GO:0006139

GO:0006139

nucleobase, nucleoside, nucleotide and nucleic acid metabolism (annotated genes)

Biological Process

Parent node

GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolism

This leaf node contains 25 genes

The following 25 of these are used in classification:

	Symbol	Genename	E2A-PBX1 score	other score
430_at	NP	nucleoside phosphorylase	2.6162	-0.2355
32441_at	CTPS	CTP synthase	0.5601	-0.0504
40272_at	CRMP1	collapsin response mediator protein 1	0.5048	-0.0454
40607_at	DPYSL2	dihydropyrimidinase-like 2	-0.4996	0.045
38389_at	OAS1	2',5'-oligoadenylate synthetase 1, 40/46kDa	-0.486	0.0437
38388_at	OAS1	2',5'-oligoadenylate synthetase 1, 40/46kDa	-0.3425	0.0308
886_at	DCK	deoxycytidine kinase	-0.3091	0.0278
39079_at	ERH	enhancer of rudimentary homolog (Drosophila)	0.2868	-0.0258
144_at	TK2	thymidine kinase 2, mitochondrial	-0.276	0.0248
34411_at	PAPSS1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	-0.2562	0.0231
39661_s_at	SLC29A2	solute carrier family 29 (nucleoside transporters), member 2	0.1777	-0.016
38412_at	ZNRD1	zinc ribbon domain containing, 1	-0.1574	0.0142
36233_at	PAPSS2	3'-phosphoadenosine 5'-phosphosulfate synthase 2	-0.1411	0.0127
34985_at	CILP	cartilage intermediate layer protein, nucleotide pyrophosphohydrolase	0.1257	-0.0113
38811_at	ATIC	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	0.1152	-0.0104
35037_at	SLC28A1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	-0.0999	0.009
1117_at	CDA	cytidine deaminase	0.0929	-0.0084
41422_at	DPYS	dihydropyrimidinase	0.0877	-0.0079
32331_at	AK3	adenylate kinase 3	-0.0708	0.0064
36149_at	DPYSL3	dihydropyrimidinase-like 3	-0.0524	0.0047
38150_at	MTAP	methylthioadenosine phosphorylase	-0.0345	0.0031
37335_at	DGUOK	deoxyguanosine kinase	0.0308	-0.0028
34057_at	SLC28A2	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	0.0297	-0.0027
36923_at	FPGS	folylpolyglutamate synthase	0.015	-0.0013
32810_at	TPMT	thiopurine S-methyltransferase	-0.0031	3e-04

