GO:0007160


GO:0007160

cell-matrix adhesion
(annotated genes)

Biological
Process

Parent node

This leaf node contains 73 genes

The following 42 of these are used in classification:

 SymbolGenenameNORMAL scoreSQUAMOUS score
34342_s_atSPP1 secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)-0.87760.7104
2092_s_atSPP1 secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)-0.79030.6397
41266_atITGA6 integrin, alpha 6-0.69390.5618
41005_atITGA8 integrin, alpha 80.6757-0.547
406_atITGB4 integrin, beta 4-0.60330.4884
35365_atILK integrin-linked kinase0.5809-0.4703
39673_i_atECM2 extracellular matrix protein 2, female organ and adipocyte specific0.5698-0.4613
36709_atITGAX integrin, alpha X (antigen CD11C (p150), alpha polypeptide)0.4936-0.3996
33411_g_atITGA6 integrin, alpha 6-0.49290.3991
120_atITGA1 integrin, alpha 10.4726-0.3826
37484_atITGA1 integrin, alpha 10.4532-0.3669
38547_atITGAL integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)0.4406-0.3566
33410_atITGA6 integrin, alpha 6-0.42620.345
1125_s_atCD44 CD44 antigen (homing function and Indian blood group system)-0.42610.3449
885_g_atITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)0.4013-0.3249
39071_atITGAV integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)-0.37210.3012
39674_r_atECM2 extracellular matrix protein 2, female organ and adipocyte specific0.2638-0.2136
37918_atITGB2 integrin, beta 2 (antigen CD18 (p95), lymphocyte function-associated antigen 1; macrophage antigen 1 (mac-1) beta subunit)0.2629-0.2128
39753_atITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide)0.2425-0.1963
36892_atITGA7 integrin, alpha 70.2339-0.1893
884_atITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)0.2173-0.1759
734_atMUC4 mucin 4, tracheobronchial-0.21670.1754
39754_atITGB5 integrin, beta 5-0.20310.1644
35912_atMUC4 mucin 4, tracheobronchial-0.16610.1345
34098_f_atITGB1BP1 integrin beta 1 binding protein 1-0.14470.1171
1508_atITGA9 integrin, alpha 90.1279-0.1036
41481_atITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)-0.12510.1013
1978_atITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)-0.10240.0829
38120_atPKD2 polycystic kidney disease 2 (autosomal dominant)0.0971-0.0786
2036_s_atCD44 CD44 antigen (homing function and Indian blood group system)-0.08110.0657
38533_s_atITGAM integrin, alpha M (complement component receptor 3, alpha; also known as CD11b (p170), macrophage antigen alpha polypeptide)0.0787-0.0637
31616_r_atCD44 CD44 antigen (homing function and Indian blood group system)0.0763-0.0617
257_atITGAV integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)-0.07210.0583
38746_atITGB4 integrin, beta 4-0.06990.0566
2055_s_atITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)0.0628-0.0508
41790_atGPLD1 glycosylphosphatidylinositol specific phospholipase D1-0.05520.0447
2032_s_atITGAV integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)-0.0550.0445
38534_atITGAM integrin, alpha M (complement component receptor 3, alpha; also known as CD11b (p170), macrophage antigen alpha polypeptide)0.0474-0.0383
2058_s_atITGB5 integrin, beta 5-0.04630.0375
34258_atMKLN1 muskelin 1, intracellular mediator containing kelch motifs-0.04580.0371
1126_s_atCD44 CD44 antigen (homing function and Indian blood group system)-0.01410.0115
34170_s_atPKD2 polycystic kidney disease 2 (autosomal dominant)0.0052-0.0042

Performance on training data

 SensitivitySpecificity
NORMAL11
SQUAMOUS11

Performance on test data

 SensitivitySpecificity
NORMAL11
SQUAMOUS11

Predictions

 ClassNORMALSQUAMOUSPredictionn
CL2001031606AA (testset)SQUAMOUS0.001010.99899 SQUAMOUS
CL2001031620AA (testset)SQUAMOUS5e-050.99995 SQUAMOUS
CL2001031621AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032122AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032129AA (testset)SQUAMOUS8e-050.99992 SQUAMOUS
CL2001032144AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032153AA (testset)SQUAMOUS0.000170.99983 SQUAMOUS
CL2001032207AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032209AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032218AA (testset)SQUAMOUS0.000780.99922 SQUAMOUS
CL2001032222AA (testset)SQUAMOUS7e-050.99993 SQUAMOUS
CL2001032231AA (testset)SQUAMOUS0.000580.99942 SQUAMOUS
CL2001032239AA (testset)SQUAMOUS0.00120.9988 SQUAMOUS
CL2001032240AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032305AA (testset)SQUAMOUS3e-050.99997 SQUAMOUS
CL2001032608AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032627AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032644AA (testset)SQUAMOUS1e-050.99999 SQUAMOUS
CL2001032719AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032732AA (testset)SQUAMOUS0.000170.99983 SQUAMOUS
CL2001032853AA (testset)SQUAMOUS2e-050.99998 SQUAMOUS
CL2001032010AA (testset)NORMAL10 NORMAL
CL2001032041AA (testset)NORMAL0.999982e-05 NORMAL
CL2001032043AA (testset)NORMAL10 NORMAL
CL2001032045AA (testset)NORMAL0.999991e-05 NORMAL
CL2001032046AA (testset)NORMAL10 NORMAL
CL2001032102AA (testset)NORMAL10 NORMAL
CL2001032128AA (testset)NORMAL10 NORMAL
CL2001032147AA (testset)NORMAL10 NORMAL
CL2001032202AA (testset)NORMAL10 NORMAL
CL2001032206AA (testset)NORMAL10 NORMAL
CL2001032220AA (testset)NORMAL10 NORMAL
CL2001032256AA (testset)NORMAL0.959250.04075 NORMAL
CL2001032304AA (testset)NORMAL0.998730.00127 NORMAL
CL2001032718AA (testset)NORMAL10 NORMAL
CL2001032724AA (testset)NORMAL0.999982e-05 NORMAL
CL2001032725AA (testset)NORMAL10 NORMAL
CL2001032727AA (testset)NORMAL0.999991e-05 NORMAL

 


Generated by StAM on Tue Sep 7 18:16:18 2004