GO:0006816


GO:0006816

calcium ion transport
(annotated genes)

Biological
Process

Parent nodes

This leaf node contains 61 genes

The following 53 of these are used in classification:

 SymbolGenenameNORMAL scoreSQUAMOUS score
755_atITPR1 inositol 1,4,5-triphosphate receptor, type 10.827-0.6695
36365_atTRPC6 transient receptor potential cation channel, subfamily C, member 60.6915-0.5598
2039_s_atFYN FYN oncogene related to SRC, FGR, YES0.6728-0.5446
40480_s_atFYN FYN oncogene related to SRC, FGR, YES0.6633-0.5369
32778_atITPR1 inositol 1,4,5-triphosphate receptor, type 10.6601-0.5343
38734_atPLN phospholamban0.6428-0.5204
40479_atFYN FYN oncogene related to SRC, FGR, YES0.6066-0.491
40914_s_atATP2B4 ATPase, Ca++ transporting, plasma membrane 40.4807-0.3892
40913_atATP2B4 ATPase, Ca++ transporting, plasma membrane 40.4748-0.3843
39276_g_atCACNA1D calcium channel, voltage-dependent, L type, alpha 1D subunit0.4516-0.3656
39275_atCACNA1D calcium channel, voltage-dependent, L type, alpha 1D subunit0.4372-0.3539
39124_r_atTRPC1 transient receptor potential cation channel, subfamily C, member 10.4155-0.3364
40298_atKIAA0703 KIAA0703 gene product0.3692-0.2988
32456_s_atATP2B3 ATPase, Ca++ transporting, plasma membrane 30.2889-0.2339
38684_atATP2C1 ATPase, Ca++ transporting, type 2C, member 1-0.28460.2304
39646_atCACNB2 calcium channel, voltage-dependent, beta 2 subunit0.2673-0.2164
40481_r_atFYN FYN oncogene related to SRC, FGR, YES0.2615-0.2117
39647_s_atCACNB2 calcium channel, voltage-dependent, beta 2 subunit0.2549-0.2064
39123_s_atTRPC1 transient receptor potential cation channel, subfamily C, member 10.2528-0.2047
36806_atTRPV6 transient receptor potential cation channel, subfamily V, member 60.2493-0.2018
38604_atNPY neuropeptide Y0.2418-0.1957
37529_atCACNA1H calcium channel, voltage-dependent, alpha 1H subunit0.2299-0.1861
33064_atCACNG1 calcium channel, voltage-dependent, gamma subunit 10.2235-0.181
37990_atRYR1 ryanodine receptor 1 (skeletal)-0.20350.1647
32779_s_atITPR1 inositol 1,4,5-triphosphate receptor, type 10.1934-0.1566
33626_atCACNA1E calcium channel, voltage-dependent, alpha 1E subunit0.191-0.1546
38539_atSLC24A1 solute carrier family 24 (sodium/potassium/calcium exchanger), member 10.19-0.1538
37053_atATP2B2 ATPase, Ca++ transporting, plasma membrane 20.1776-0.1437
36764_atCACNG3 calcium channel, voltage-dependent, gamma subunit 3-0.16840.1363
38263_atRYR2 ryanodine receptor 2 (cardiac)0.1642-0.1329
35584_s_atCACNA1F calcium channel, voltage-dependent, alpha 1F subunit-0.14760.1195
771_s_atCD7 CD7 antigen (p41)0.1349-0.1092
33839_atITPR2 inositol 1,4,5-triphosphate receptor, type 20.1309-0.1059
37823_atCCL8 chemokine (C-C motif) ligand 80.1288-0.1043
38002_s_atCACNA1C calcium channel, voltage-dependent, L type, alpha 1C subunit0.1195-0.0967
41028_atRYR3 ryanodine receptor 3-0.11660.0944
37661_atATP2B1 ATPase, Ca++ transporting, plasma membrane 1-0.11590.0938
33622_atCACNA1C calcium channel, voltage-dependent, L type, alpha 1C subunit-0.10570.0855
39915_atTRPM2 transient receptor potential cation channel, subfamily M, member 20.1026-0.083
31993_f_atCACNB2 calcium channel, voltage-dependent, beta 2 subunit-0.09590.0776
756_atITPR2 inositol 1,4,5-triphosphate receptor, type 20.0818-0.0662
34188_atATP2B1 ATPase, Ca++ transporting, plasma membrane 1-0.07040.057
34726_atCACNB3 calcium channel, voltage-dependent, beta 3 subunit-0.06950.0563
39125_atTRPC1 transient receptor potential cation channel, subfamily C, member 1-0.05650.0457
33624_atCACNA1E calcium channel, voltage-dependent, alpha 1E subunit-0.04960.0402
35592_atSLC8A2 solute carrier family 8 (sodium-calcium exchanger), member 2-0.04860.0393
34984_atTRPC3 transient receptor potential cation channel, subfamily C, member 30.0482-0.039
33625_g_atCACNA1E calcium channel, voltage-dependent, alpha 1E subunit0.0385-0.0312
37343_atITPR3 inositol 1,4,5-triphosphate receptor, type 3-0.03710.03
38001_atCACNA1C calcium channel, voltage-dependent, L type, alpha 1C subunit0.0274-0.0222
34915_atSLC8A1 solute carrier family 8 (sodium/calcium exchanger), member 10.0235-0.019
33623_g_atCACNA1C calcium channel, voltage-dependent, L type, alpha 1C subunit0.0149-0.012
182_atITPR3 inositol 1,4,5-triphosphate receptor, type 30.0037-0.003