Performance on training data

• Error rate: 0.02294
• Performance: 0.07435
• Redundancy: 4.36515

	Sensitivity	Specificity
E2A-PBX1	0.77778	0.995
other	0.995	0.77778

Performance on test data

• Error rate: 0.02752
• Performance: 0.16086
• Redundancy: 4.23802

	Sensitivity	Specificity
E2A-PBX1	0.66667	1
other	1	0.66667

Predictions

	Class	E2A-PBX1	other	Predictionn
BCR-ABL-1	other	7e-05	0.99993	other
BCR-ABL-2	other	3e-05	0.99997	other
BCR-ABL-3 (testset)	other	0.01669	0.98331	other
BCR-ABL-4	other	9e-05	0.99991	other
BCR-ABL-5	other	0.00018	0.99982	other
BCR-ABL-6	other	0.00011	0.99989	other
BCR-ABL-7	other	0.00033	0.99967	other
BCR-ABL-8	other	0.00966	0.99034	other
BCR-ABL-9	other	0.00071	0.99929	other
BCR-ABL-C1	other	0.00038	0.99962	other
BCR-ABL-Hyperdip-10	other	0.00519	0.99481	other
BCR-ABL-Hyperdip-R5	other	0.00044	0.99956	other
BCR-ABL-R1	other	0.00037	0.99963	other
BCR-ABL-R2 (testset)	other	0.00076	0.99924	other
BCR-ABL-R3	other	0.00015	0.99985	other
E2A-PBX1-10	E2A-PBX1	0.95776	0.04224	E2A-PBX1
E2A-PBX1-11 (testset)	E2A-PBX1	0.94508	0.05492	E2A-PBX1
E2A-PBX1-12	E2A-PBX1	0.09474	0.90526	other
E2A-PBX1-13 (testset)	E2A-PBX1	0.9851	0.0149	E2A-PBX1
E2A-PBX1-1	E2A-PBX1	0.98527	0.01473	E2A-PBX1
E2A-PBX1-2	E2A-PBX1	0.85314	0.14686	E2A-PBX1
E2A-PBX1-3	E2A-PBX1	0.92846	0.07154	E2A-PBX1
E2A-PBX1-4 (testset)	E2A-PBX1	0.14235	0.85765	other
E2A-PBX1-5 (testset)	E2A-PBX1	0.81783	0.18217	E2A-PBX1
E2A-PBX1-6	E2A-PBX1	0.98879	0.01121	E2A-PBX1
E2A-PBX1-7	E2A-PBX1	0.83027	0.16973	E2A-PBX1
E2A-PBX1-8	E2A-PBX1	0.40125	0.59875	other
E2A-PBX1-9	E2A-PBX1	0.9978	0.0022	E2A-PBX1
E2A-PBX1-2M1	E2A-PBX1	0.98544	0.01456	E2A-PBX1
E2A-PBX1-C10 (testset)	E2A-PBX1	0.9719	0.0281	E2A-PBX1
E2A-PBX1-C11 (testset)	E2A-PBX1	0.00932	0.99068	other
E2A-PBX1-C12	E2A-PBX1	0.97517	0.02483	E2A-PBX1
E2A-PBX1-C1 (testset)	E2A-PBX1	0.82323	0.17677	E2A-PBX1
E2A-PBX1-C2	E2A-PBX1	0.34086	0.65914	other
E2A-PBX1-C3	E2A-PBX1	0.95807	0.04193	E2A-PBX1
E2A-PBX1-C4 (testset)	E2A-PBX1	0.85509	0.14491	E2A-PBX1
E2A-PBX1-C5	E2A-PBX1	0.4913	0.5087	other
E2A-PBX1-C6	E2A-PBX1	0.96843	0.03157	E2A-PBX1
E2A-PBX1-C7	E2A-PBX1	0.99935	0.00065	E2A-PBX1
E2A-PBX1-C8	E2A-PBX1	0.98015	0.01985	E2A-PBX1
E2A-PBX1-C9 (testset)	E2A-PBX1	0.37049	0.62951	other
E2A-PBX1-R1	E2A-PBX1	0.76147	0.23853	E2A-PBX1
Hyperdip-50-10 (testset)	other	0.01535	0.98465	other
Hyperdip-50-11 (testset)	other	1e-04	0.9999	other
Hyperdip-50-12	other	0.00223	0.99777	other
Hyperdip-50-13 (testset)	other	0.00105	0.99895	other
Hyperdip-50-14	other	0.02929	0.97071	other
Hyperdip-50-1 (testset)	other	0.00079	0.99921	other
Hyperdip-50-2 (testset)	other	0.0559	0.9441	other
Hyperdip-50-3	other	0.00278	0.99722	other
Hyperdip-50-4 (testset)	other	0.00133	0.99867	other
Hyperdip-50-5	other	0.00324	0.99676	other
Hyperdip-50-6	other	0.00057	0.99943	other
Hyperdip-50-7	other	0.00168	0.99832	other
Hyperdip-50-8 (testset)	other	0.01051	0.98949	other
Hyperdip-50-9	other	0.00071	0.99929	other
