StAM Report: Prediction of E2A-PBX1 (predictive) - beta 0.083, 0.917



Information on Evaluation

Total number of samples: 327
Training samples: 218 ( 18 from E2A-PBX1, 200 from other )
Test samples: 109 ( 9 from E2A-PBX1, 100 from other )
Focus on class: E2A-PBX1
Data frm chip: hgu95av2
Start node: GO:0008150 ( biological_process )


Annotation Information

Chip annotations for: hgu95av2
Chip data package: data package version 1.5.1
Mon May 10 11:12:58 2004
GO data package: GO package version 1.5.1
Mon May 10 11:46:39 2004
Root node chosen: GO:0008150 ( biological_process )
Number of probesets
on the chip:
12625
Probesets annotated
below GO:0008150 :
8679
Number of nodes
with direct annotations:
1359
Total number of nodes: 2204


Information on Cross Validation

Number of samples: 218
Number of classes: 2
Class weights: 'E2A-PBX1': 0.083 'other': 0.917
Class prior: 'E2A-PBX1':0.083 'other':0.917
Shrinkage candidates: 0, 0.019, 0.039, 0.058, 0.078, 0.097, 0.117, 0.136, 0.156, 0.175, 0.195, 0.214, 0.234, 0.253, 0.273, 0.292, 0.312, 0.331, 0.351, 0.37, 0.39, 0.409, 0.429, 0.448, 0.468, 0.487, 0.507, 0.526, 0.546, 0.565


Cross validated performance


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 Root.error.rateRoot.performanceMean.redundancyNodesGenes
000.116052.928012967188
0.01900.115442.929282967188
0.03900.114782.930762967188
0.05800.114032.93252967188
0.07800.113212.933332967188
0.09700.11232.954652927186
0.11700.111292.957642927186
0.13600.110122.959462927186
0.15600.108752.982752867170
0.17500.107192.994092837170
0.19500.105743.051272727097
0.21400.104063.070882687070
0.23400.102233.10352557068
0.25300.100493.148322456983
0.27300.098563.177282406916
0.29200.09643.192222296862
0.31200.093753.197732156650
0.33100.089973.229271776552
0.35100.085813.295061646499
0.3700.081533.302691586449
0.3900.075383.309391506424
0.40900.069323.519451225958
0.42900.057343.678441005204
0.44800.046044.35681734039
0.46800.036385.10568583252
0.48700.02986.61994412812
0.50700.025258.65584332562
0.52600.020078.7892332562
0.54600.0131216.049188680


Information on Model Fit


Fit for D = 0.4287

Number of classes: 2
Class weights: 'E2A-PBX1': 0.083 'other': 0.917
Class prior: 'E2A-PBX1':0.083 'other':0.917
Chosen shrinkage level: 0.429
(by optimizing the root's error rate )
Number of nodes left 100
Number of accessible genes 5204

Shrunken prediction graph

Hover over a node to see its description, click on it to view its detailed results.


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Nodewise evaluation


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Information on Predictions

Number of samples: 327 (27 from E2A-PBX1, 300 from other)
Test samples: 109 (9 from E2A-PBX1, 100 from other)
Classes: E2A-PBX1, other


Illustration of Performance on testdata

Nodewise evaluation


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Prediction image

Hover over a node description to see its ID, click on it to see detailed results.


