GO:0007229


GO:0007229

integrin-mediated signaling pathway
(annotated genes)

Biological
Process

Parent node

This leaf node contains 53 genes

The following 33 of these are used in classification:

 SymbolGenenameNORMAL scoreSQUAMOUS score
40304_atBPAG1 bullous pemphigoid antigen 1, 230/240kDa-0.88760.7185
41266_atITGA6 integrin, alpha 6-0.68390.5537
41005_atITGA8 integrin, alpha 80.6551-0.5303
406_atITGB4 integrin, beta 4-0.59330.4803
32780_atBPAG1 bullous pemphigoid antigen 1, 230/240kDa0.5856-0.4741
35365_atILK integrin-linked kinase0.5654-0.4577
37574_atNEDD9 neural precursor cell expressed, developmentally down-regulated 90.5129-0.4152
36709_atITGAX integrin, alpha X (antigen CD11C (p150), alpha polypeptide)0.4818-0.39
33411_g_atITGA6 integrin, alpha 6-0.48160.3898
120_atITGA1 integrin, alpha 10.4596-0.372
37484_atITGA1 integrin, alpha 10.4399-0.3561
38547_atITGAL integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)0.4263-0.3451
33410_atITGA6 integrin, alpha 6-0.41640.3371
885_g_atITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)0.3906-0.3162
39071_atITGAV integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)-0.36150.2926
37918_atITGB2 integrin, beta 2 (antigen CD18 (p95), lymphocyte function-associated antigen 1; macrophage antigen 1 (mac-1) beta subunit)0.2565-0.2076
34974_atADAMDEC1 ADAM-like, decysin 1-0.24690.1999
39753_atITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide)0.2337-0.1892
36892_atITGA7 integrin, alpha 70.2264-0.1832
884_atITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)0.2089-0.1691
39754_atITGB5 integrin, beta 5-0.19660.1591
41481_atITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)-0.11930.0966
1508_atITGA9 integrin, alpha 90.1182-0.0957
1978_atITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)-0.09590.0776
38533_s_atITGAM integrin, alpha M (complement component receptor 3, alpha; also known as CD11b (p170), macrophage antigen alpha polypeptide)0.0721-0.0583
36117_atPTK2 PTK2 protein tyrosine kinase 2-0.07130.0577
257_atITGAV integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)-0.06470.0523
38746_atITGB4 integrin, beta 4-0.06280.0508
312_s_atPTK2 PTK2 protein tyrosine kinase 2-0.06020.0488
2055_s_atITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)0.0551-0.0446
2032_s_atITGAV integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)-0.04720.0382
2058_s_atITGB5 integrin, beta 5-0.04150.0336
38534_atITGAM integrin, alpha M (complement component receptor 3, alpha; also known as CD11b (p170), macrophage antigen alpha polypeptide)0.0392-0.0317

Performance on training data

 SensitivitySpecificity
NORMAL11
SQUAMOUS11

Performance on test data

 SensitivitySpecificity
NORMAL11
SQUAMOUS11

Predictions

 ClassNORMALSQUAMOUSPredictionn
CL2001031606AA (testset)SQUAMOUS0.002840.99716 SQUAMOUS
CL2001031620AA (testset)SQUAMOUS01 SQUAMOUS
CL2001031621AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032122AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032129AA (testset)SQUAMOUS0.000160.99984 SQUAMOUS
CL2001032144AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032153AA (testset)SQUAMOUS1e-050.99999 SQUAMOUS
CL2001032207AA (testset)SQUAMOUS7e-050.99993 SQUAMOUS
CL2001032209AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032218AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032222AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032231AA (testset)SQUAMOUS0.000860.99914 SQUAMOUS
CL2001032239AA (testset)SQUAMOUS0.208880.79112 SQUAMOUS
CL2001032240AA (testset)SQUAMOUS1e-050.99999 SQUAMOUS
CL2001032305AA (testset)SQUAMOUS0.000630.99937 SQUAMOUS
CL2001032608AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032627AA (testset)SQUAMOUS3e-050.99997 SQUAMOUS
CL2001032644AA (testset)SQUAMOUS1e-050.99999 SQUAMOUS
CL2001032719AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032732AA (testset)SQUAMOUS0.002270.99773 SQUAMOUS
CL2001032853AA (testset)SQUAMOUS0.000240.99976 SQUAMOUS
CL2001032010AA (testset)NORMAL10 NORMAL
CL2001032041AA (testset)NORMAL0.999991e-05 NORMAL
CL2001032043AA (testset)NORMAL0.999991e-05 NORMAL
CL2001032045AA (testset)NORMAL0.999590.00041 NORMAL
CL2001032046AA (testset)NORMAL0.999991e-05 NORMAL
CL2001032102AA (testset)NORMAL10 NORMAL
CL2001032128AA (testset)NORMAL0.999890.00011 NORMAL
CL2001032147AA (testset)NORMAL10 NORMAL
CL2001032202AA (testset)NORMAL10 NORMAL
CL2001032206AA (testset)NORMAL0.999991e-05 NORMAL
CL2001032220AA (testset)NORMAL0.999991e-05 NORMAL
CL2001032256AA (testset)NORMAL0.999430.00057 NORMAL
CL2001032304AA (testset)NORMAL0.999982e-05 NORMAL
CL2001032718AA (testset)NORMAL0.999973e-05 NORMAL
CL2001032724AA (testset)NORMAL0.999790.00021 NORMAL
CL2001032725AA (testset)NORMAL0.999991e-05 NORMAL
CL2001032727AA (testset)NORMAL0.999946e-05 NORMAL

 


Generated by StAM on Tue Sep 7 18:16:17 2004