Hyperdip-50-2M1 (testset)	other	0.00293	0.99707	other
Hyperdip-50-2M2 (testset)	other	0.00058	0.99942	other
Hyperdip-50-C10	other	0.00095	0.99905	other
Hyperdip-50-C11	other	0.01215	0.98785	other
Hyperdip-50-C12	other	0.00111	0.99889	other
Hyperdip-50-C13	other	0.00019	0.99981	other
Hyperdip-50-C14	other	0.00035	0.99965	other
Hyperdip-50-C15	other	0.00029	0.99971	other
Hyperdip-50-C16 (testset)	other	0.00018	0.99982	other
Hyperdip-50-C17	other	0.00779	0.99221	other
Hyperdip-50-C18	other	0.00401	0.99599	other
Hyperdip-50-C19 (testset)	other	0.01129	0.98871	other
Hyperdip-50-C1	other	0.03064	0.96936	other
Hyperdip-50-C20	other	0.02259	0.97741	other
Hyperdip-50-C21	other	0.00766	0.99234	other
Hyperdip-50-C22	other	0.00069	0.99931	other
Hyperdip-50-C23	other	0.00043	0.99957	other
Hyperdip-50-C24 (testset)	other	0.00142	0.99858	other
Hyperdip-50-C25	other	0.02859	0.97141	other
Hyperdip-50-C26 (testset)	other	0.00024	0.99976	other
Hyperdip-50-C27-N (testset)	other	0.00062	0.99938	other
Hyperdip-50-C28	other	0.00051	0.99949	other
Hyperdip-50-C29	other	0.00324	0.99676	other
Hyperdip-50-C2 (testset)	other	0.00062	0.99938	other
Hyperdip-50-C30	other	0.0027	0.9973	other
Hyperdip-50-C31	other	0.00034	0.99966	other
Hyperdip-50-C32 (testset)	other	0.00245	0.99755	other
Hyperdip-50-C33	other	0.00064	0.99936	other
Hyperdip-50-C34	other	0.00337	0.99663	other
Hyperdip-50-C35 (testset)	other	0.00049	0.99951	other
Hyperdip-50-C36	other	0.00515	0.99485	other
Hyperdip-50-C37	other	0.00112	0.99888	other
Hyperdip-50-C38 (testset)	other	0.00054	0.99946	other
Hyperdip-50-C39	other	0.00042	0.99958	other
Hyperdip-50-C3	other	0.00038	0.99962	other
Hyperdip-50-C40 (testset)	other	0.00056	0.99944	other
Hyperdip-50-C41	other	0.04841	0.95159	other
Hyperdip-50-C42	other	0.02114	0.97886	other
Hyperdip-50-C43 (testset)	other	1e-05	0.99999	other
Hyperdip-50-C4	other	0.00202	0.99798	other
Hyperdip-50-C5 (testset)	other	0.00029	0.99971	other
Hyperdip-50-C6	other	0.00173	0.99827	other
Hyperdip-50-C7	other	0.00123	0.99877	other
Hyperdip-50-C8	other	5e-05	0.99995	other
Hyperdip-50-C9	other	0.00184	0.99816	other
Hyperdip-50-R1	other	0.00058	0.99942	other
Hyperdip-50-R2	other	0.00115	0.99885	other
Hyperdip-50-R3	other	0	1	other
Hyperdip-50-R4 (testset)	other	0.00052	0.99948	other
Hyperdip-50-R5 (testset)	other	0.0048	0.9952	other
Hyperdip47-50-1	other	0.00035	0.99965	other
Hyperdip47-50-2 (testset)	other	0.04954	0.95046	other
Hyperdip47-50-3	other	0.50872	0.49128	E2A-PBX1
Hyperdip47-50-2M1 (testset)	other	0.00118	0.99882	other
Hyperdip47-50-C10	other	0.00131	0.99869	other
Hyperdip47-50-C11	other	0.00013	0.99987	other
Hyperdip47-50-C12	other	0.00076	0.99924	other
Hyperdip47-50-C13 (testset)	other	0.00166	0.99834	other
Hyperdip47-50-C14-N	other	0.49828	0.50172	other
Hyperdip47-50-C15 (testset)	other	0.00093	0.99907	other
Hyperdip47-50-C16 (testset)	other	0.00025	0.99975	other
Hyperdip47-50-C17	other	0.00192	0.99808	other