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Details on Nodes


GO:0008150

biological_process

Biological
Process

Parent node

8 child nodes

Performance on training data

 SensitivitySpecificity
E2A-PBX111
other11

Performance on test data

 SensitivitySpecificity
E2A-PBX10.888891
other10.88889

Predictions

 ClassE2A-PBX1otherPredictionn
BCR-ABL-1other0.005170.99483 other
BCR-ABL-2other0.006020.99398 other
BCR-ABL-3 (testset)other0.003560.99644 other
BCR-ABL-4other0.005140.99486 other
BCR-ABL-5other0.005870.99413 other
BCR-ABL-6other0.00530.9947 other
BCR-ABL-7other0.006470.99353 other
BCR-ABL-8other0.021610.97839 other
BCR-ABL-9other0.011930.98807 other
BCR-ABL-C1other0.009170.99083 other
BCR-ABL-Hyperdip-10other0.005250.99475 other
BCR-ABL-Hyperdip-R5other0.004810.99519 other
BCR-ABL-R1other0.006230.99377 other
BCR-ABL-R2 (testset)other0.006660.99334 other
BCR-ABL-R3other0.006130.99387 other
E2A-PBX1-10E2A-PBX10.913060.08694 E2A-PBX1
E2A-PBX1-11 (testset)E2A-PBX10.79980.2002 E2A-PBX1
E2A-PBX1-12E2A-PBX10.777120.22288 E2A-PBX1
E2A-PBX1-13 (testset)E2A-PBX10.962710.03729 E2A-PBX1
E2A-PBX1-1E2A-PBX10.97430.0257 E2A-PBX1
E2A-PBX1-2E2A-PBX10.867540.13246 E2A-PBX1
E2A-PBX1-3E2A-PBX10.938480.06152 E2A-PBX1
E2A-PBX1-4 (testset)E2A-PBX10.868280.13172 E2A-PBX1
E2A-PBX1-5 (testset)E2A-PBX10.898130.10187 E2A-PBX1
E2A-PBX1-6E2A-PBX10.983480.01652 E2A-PBX1
E2A-PBX1-7E2A-PBX10.796780.20322 E2A-PBX1
E2A-PBX1-8E2A-PBX10.879610.12039 E2A-PBX1
E2A-PBX1-9E2A-PBX10.939990.06001 E2A-PBX1
E2A-PBX1-2M1E2A-PBX10.87170.1283 E2A-PBX1
E2A-PBX1-C10 (testset)E2A-PBX10.92380.0762 E2A-PBX1
E2A-PBX1-C11 (testset)E2A-PBX10.550770.44923 E2A-PBX1
E2A-PBX1-C12E2A-PBX10.911910.08809 E2A-PBX1
E2A-PBX1-C1 (testset)E2A-PBX10.310160.68984 other
E2A-PBX1-C2E2A-PBX10.930010.06999 E2A-PBX1
E2A-PBX1-C3E2A-PBX10.937890.06211 E2A-PBX1
E2A-PBX1-C4 (testset)E2A-PBX10.890660.10934 E2A-PBX1
E2A-PBX1-C5E2A-PBX10.83270.1673 E2A-PBX1
E2A-PBX1-C6E2A-PBX10.895990.10401 E2A-PBX1
E2A-PBX1-C7E2A-PBX10.958370.04163 E2A-PBX1
E2A-PBX1-C8E2A-PBX10.91020.0898 E2A-PBX1
E2A-PBX1-C9 (testset)E2A-PBX10.869770.13023 E2A-PBX1
E2A-PBX1-R1E2A-PBX10.938440.06156 E2A-PBX1
Hyperdip-50-10 (testset)other0.006330.99367 other
Hyperdip-50-11 (testset)other0.005850.99415 other
Hyperdip-50-12other0.009890.99011 other
Hyperdip-50-13 (testset)other0.008990.99101 other
Hyperdip-50-14other0.010.99 other
Hyperdip-50-1 (testset)other0.006030.99397 other
Hyperdip-50-2 (testset)other0.008310.99169 other
Hyperdip-50-3other0.006780.99322 other
Hyperdip-50-4 (testset)other0.012360.98764 other
Hyperdip-50-5other0.010230.98977 other
Hyperdip-50-6other0.006770.99323 other
Hyperdip-50-7other0.015780.98422 other
Hyperdip-50-8 (testset)other0.010320.98968 other
Hyperdip-50-9other0.032260.96774 other
Hyperdip-50-2M1 (testset)other0.006150.99385 other
Hyperdip-50-2M2 (testset)other0.010930.98907 other
Hyperdip-50-C10other0.009530.99047 other
Hyperdip-50-C11other0.006340.99366 other
Hyperdip-50-C12other0.017920.98208 other
Hyperdip-50-C13other0.006890.99311 other
Hyperdip-50-C14other0.01040.9896 other
Hyperdip-50-C15other0.015010.98499 other
Hyperdip-50-C16 (testset)other0.006630.99337 other
Hyperdip-50-C17other0.008020.99198 other
Hyperdip-50-C18other0.006390.99361 other
Hyperdip-50-C19 (testset)other0.013970.98603 other
Hyperdip-50-C1other0.009080.99092 other
Hyperdip-50-C20other0.005220.99478 other
Hyperdip-50-C21other0.008210.99179 other
Hyperdip-50-C22other0.008090.99191 other