Performance on training data

 SensitivitySpecificity
NORMAL0.941181
SQUAMOUS10.94118

Performance on test data

 SensitivitySpecificity
NORMAL0.941181
SQUAMOUS10.94118

Predictions

 ClassNORMALSQUAMOUSPredictionn
CL2001031606AA (testset)SQUAMOUS01 SQUAMOUS
CL2001031620AA (testset)SQUAMOUS0.000150.99985 SQUAMOUS
CL2001031621AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032122AA (testset)SQUAMOUS3e-050.99997 SQUAMOUS
CL2001032129AA (testset)SQUAMOUS0.000630.99937 SQUAMOUS
CL2001032144AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032153AA (testset)SQUAMOUS0.016290.98371 SQUAMOUS
CL2001032207AA (testset)SQUAMOUS1e-050.99999 SQUAMOUS
CL2001032209AA (testset)SQUAMOUS1e-050.99999 SQUAMOUS
CL2001032218AA (testset)SQUAMOUS1e-040.9999 SQUAMOUS
CL2001032222AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032231AA (testset)SQUAMOUS0.02980.9702 SQUAMOUS
CL2001032239AA (testset)SQUAMOUS0.046530.95347 SQUAMOUS
CL2001032240AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032305AA (testset)SQUAMOUS0.003050.99695 SQUAMOUS
CL2001032608AA (testset)SQUAMOUS0.000170.99983 SQUAMOUS
CL2001032627AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032644AA (testset)SQUAMOUS0.000150.99985 SQUAMOUS
CL2001032719AA (testset)SQUAMOUS0.00350.9965 SQUAMOUS
CL2001032732AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032853AA (testset)SQUAMOUS4e-050.99996 SQUAMOUS
CL2001032010AA (testset)NORMAL0.998770.00123 NORMAL
CL2001032041AA (testset)NORMAL0.999870.00013 NORMAL
CL2001032043AA (testset)NORMAL0.999991e-05 NORMAL
CL2001032045AA (testset)NORMAL0.999991e-05 NORMAL
CL2001032046AA (testset)NORMAL0.999928e-05 NORMAL
CL2001032102AA (testset)NORMAL0.999880.00012 NORMAL
CL2001032128AA (testset)NORMAL0.999991e-05 NORMAL
CL2001032147AA (testset)NORMAL0.999991e-05 NORMAL
CL2001032202AA (testset)NORMAL0.999973e-05 NORMAL
CL2001032206AA (testset)NORMAL0.999991e-05 NORMAL
CL2001032220AA (testset)NORMAL10 NORMAL
CL2001032256AA (testset)NORMAL10 NORMAL
CL2001032304AA (testset)NORMAL0.196960.80304 SQUAMOUS
CL2001032718AA (testset)NORMAL10 NORMAL
CL2001032724AA (testset)NORMAL0.825660.17434 NORMAL
CL2001032725AA (testset)NORMAL0.999560.00044 NORMAL
CL2001032727AA (testset)NORMAL0.999964e-05 NORMAL

 


Generated by StAM on Tue Sep 7 18:16:14 2004