Hyperdip47-50-C18 (testset)	other	0.00037	0.99963	other
Hyperdip47-50-C19	other	0.05601	0.94399	other
Hyperdip47-50-C1	other	0.00533	0.99467	other
Hyperdip47-50-C2	other	0.00023	0.99977	other
Hyperdip47-50-C3-N	other	0.00165	0.99835	other
Hyperdip47-50-C4	other	0.00018	0.99982	other
Hyperdip47-50-C5 (testset)	other	0.00865	0.99135	other
Hyperdip47-50-C6	other	0.00564	0.99436	other
Hyperdip47-50-C7 (testset)	other	0.00108	0.99892	other
Hyperdip47-50-C8	other	0.00114	0.99886	other
Hyperdip47-50-C9 (testset)	other	0.00104	0.99896	other
Hypodip-1 (testset)	other	8e-05	0.99992	other
Hypodip-2 (testset)	other	0.00016	0.99984	other
Hypodip-2M1	other	0.00068	0.99932	other
Hypodip-C1	other	0.00067	0.99933	other
Hypodip-C2	other	3e-05	0.99997	other
Hypodip-C3	other	0.00086	0.99914	other
Hypodip-C4	other	0.00205	0.99795	other
Hypodip-C5	other	0.00019	0.99981	other
Hypodip-C6	other	0.00105	0.99895	other
MLL-1	other	0.00167	0.99833	other
MLL-2	other	0.00043	0.99957	other
MLL-3 (testset)	other	0.00016	0.99984	other
MLL-4	other	2e-04	0.9998	other
MLL-5	other	0.00048	0.99952	other
MLL-6	other	0.0016	0.9984	other
MLL-7 (testset)	other	0.00217	0.99783	other
MLL-8	other	0.00059	0.99941	other
MLL-2M1	other	0.00693	0.99307	other
MLL-2M2	other	0.00332	0.99668	other
MLL-C1	other	0.05147	0.94853	other
MLL-C2 (testset)	other	0.00434	0.99566	other
MLL-C3 (testset)	other	0.00764	0.99236	other
MLL-C4	other	0.00109	0.99891	other
MLL-C5	other	3e-05	0.99997	other
MLL-C6 (testset)	other	0.00885	0.99115	other
MLL-R1	other	3e-05	0.99997	other
MLL-R2 (testset)	other	0.00049	0.99951	other
MLL-R3 (testset)	other	0.03353	0.96647	other
MLL-R4 (testset)	other	0.00061	0.99939	other
Normal-1	other	0.00127	0.99873	other
Normal-2	other	0.00137	0.99863	other
Normal-3	other	0.00016	0.99984	other
Normal-C1-N	other	0.01532	0.98468	other
Normal-C10	other	0.00015	0.99985	other
Normal-C11-N (testset)	other	0.00048	0.99952	other
Normal-C12 (testset)	other	0.00208	0.99792	other
Normal-C2-N	other	0.00203	0.99797	other
Normal-C3-N	other	0.00123	0.99877	other
Normal-C4-N	other	0.003	0.997	other
Normal-C5 (testset)	other	0.00015	0.99985	other
Normal-C6	other	7e-05	0.99993	other
Normal-C7-N	other	0.00052	0.99948	other
Normal-C8	other	6e-05	0.99994	other
Normal-C9 (testset)	other	0.00019	0.99981	other
Normal-R1	other	0.00073	0.99927	other
Normal-R2-N	other	0.00825	0.99175	other
Normal-R3 (testset)	other	0.00038	0.99962	other
Pseudodip-1 (testset)	other	4e-05	0.99996	other
Pseudodip-2	other	0.00011	0.99989	other
Pseudodip-3	other	0.00016	0.99984	other
Pseudodip-4	other	0.00111	0.99889	other
Pseudodip-5	other	0.01609	0.98391	other
Pseudodip-6	other	0.00196	0.99804	other
Pseudodip-7 (testset)	other	0.00035	0.99965	other
Pseudodip-8-N (testset)	other	0.08923	0.91077	other
Pseudodip-9	other	0.00305	0.99695	other
Pseudodip-C10	other	0.00232	0.99768	other
Pseudodip-C11	other	0.00032	0.99968	other
Pseudodip-C12	other	1e-04	0.9999	other