Hyperdip-50-C23other0.00710.9929 other
Hyperdip-50-C24 (testset)other0.018390.98161 other
Hyperdip-50-C25other0.012170.98783 other
Hyperdip-50-C26 (testset)other0.014520.98548 other
Hyperdip-50-C27-N (testset)other0.012150.98785 other
Hyperdip-50-C28other0.045540.95446 other
Hyperdip-50-C29other0.009870.99013 other
Hyperdip-50-C2 (testset)other0.011320.98868 other
Hyperdip-50-C30other0.013780.98622 other
Hyperdip-50-C31other0.008680.99132 other
Hyperdip-50-C32 (testset)other0.007950.99205 other
Hyperdip-50-C33other0.045530.95447 other
Hyperdip-50-C34other0.007230.99277 other
Hyperdip-50-C35 (testset)other0.011050.98895 other
Hyperdip-50-C36other0.009630.99037 other
Hyperdip-50-C37other0.00860.9914 other
Hyperdip-50-C38 (testset)other0.01060.9894 other
Hyperdip-50-C39other0.005640.99436 other
Hyperdip-50-C3other0.015440.98456 other
Hyperdip-50-C40 (testset)other0.006640.99336 other
Hyperdip-50-C41other0.009550.99045 other
Hyperdip-50-C42other0.005680.99432 other
Hyperdip-50-C43 (testset)other0.029650.97035 other
Hyperdip-50-C4other0.007890.99211 other
Hyperdip-50-C5 (testset)other0.010580.98942 other
Hyperdip-50-C6other0.006250.99375 other
Hyperdip-50-C7other0.00770.9923 other
Hyperdip-50-C8other0.008130.99187 other
Hyperdip-50-C9other0.009570.99043 other
Hyperdip-50-R1other0.004270.99573 other
Hyperdip-50-R2other0.015380.98462 other
Hyperdip-50-R3other0.043740.95626 other
Hyperdip-50-R4 (testset)other0.005210.99479 other
Hyperdip-50-R5 (testset)other0.00970.9903 other
Hyperdip47-50-1other0.006990.99301 other
Hyperdip47-50-2 (testset)other0.005240.99476 other
Hyperdip47-50-3other0.238480.76152 other
Hyperdip47-50-2M1 (testset)other0.01310.9869 other
Hyperdip47-50-C10other0.009270.99073 other
Hyperdip47-50-C11other0.007470.99253 other
Hyperdip47-50-C12other0.037580.96242 other
Hyperdip47-50-C13 (testset)other0.088370.91163 other
Hyperdip47-50-C14-Nother0.080870.91913 other
Hyperdip47-50-C15 (testset)other0.009010.99099 other
Hyperdip47-50-C16 (testset)other0.017750.98225 other
Hyperdip47-50-C17other0.011990.98801 other
Hyperdip47-50-C18 (testset)other0.027340.97266 other
Hyperdip47-50-C19other0.112540.88746 other
Hyperdip47-50-C1other0.028520.97148 other
Hyperdip47-50-C2other0.017680.98232 other
Hyperdip47-50-C3-Nother0.011630.98837 other
Hyperdip47-50-C4other0.026780.97322 other
Hyperdip47-50-C5 (testset)other0.345990.65401 other
Hyperdip47-50-C6other0.0150.985 other
Hyperdip47-50-C7 (testset)other0.044270.95573 other
Hyperdip47-50-C8other0.005350.99465 other
Hyperdip47-50-C9 (testset)other0.007360.99264 other
Hypodip-1 (testset)other0.004170.99583 other
Hypodip-2 (testset)other0.012330.98767 other
Hypodip-2M1other0.010850.98915 other
Hypodip-C1other0.004980.99502 other
Hypodip-C2other0.019520.98048 other
Hypodip-C3other0.026740.97326 other
Hypodip-C4other0.025350.97465 other
Hypodip-C5other0.017710.98229 other
Hypodip-C6other0.036770.96323 other
MLL-1other0.027590.97241 other
MLL-2other0.026430.97357 other
MLL-3 (testset)other0.012460.98754 other
MLL-4other0.020350.97965 other
MLL-5other0.021530.97847 other
MLL-6other0.015880.98412 other
MLL-7 (testset)other0.013330.98667 other
MLL-8other0.018160.98184 other
MLL-2M1other0.028450.97155 other
MLL-2M2other0.018140.98186 other
MLL-C1other0.035080.96492 other
MLL-C2 (testset)other0.014590.98541 other
MLL-C3 (testset)other0.386080.61392 other
MLL-C4other0.126730.87327 other
MLL-C5other0.056050.94395 other
MLL-C6 (testset)other0.250360.74964 other
