 other
T-ALL-8 (testset)other0.02460.9754 other
T-ALL-9 (testset)other0.002460.99754 other
T-ALL-2M1 (testset)other0.048760.95124 other
T-ALL-C10 (testset)other0.001880.99812 other
T-ALL-C11 (testset)other0.000580.99942 other
T-ALL-C12 (testset)other0.03910.9609 other
T-ALL-C13 (testset)other0.004250.99575 other
T-ALL-C14 (testset)other0.008490.99151 other
T-ALL-C15 (testset)other0.010340.98966 other
T-ALL-C16 (testset)other0.010590.98941 other
T-ALL-C17 (testset)other0.012120.98788 other
T-ALL-C18 (testset)other0.307170.69283 other
T-ALL-C19 (testset)other0.009530.99047 other
T-ALL-C1 (testset)other0.021370.97863 other
T-ALL-C20 (testset)other0.109230.89077 other
T-ALL-C21 (testset)other0.006190.99381 other
T-ALL-C22 (testset)other0.005640.99436 other
T-ALL-C23 (testset)other0.003590.99641 other
T-ALL-C24 (testset)other0.005140.99486 other
T-ALL-C25 (testset)other0.008440.99156 other
T-ALL-C26 (testset)other0.00620.9938 other
T-ALL-C2 (testset)other0.021230.97877 other
T-ALL-C3 (testset)other0.00140.9986 other
T-ALL-C4 (testset)other0.007810.99219 other
T-ALL-C5 (testset)other0.157480.84252 other
T-ALL-C6 (testset)other0.01020.9898 other
T-ALL-C7 (testset)other0.033910.96609 other
T-ALL-C8 (testset)other0.010540.98946 other
T-ALL-C9 (testset)other0.002940.99706 other
T-ALL-R1 (testset)other0.003880.99612 other
T-ALL-R2 (testset)other0.003640.99636 other
T-ALL-R3 (testset)other0.00180.9982 other
T-ALL-R4 (testset)other0.000960.99904 other
T-ALL-R5 (testset)other0.279890.72011 other
T-ALL-R6 (testset)other0.008410.99159 other
TEL-AML1-10 (testset)other2e-050.99998 other
TEL-AML1-11 (testset)other0.001320.99868 other
TEL-AML1-12 (testset)other0.000160.99984 other
TEL-AML1-13 (testset)other0.000570.99943 other
TEL-AML1-14 (testset)other8e-050.99992 other
TEL-AML1-1 (testset)other0.004170.99583 other
TEL-AML1-2 (testset)other0.000520.99948 other
TEL-AML1-3 (testset)other1e-040.9999 other
TEL-AML1-4 (testset)other0.000310.99969 other
TEL-AML1-5 (testset)other0.002560.99744 other
TEL-AML1-6 (testset)other0.000920.99908 other
TEL-AML1-7 (testset)other8e-050.99992 other
TEL-AML1-8 (testset)other0.000310.99969 other
TEL-AML1-9 (testset)other0.000230.99977 other
TEL-AML1-2M1 (testset)other5e-050.99995 other
TEL-AML1-2M2 (testset)other0.000990.99901 other
TEL-AML1-2M3 (testset)other0.000820.99918 other
TEL-AML1-2M4 (testset)other0.000520.99948 other
TEL-AML1-2M5 (testset)other0.000240.99976 other
TEL-AML1-C10 (testset)other0.000610.99939 other
TEL-AML1-C11 (testset)other0.000240.99976 other
TEL-AML1-C12 (testset)other0.000670.99933 other
TEL-AML1-C13 (testset)other0.000570.99943 other
TEL-AML1-C14 (testset)other0.001370.99863 other
TEL-AML1-C15 (testset)other9e-050.99991 other
TEL-AML1-C16 (testset)other0.001250.99875 other
TEL-AML1-C17 (testset)other0.00470.9953 other
TEL-AML1-C18 (testset)other0.000230.99977 other
TEL-AML1-C19 (testset)other3e-040.9997 other
TEL-AML1-C1 (testset)other6e-040.9994 other
TEL-AML1-C20 (testset)other9e-050.99991 other
TEL-AML1-C21 (testset)other0.000940.99906 other
TEL-AML1-C22 (testset)other0.000270.99973 other
TEL-AML1-C23 (testset)other0.003850.99615 other
TEL-AML1-C24 (testset)other0.000170.99983 other
TEL-AML1-C25 (testset)other0.000120.99988 other
TEL-AML1-C26 (testset)other0.000210.99979 other
TEL-AML1-C27 (testset)other0.000510.99949 other
TEL-AML1-C28 (testset)other0.000170.99983 other
TEL-AML1-C29 (testset)other2e-050.99998 other
TEL-AML1-C2 (testset)other0.000110.99989 other
TEL-AML1-C30 (testset)other1e-050.99999 other
TEL-AML1-C31 (testset)other2e-050.99998 other
TEL-AML1-C32 (testset)other1e-050.99999 other
TEL-AML1-C33 (testset)other0.000170.99983 other
TEL-AML1-C34 (testset)other5e-050.99995 other
TEL-AML1-C35 (testset)other0.003860.99614 other
TEL-AML1-C36 (testset)other0.000690.99931 other
TEL-AML1-C37 (testset)other0.000230.99977 other
TEL-AML1-C38 (testset)other0.000430.99957 other
TEL-AML1-C39 (testset)other0.000930.99907 other
TEL-AML1-C3 (testset)other0.000320.99968 other
TEL-AML1-C40 (testset)other0.000410.99959 other
TEL-AML1-C41 (testset)other0.000230.99977 other
TEL-AML1-C42 (testset)other0.000650.99935 other
TEL-AML1-C43 (testset)other0.000370.99963 other
TEL-AML1-C44 (testset)other0.001750.99825 other
TEL-AML1-C45 (testset)other0.004280.99572 other
TEL-AML1-C46 (testset)other0.000240.99976 other
TEL-AML1-C47 (testset)other0.000110.99989 other
TEL-AML1-C48 (testset)other8e-050.99992 other
TEL-AML1-C49 (testset)other0.000990.99901 other
TEL-AML1-C4 (testset)other3e-040.9997 other
TEL-AML1-C50 (testset)other0.001630.99837 other
TEL-AML1-C51 (testset)other0.000340.99966 other
TEL-AML1-C52 (testset)other7e-050.99993 other
TEL-AML1-C53 (testset)other0.000560.99944 other
TEL-AML1-C54 (testset)other3e-050.99997 other
TEL-AML1-C55 (testset)other2e-040.9998 other
TEL-AML1-C56 (testset)other0.000930.99907 other
TEL-AML1-C57 (testset)other0.000190.99981 other
TEL-AML1-C5 (testset)other0.000160.99984 other
TEL-AML1-C6 (testset)other0.000220.99978 other
TEL-AML1-C7 (testset)other0.000310.99969 other
TEL-AML1-C8 (testset)other0.00460.9954 other
TEL-AML1-C9 (testset)other0.003850.99615 other
TEL-AML1-R1 (testset)other0.001450.99855 other
TEL-AML1-R2 (testset)other0.000420.99958 other
TEL-AML1-R3 (testset)other0.000540.99946 other

 


Generated by StAM on Tue Sep 7 22:04:31 2004