Pseudodip-C13	other	0.0212	0.9788	other
Pseudodip-C14 (testset)	other	0.00141	0.99859	other
Pseudodip-C15	other	5e-05	0.99995	other
Pseudodip-C16-N (testset)	other	0.01279	0.98721	other
Pseudodip-C17 (testset)	other	0.00025	0.99975	other
Pseudodip-C18	other	0.00018	0.99982	other
Pseudodip-C19	other	0.00433	0.99567	other
Pseudodip-C1	other	3e-05	0.99997	other
Pseudodip-C2-N (testset)	other	0.00351	0.99649	other
Pseudodip-C3	other	4e-05	0.99996	other
Pseudodip-C4	other	2e-05	0.99998	other
Pseudodip-C5 (testset)	other	3e-05	0.99997	other
Pseudodip-C6	other	0.00061	0.99939	other
Pseudodip-C7 (testset)	other	0.00017	0.99983	other
Pseudodip-C8 (testset)	other	0.00048	0.99952	other
Pseudodip-C9	other	0.00017	0.99983	other
Pseudodip-R1-N	other	0.00097	0.99903	other
T-ALL-10	other	0.00041	0.99959	other
T-ALL-1	other	0.00011	0.99989	other
T-ALL-2	other	1e-05	0.99999	other
T-ALL-3	other	0.00093	0.99907	other
T-ALL-4 (testset)	other	9e-05	0.99991	other
T-ALL-5	other	0.02361	0.97639	other
T-ALL-6	other	2e-04	0.9998	other
T-ALL-7 (testset)	other	0.00044	0.99956	other
T-ALL-8	other	0.00026	0.99974	other
T-ALL-9 (testset)	other	0.05444	0.94556	other
T-ALL-2M1	other	0.00289	0.99711	other
T-ALL-C10	other	0.0022	0.9978	other
T-ALL-C11	other	0.00107	0.99893	other
T-ALL-C12	other	9e-05	0.99991	other
T-ALL-C13	other	0.00038	0.99962	other
T-ALL-C14	other	1e-05	0.99999	other
T-ALL-C15 (testset)	other	0.0011	0.9989	other
T-ALL-C16	other	1e-05	0.99999	other
T-ALL-C17	other	6e-05	0.99994	other
T-ALL-C18 (testset)	other	0.00078	0.99922	other
T-ALL-C19 (testset)	other	0.00037	0.99963	other
T-ALL-C1 (testset)	other	0.00012	0.99988	other
T-ALL-C20	other	0.00023	0.99977	other
T-ALL-C21	other	8e-05	0.99992	other
T-ALL-C22	other	0.00046	0.99954	other
T-ALL-C23	other	0.00105	0.99895	other
T-ALL-C24	other	2e-05	0.99998	other
T-ALL-C25	other	0.00038	0.99962	other
T-ALL-C26 (testset)	other	7e-05	0.99993	other
T-ALL-C2 (testset)	other	4e-05	0.99996	other
T-ALL-C3	other	6e-05	0.99994	other
T-ALL-C4 (testset)	other	0.00039	0.99961	other
T-ALL-C5 (testset)	other	0.00011	0.99989	other
T-ALL-C6 (testset)	other	0.00027	0.99973	other
T-ALL-C7	other	0.00011	0.99989	other
T-ALL-C8	other	2e-05	0.99998	other
T-ALL-C9	other	0.00284	0.99716	other
T-ALL-R1	other	0.0179	0.9821	other
T-ALL-R2	other	0.00013	0.99987	other
T-ALL-R3	other	0.00137	0.99863	other
T-ALL-R4	other	0.00079	0.99921	other
T-ALL-R5 (testset)	other	0.0042	0.9958	other
T-ALL-R6	other	9e-05	0.99991	other
TEL-AML1-10 (testset)	other	0.02121	0.97879	other
TEL-AML1-11	other	0.00037	0.99963	other
TEL-AML1-12 (testset)	other	0.00053	0.99947	other
TEL-AML1-13	other	0.01095	0.98905	other
TEL-AML1-14	other	0.00017	0.99983	other
TEL-AML1-1 (testset)	other	3e-05	0.99997	other
TEL-AML1-2	other	0.00021	0.99979	other
TEL-AML1-3 (testset)	other	0.00585	0.99415	other
TEL-AML1-4	other	8e-05	0.99992	other
TEL-AML1-5	other	0.00018	0.99982	other
TEL-AML1-6 (testset)	other	0.00042	0.99958	other