MLL-R1other0.046490.95351 other
MLL-R2 (testset)other0.0950.905 other
MLL-R3 (testset)other0.036640.96336 other
MLL-R4 (testset)other0.028160.97184 other
Normal-1other0.038610.96139 other
Normal-2other0.005830.99417 other
Normal-3other0.007090.99291 other
Normal-C1-Nother0.040870.95913 other
Normal-C10other0.015050.98495 other
Normal-C11-N (testset)other0.021440.97856 other
Normal-C12 (testset)other0.023920.97608 other
Normal-C2-Nother0.031980.96802 other
Normal-C3-Nother0.112530.88747 other
Normal-C4-Nother0.047120.95288 other
Normal-C5 (testset)other0.006630.99337 other
Normal-C6other0.009510.99049 other
Normal-C7-Nother0.063130.93687 other
Normal-C8other0.009520.99048 other
Normal-C9 (testset)other0.038740.96126 other
Normal-R1other0.006870.99313 other
Normal-R2-Nother0.009870.99013 other
Normal-R3 (testset)other0.045020.95498 other
Pseudodip-1 (testset)other0.00890.9911 other
Pseudodip-2other0.008460.99154 other
Pseudodip-3other0.039320.96068 other
Pseudodip-4other0.043480.95652 other
Pseudodip-5other0.016120.98388 other
Pseudodip-6other0.029490.97051 other
Pseudodip-7 (testset)other0.009020.99098 other
Pseudodip-8-N (testset)other0.101030.89897 other
Pseudodip-9other0.033120.96688 other
Pseudodip-C10other0.042070.95793 other
Pseudodip-C11other0.006170.99383 other
Pseudodip-C12other0.012160.98784 other
Pseudodip-C13other0.041710.95829 other
Pseudodip-C14 (testset)other0.024070.97593 other
Pseudodip-C15other0.045210.95479 other
Pseudodip-C16-N (testset)other0.013850.98615 other
Pseudodip-C17 (testset)other0.052980.94702 other
Pseudodip-C18other0.01520.9848 other
Pseudodip-C19other0.003670.99633 other
Pseudodip-C1other0.005690.99431 other
Pseudodip-C2-N (testset)other0.084350.91565 other
Pseudodip-C3other0.015110.98489 other
Pseudodip-C4other0.07420.9258 other
Pseudodip-C5 (testset)other0.019450.98055 other
Pseudodip-C6other0.032830.96717 other
Pseudodip-C7 (testset)other0.030140.96986 other
Pseudodip-C8 (testset)other0.226630.77337 other
Pseudodip-C9other0.032770.96723 other
Pseudodip-R1-Nother0.025950.97405 other
T-ALL-10other0.015380.98462 other
T-ALL-1other0.04030.9597 other
T-ALL-2other0.029880.97012 other
T-ALL-3other0.004870.99513 other
T-ALL-4 (testset)other0.012910.98709 other
T-ALL-5other0.015360.98464 other
T-ALL-6other0.013120.98688 other
T-ALL-7 (testset)other0.035810.96419 other
T-ALL-8other0.023030.97697 other
T-ALL-9 (testset)other0.00430.9957 other
T-ALL-2M1other0.009130.99087 other
T-ALL-C10other0.026920.97308 other
T-ALL-C11other0.008490.99151 other
T-ALL-C12other0.008980.99102 other
T-ALL-C13other0.007770.99223 other
T-ALL-C14other0.056770.94323 other
T-ALL-C15 (testset)other0.0050.995 other
T-ALL-C16other0.019760.98024 other
T-ALL-C17other0.006540.99346 other
T-ALL-C18 (testset)other0.005250.99475 other
T-ALL-C19 (testset)other0.041880.95812 other
T-ALL-C1 (testset)other0.016670.98333 other
T-ALL-C20other0.007040.99296 other
T-ALL-C21other0.008150.99185 other
T-ALL-C22other0.010220.98978 other
T-ALL-C23other0.011620.98838 other
T-ALL-C24other0.01260.9874 other
T-ALL-C25other0.010570.98943 other
T-ALL-C26 (testset)other0.0140.986 other
T-ALL-C2 (testset)other0.019890.98011 other
T-ALL-C3other0.009210.99079 other
T-ALL-C4 (testset)other0.014610.98539 other
T-ALL-C5 (testset)other0.004250.99575 other
T-ALL-C6 (testset)other0.017110.98289 other
T-ALL-C7other0.007680.99232 other
T-ALL-C8other0.043570.95643 other
T-ALL-C9other0.011750.98825 other
T-ALL-R1other0.015640.98436 other
