GO:0007267


GO:0007267

cell-cell signaling
(annotated genes)

Biological
Process

Parent node

This leaf node contains 331 genes

The following 63 of these are used in classification:

 SymbolGenenameNORMAL scoreSQUAMOUS score
40367_atBMP2 bone morphogenetic protein 20.7832-0.634
34342_s_atSPP1 secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)-0.75320.6097
1113_atBMP2 bone morphogenetic protein 20.6991-0.566
36105_atCEACAM6 carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)0.6959-0.5634
2092_s_atSPP1 secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)-0.6650.5383
35178_atWIF1 WNT inhibitory factor 10.6597-0.5341
875_g_atCCL2 chemokine (C-C motif) ligand 20.5109-0.4136
34375_atCCL2 chemokine (C-C motif) ligand 20.4694-0.38
39994_atCCR1 chemokine (C-C motif) receptor 10.4407-0.3568
35898_atWISP2 WNT1 inducible signaling pathway protein 20.4395-0.3558
41198_atGRN granulin0.4225-0.342
38124_atMDK midkine (neurite growth-promoting factor 2)-0.42160.3413
577_atMDK midkine (neurite growth-promoting factor 2)-0.40790.3302
615_s_atPTHLH parathyroid hormone-like hormone-0.39690.3213
38489_atHBP17 heparin-binding growth factor binding protein-0.37220.3013
38299_atIL6 interleukin 6 (interferon, beta 2)0.3637-0.2944
589_atSRD5A1 steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)-0.36280.2937
758_atPTGIR prostaglandin I2 (prostacyclin) receptor (IP)0.3535-0.2862
37989_atPTHLH parathyroid hormone-like hormone-0.34930.2828
37231_atDLG7 discs, large homolog 7 (Drosophila)-0.32920.2665
41586_atFGF18 fibroblast growth factor 180.2958-0.2395
32666_atCXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)0.2877-0.2329
40454_atFAT FAT tumor suppressor homolog 1 (Drosophila)-0.28410.23
36958_atZYX zyxin0.2795-0.2262
1380_atFGF7 fibroblast growth factor 7 (keratinocyte growth factor)0.2534-0.2051
35204_atSEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A0.2149-0.1739
40303_atTFAP2C transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)-0.19960.1616
36503_atCCL21 chemokine (C-C motif) ligand 210.1956-0.1583
38374_atTIEG TGFB inducible early growth response0.1933-0.1565
41588_atFGF18 fibroblast growth factor 180.1919-0.1554
34898_atAREG amphiregulin (schwannoma-derived growth factor)0.1879-0.1521
36802_atCD33 CD33 antigen (gp67)0.1777-0.1439
36061_atSEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A0.1734-0.1404
38115_atTUSC2 tumor suppressor candidate 20.1621-0.1312
38487_atSTAB1 stabilin 10.1576-0.1276
224_atTIEG TGFB inducible early growth response0.1573-0.1274
32137_atJAG2 jagged 2-0.15140.1226
32128_atCCL18 chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)0.1494-0.1209
34777_atADM adrenomedullin-0.13540.1096
39325_atEBAF endometrial bleeding associated factor (left-right determination, factor A; transforming growth factor beta superfamily)0.1289-0.1043
37454_atCCL13 chemokine (C-C motif) ligand 130.1279-0.1035
1526_i_atFGF8 fibroblast growth factor 8 (androgen-induced)-0.11790.0954
40686_atNMB neuromedin B-0.11040.0894
1128_s_atCCR1 chemokine (C-C motif) receptor 10.1087-0.088
874_atCCL2 chemokine (C-C motif) ligand 20.105-0.085
725_i_atCSH1 chorionic somatomammotropin hormone 1 (placental lactogen)0.0822-0.0666
218_atIK IK cytokine, down-regulator of HLA II0.0753-0.061
1334_s_atCSF3 colony stimulating factor 3 (granulocyte)0.0685-0.0555
32115_r_atADORA2A adenosine A2a receptor-0.06550.053
160025_atTGFA transforming growth factor, alpha-0.05770.0467
1466_s_atFGF7 fibroblast growth factor 7 (keratinocyte growth factor)0.0544-0.0441
35378_atLHB luteinizing hormone beta polypeptide-0.04060.0329
1577_atAR androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease)0.0392-0.0317
36252_atCTF1 cardiotrophin 10.0391-0.0316
34335_atEFNB2 ephrin-B20.0352-0.0285
32114_s_atADORA2A adenosine A2a receptor0.0295-0.0239
35220_atENPEP glutamyl aminopeptidase (aminopeptidase A)0.0284-0.023
36450_atPYY peptide YY-0.02050.0166
41584_atNUDT3 nudix (nucleoside diphosphate linked moiety X)-type motif 3-0.01120.0091
41290_atNCAM1 neural cell adhesion molecule 10.011-0.0089
793_atPGF placental growth factor, vascular endothelial growth factor-related protein-0.00940.0076
36674_atCCL4 chemokine (C-C motif) ligand 40.0075-0.0061
32126_atFGF7 fibroblast growth factor 7 (keratinocyte growth factor)0.0035-0.0029

Performance on training data

 SensitivitySpecificity
NORMAL11
SQUAMOUS11

Performance on test data

 SensitivitySpecificity
NORMAL11
SQUAMOUS11

Predictions

 ClassNORMALSQUAMOUSPredictionn
CL2001031606AA (testset)SQUAMOUS01 SQUAMOUS
CL2001031620AA (testset)SQUAMOUS01 SQUAMOUS
CL2001031621AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032122AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032129AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032144AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032153AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032207AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032209AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032218AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032222AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032231AA (testset)SQUAMOUS6e-050.99994 SQUAMOUS
CL2001032239AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032240AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032305AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032608AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032627AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032644AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032719AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032732AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032853AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032010AA (testset)NORMAL10 NORMAL
CL2001032041AA (testset)NORMAL10 NORMAL
CL2001032043AA (testset)NORMAL10 NORMAL
CL2001032045AA (testset)NORMAL10 NORMAL
CL2001032046AA (testset)NORMAL10 NORMAL
CL2001032102AA (testset)NORMAL10 NORMAL
CL2001032128AA (testset)NORMAL10 NORMAL
CL2001032147AA (testset)NORMAL10 NORMAL
CL2001032202AA (testset)NORMAL10 NORMAL
CL2001032206AA (testset)NORMAL10 NORMAL
CL2001032220AA (testset)NORMAL10 NORMAL
CL2001032256AA (testset)NORMAL0.998970.00103 NORMAL
CL2001032304AA (testset)NORMAL10 NORMAL
CL2001032718AA (testset)NORMAL10 NORMAL
CL2001032724AA (testset)NORMAL10 NORMAL
CL2001032725AA (testset)NORMAL0.999991e-05 NORMAL
CL2001032727AA (testset)NORMAL10 NORMAL

 


Generated by StAM on Tue Sep 7 18:16:18 2004