TEL-AML1-7 (testset)	other	0.00035	0.99965	other
TEL-AML1-8	other	1e-04	0.9999	other
TEL-AML1-9	other	0.00128	0.99872	other
TEL-AML1-2M1 (testset)	other	0.01027	0.98973	other
TEL-AML1-2M2	other	0.00044	0.99956	other
TEL-AML1-2M3	other	9e-05	0.99991	other
TEL-AML1-2M4 (testset)	other	0.0014	0.9986	other
TEL-AML1-2M5	other	0.00035	0.99965	other
TEL-AML1-C10 (testset)	other	7e-05	0.99993	other
TEL-AML1-C11	other	0.00332	0.99668	other
TEL-AML1-C12 (testset)	other	0.00041	0.99959	other
TEL-AML1-C13 (testset)	other	0.00037	0.99963	other
TEL-AML1-C14	other	0.00011	0.99989	other
TEL-AML1-C15	other	0.00024	0.99976	other
TEL-AML1-C16	other	0.00078	0.99922	other
TEL-AML1-C17 (testset)	other	1e-04	0.9999	other
TEL-AML1-C18 (testset)	other	0.00112	0.99888	other
TEL-AML1-C19	other	3e-05	0.99997	other
TEL-AML1-C1	other	1e-05	0.99999	other
TEL-AML1-C20	other	0.00036	0.99964	other
TEL-AML1-C21	other	0.00013	0.99987	other
TEL-AML1-C22	other	5e-05	0.99995	other
TEL-AML1-C23	other	2e-04	0.9998	other
TEL-AML1-C24	other	0.00012	0.99988	other
TEL-AML1-C25 (testset)	other	0.00037	0.99963	other
TEL-AML1-C26	other	0.00072	0.99928	other
TEL-AML1-C27 (testset)	other	0.00029	0.99971	other
TEL-AML1-C28	other	0.00079	0.99921	other
TEL-AML1-C29 (testset)	other	0.0087	0.9913	other
TEL-AML1-C2	other	8e-05	0.99992	other
TEL-AML1-C30	other	0.00282	0.99718	other
TEL-AML1-C31 (testset)	other	0.00044	0.99956	other
TEL-AML1-C32	other	0.00018	0.99982	other
TEL-AML1-C33	other	0.00064	0.99936	other
TEL-AML1-C34 (testset)	other	0.00019	0.99981	other
TEL-AML1-C35	other	0.00022	0.99978	other
TEL-AML1-C36	other	0.00043	0.99957	other
TEL-AML1-C37	other	0.00025	0.99975	other
TEL-AML1-C38 (testset)	other	0.00039	0.99961	other
TEL-AML1-C39	other	0.00023	0.99977	other
TEL-AML1-C3 (testset)	other	0.00013	0.99987	other
TEL-AML1-C40 (testset)	other	0.00325	0.99675	other
TEL-AML1-C41	other	5e-05	0.99995	other
TEL-AML1-C42 (testset)	other	3e-05	0.99997	other
TEL-AML1-C43	other	0.00032	0.99968	other
TEL-AML1-C44 (testset)	other	0.00058	0.99942	other
TEL-AML1-C45	other	5e-05	0.99995	other
TEL-AML1-C46 (testset)	other	0.00055	0.99945	other
TEL-AML1-C47	other	0.00016	0.99984	other
TEL-AML1-C48	other	0.00439	0.99561	other
TEL-AML1-C49	other	4e-05	0.99996	other
TEL-AML1-C4	other	0.00023	0.99977	other
TEL-AML1-C50	other	0.00023	0.99977	other
TEL-AML1-C51	other	0.00016	0.99984	other
TEL-AML1-C52	other	0.00079	0.99921	other
TEL-AML1-C53	other	0.01919	0.98081	other
TEL-AML1-C54	other	0.00026	0.99974	other
TEL-AML1-C55	other	0.02019	0.97981	other
TEL-AML1-C56	other	1e-05	0.99999	other
TEL-AML1-C57 (testset)	other	0.0029	0.9971	other
TEL-AML1-C5 (testset)	other	2e-05	0.99998	other
TEL-AML1-C6	other	0.00018	0.99982	other
TEL-AML1-C7	other	7e-05	0.99993	other
TEL-AML1-C8	other	0	1	other
TEL-AML1-C9 (testset)	other	2e-05	0.99998	other
TEL-AML1-R1	other	0.09868	0.90132	other
TEL-AML1-R2	other	0.00039	0.99961	other
TEL-AML1-R3 (testset)	other	0.00012	0.99988	other