T-ALL-R2other0.003960.99604 other
T-ALL-R3other0.009890.99011 other
T-ALL-R4other0.005850.99415 other
T-ALL-R5 (testset)other0.007350.99265 other
T-ALL-R6other0.004110.99589 other
TEL-AML1-10 (testset)other0.006550.99345 other
TEL-AML1-11other0.004350.99565 other
TEL-AML1-12 (testset)other0.010810.98919 other
TEL-AML1-13other0.006390.99361 other
TEL-AML1-14other0.005420.99458 other
TEL-AML1-1 (testset)other0.006410.99359 other
TEL-AML1-2other0.008840.99116 other
TEL-AML1-3 (testset)other0.006450.99355 other
TEL-AML1-4other0.00550.9945 other
TEL-AML1-5other0.027720.97228 other
TEL-AML1-6 (testset)other0.017820.98218 other
TEL-AML1-7 (testset)other0.006960.99304 other
TEL-AML1-8other0.013560.98644 other
TEL-AML1-9other0.008720.99128 other
TEL-AML1-2M1 (testset)other0.021550.97845 other
TEL-AML1-2M2other0.006890.99311 other
TEL-AML1-2M3other0.013220.98678 other
TEL-AML1-2M4 (testset)other0.008160.99184 other
TEL-AML1-2M5other0.005420.99458 other
TEL-AML1-C10 (testset)other0.01910.9809 other
TEL-AML1-C11other0.009010.99099 other
TEL-AML1-C12 (testset)other0.017160.98284 other
TEL-AML1-C13 (testset)other0.009810.99019 other
TEL-AML1-C14other0.01120.9888 other
TEL-AML1-C15other0.013940.98606 other
TEL-AML1-C16other0.011810.98819 other
TEL-AML1-C17 (testset)other0.015820.98418 other
TEL-AML1-C18 (testset)other0.007790.99221 other
TEL-AML1-C19other0.006980.99302 other
TEL-AML1-C1other0.006550.99345 other
TEL-AML1-C20other0.007920.99208 other
TEL-AML1-C21other0.01430.9857 other
TEL-AML1-C22other0.007170.99283 other
TEL-AML1-C23other0.014660.98534 other
TEL-AML1-C24other0.004670.99533 other
TEL-AML1-C25 (testset)other0.01290.9871 other
TEL-AML1-C26other0.004570.99543 other
TEL-AML1-C27 (testset)other0.00860.9914 other
TEL-AML1-C28other0.004310.99569 other
TEL-AML1-C29 (testset)other0.008020.99198 other
TEL-AML1-C2other0.007790.99221 other
TEL-AML1-C30other0.009480.99052 other
TEL-AML1-C31 (testset)other0.024240.97576 other
TEL-AML1-C32other0.013120.98688 other
TEL-AML1-C33other0.00820.9918 other
TEL-AML1-C34 (testset)other0.006060.99394 other
TEL-AML1-C35other0.010260.98974 other
TEL-AML1-C36other0.011120.98888 other
TEL-AML1-C37other0.005370.99463 other
TEL-AML1-C38 (testset)other0.005250.99475 other
TEL-AML1-C39other0.007070.99293 other
TEL-AML1-C3 (testset)other0.008690.99131 other
TEL-AML1-C40 (testset)other0.00940.9906 other
TEL-AML1-C41other0.00870.9913 other
TEL-AML1-C42 (testset)other0.007710.99229 other
TEL-AML1-C43other0.008530.99147 other
TEL-AML1-C44 (testset)other0.007860.99214 other
TEL-AML1-C45other0.011330.98867 other
TEL-AML1-C46 (testset)other0.006040.99396 other
TEL-AML1-C47other0.005580.99442 other
TEL-AML1-C48other0.008770.99123 other
TEL-AML1-C49other0.012390.98761 other
TEL-AML1-C4other0.008340.99166 other
TEL-AML1-C50other0.009530.99047 other
TEL-AML1-C51other0.009860.99014 other
TEL-AML1-C52other0.003890.99611 other
TEL-AML1-C53other0.007360.99264 other
TEL-AML1-C54other0.006980.99302 other
TEL-AML1-C55other0.008470.99153 other
TEL-AML1-C56other0.01140.9886 other
TEL-AML1-C57 (testset)other0.007680.99232 other
TEL-AML1-C5 (testset)other0.006780.99322 other
TEL-AML1-C6other0.006040.99396 other
TEL-AML1-C7other0.007570.99243 other
TEL-AML1-C8other0.008590.99141 other
TEL-AML1-C9 (testset)other0.013960.98604 other
TEL-AML1-R1other0.013380.98662 other
TEL-AML1-R2other0.005370.99463 other
TEL-AML1-R3 (testset)other0.031550.96845 other

 


Generated by StAM on Tue Sep 7 18:21:54 2004