GO:0006730

GO:0006730

one-carbon compound metabolism (annotated genes)

Biological Process

Parent node

GO:0006730	one-carbon compound metabolism

This leaf node contains 25 genes

The following 6 of these are used in classification:

	Symbol	Genename	NORMAL score	SQUAMOUS score
40739_at	CA4	carbonic anhydrase IV	0.7101	-0.5749
36066_at	KIAA0828	KIAA0828 protein	0.4486	-0.3631
40074_at	MTHFD2	methylene tetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	-0.4188	0.339
36178_at	SHMT2	serine hydroxymethyltransferase 2 (mitochondrial)	-0.2198	0.1779
40821_at	AHCY	S-adenosylhomocysteine hydrolase	-0.1974	0.1598
36454_at	CA12	carbonic anhydrase XII	-0.109	0.0883

Performance on training data

• Error rate: 0
• Performance: 0.08346
• Redundancy: 3.52644

	Sensitivity	Specificity
NORMAL	1	1
SQUAMOUS	1	1

Performance on test data

• Error rate: 0
• Performance: 0.08346
• Redundancy: 3.62264

	Sensitivity	Specificity
NORMAL	1	1
SQUAMOUS	1	1

Predictions

	Class	NORMAL	SQUAMOUS	Predictionn
CL2001031606AA (testset)	SQUAMOUS	0.0013	0.9987	SQUAMOUS
CL2001031620AA (testset)	SQUAMOUS	0.09105	0.90895	SQUAMOUS
CL2001031621AA (testset)	SQUAMOUS	0.04378	0.95622	SQUAMOUS
CL2001032122AA (testset)	SQUAMOUS	0.03039	0.96961	SQUAMOUS
CL2001032129AA (testset)	SQUAMOUS	0.01087	0.98913	SQUAMOUS
CL2001032144AA (testset)	SQUAMOUS	0.02202	0.97798	SQUAMOUS
CL2001032153AA (testset)	SQUAMOUS	0.01611	0.98389	SQUAMOUS
CL2001032207AA (testset)	SQUAMOUS	0.02016	0.97984	SQUAMOUS
CL2001032209AA (testset)	SQUAMOUS	0.00543	0.99457	SQUAMOUS
CL2001032218AA (testset)	SQUAMOUS	0.01601	0.98399	SQUAMOUS
CL2001032222AA (testset)	SQUAMOUS	0.01576	0.98424	SQUAMOUS
CL2001032231AA (testset)	SQUAMOUS	0.14539	0.85461	SQUAMOUS
CL2001032239AA (testset)	SQUAMOUS	0.01289	0.98711	SQUAMOUS
CL2001032240AA (testset)	SQUAMOUS	0.02364	0.97636	SQUAMOUS
CL2001032305AA (testset)	SQUAMOUS	0.04109	0.95891	SQUAMOUS
CL2001032608AA (testset)	SQUAMOUS	0.08561	0.91439	SQUAMOUS
CL2001032627AA (testset)	SQUAMOUS	0.00286	0.99714	SQUAMOUS
CL2001032644AA (testset)	SQUAMOUS	0.08103	0.91897	SQUAMOUS
CL2001032719AA (testset)	SQUAMOUS	0.06679	0.93321	SQUAMOUS
CL2001032732AA (testset)	SQUAMOUS	0.0065	0.9935	SQUAMOUS
CL2001032853AA (testset)	SQUAMOUS	0.01136	0.98864	SQUAMOUS
CL2001032010AA (testset)	NORMAL	0.90526	0.09474	NORMAL
CL2001032041AA (testset)	NORMAL	0.95852	0.04148	NORMAL
CL2001032043AA (testset)	NORMAL	0.99958	0.00042	NORMAL
CL2001032045AA (testset)	NORMAL	0.97493	0.02507	NORMAL
CL2001032046AA (testset)	NORMAL	0.99175	0.00825	NORMAL
CL2001032102AA (testset)	NORMAL	0.99841	0.00159	NORMAL
CL2001032128AA (testset)	NORMAL	0.86336	0.13664	NORMAL
CL2001032147AA (testset)	NORMAL	0.97709	0.02291	NORMAL
CL2001032202AA (testset)	NORMAL	0.98717	0.01283	NORMAL
CL2001032206AA (testset)	NORMAL	0.66345	0.33655	NORMAL
CL2001032220AA (testset)	NORMAL	0.99754	0.00246	NORMAL
CL2001032256AA (testset)	NORMAL	0.90264	0.09736	NORMAL
CL2001032304AA (testset)	NORMAL	0.6208	0.3792	NORMAL
CL2001032718AA (testset)	NORMAL	0.99905	0.00095	NORMAL
CL2001032724AA (testset)	NORMAL	0.96201	0.03799	NORMAL
CL2001032725AA (testset)	NORMAL	0.98784	0.01216	NORMAL
CL2001032727AA (testset)	NORMAL	0.9898	0.0102	NORMAL