GO:0006350


GO:0006350

transcription
(annotated genes)

Biological
Process

Parent node

This leaf node contains 87 genes

The following 77 of these are used in classification:

 SymbolGenenameNORMAL scoreSQUAMOUS score
280_g_atNR4A1 nuclear receptor subfamily 4, group A, member 11.0998-0.8903
279_atNR4A1 nuclear receptor subfamily 4, group A, member 11.0852-0.8785
1248_atPOLR2H polymerase (RNA) II (DNA directed) polypeptide H-1.03390.837
35631_atPOLR2H polymerase (RNA) II (DNA directed) polypeptide H-0.99370.8044
36186_atRNPS1 RNA binding protein S1, serine-rich domain-0.70760.5728
41606_atDRG1 developmentally regulated GTP binding protein 1-0.69230.5605
40124_atRUVBL1 RuvB-like 1 (E. coli)-0.59440.4812
36171_atPC4 activated RNA polymerase II transcription cofactor 4-0.57240.4634
34855_atPAPOLA poly(A) polymerase alpha-0.52460.4247
1486_atPOLR2J polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa-0.51940.4205
1073_atTCEA1 transcription elongation factor A (SII), 1-0.5110.4137
34828_atPOLR2I polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa-0.5110.4136
40816_atPWP1 nuclear phosphoprotein similar to S. cerevisiae PWP1-0.50930.4123
39438_atCREBL2 cAMP responsive element binding protein-like 20.4964-0.4018
38296_atUSP49 ubiquitin specific protease 49-0.470.3805
32600_atPOLR2C polymerase (RNA) II (DNA directed) polypeptide C, 33kDa0.4358-0.3528
33726_atPOLR2D polymerase (RNA) II (DNA directed) polypeptide D-0.43570.3527
32621_atDR1 down-regulator of transcription 1, TBP-binding (negative cofactor 2)-0.42560.3446
39747_atPOLR2G polymerase (RNA) II (DNA directed) polypeptide G-0.41350.3347
36460_atPOLR1C polymerase (RNA) I polypeptide C, 30kDa-0.40410.3271
35758_atRUVBL2 RuvB-like 2 (E. coli)-0.36950.2991
35114_atNR1I2 nuclear receptor subfamily 1, group I, member 20.3301-0.2673
211_atDR1 down-regulator of transcription 1, TBP-binding (negative cofactor 2)-0.30620.2479
38589_i_atPTMA prothymosin, alpha (gene sequence 28)-0.29740.2408
39746_atPOLR2B polymerase (RNA) II (DNA directed) polypeptide B, 140kDa-0.29490.2387
40791_atPOLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa-0.28490.2307
32261_atBAZ1B bromodomain adjacent to zinc finger domain, 1B-0.27570.2232
32265_atNR4A1 nuclear receptor subfamily 4, group A, member 10.2753-0.2228
36118_atNCOA1 nuclear receptor coactivator 10.2743-0.222
34810_atPOLR2C polymerase (RNA) II (DNA directed) polypeptide C, 33kDa-0.26720.2163
32049_f_atTCEB3 transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)0.253-0.2048
484_atNCOA1 nuclear receptor coactivator 10.25-0.2024
503_atPOLR2L polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa0.2428-0.1966
40777_atCTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa0.232-0.1878
37094_atXRCC3 X-ray repair complementing defective repair in Chinese hamster cells 3-0.23190.1878
35841_atPOLR2L polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa0.2218-0.1796
35559_atRORC RAR-related orphan receptor C0.2202-0.1782
38519_atNR1H4 nuclear receptor subfamily 1, group H, member 40.2083-0.1686
391_atPPP5C protein phosphatase 5, catalytic subunit-0.19970.1616
38590_r_atPTMA prothymosin, alpha (gene sequence 28)-0.18840.1526
41332_atPOLR2E polymerase (RNA) II (DNA directed) polypeptide E, 25kDa-0.17910.145
704_atNFIA nuclear factor I/A0.1699-0.1376
40088_atNRIP1 nuclear receptor interacting protein 1-0.15620.1265
32050_r_atTCEB3 transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)0.1557-0.1261
37809_atHOXA9 homeo box A9-0.15110.1223
38055_atPOLR2J2 DNA directed RNA polymerase II polypeptide J-related gene-0.14770.1195
35273_atMMS19L MMS19-like (MET18 homolog, S. cerevisiae)0.1453-0.1176
37152_atPPARD peroxisome proliferative activated receptor, delta-0.14240.1153
34419_atRAD51L1 RAD51-like 1 (S. cerevisiae)-0.13890.1124
35865_atNR5A2 nuclear receptor subfamily 5, group A, member 20.1283-0.1039
41065_atNFKBIB nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta-0.12690.1027
33381_atNCOA3 nuclear receptor coactivator 3-0.11790.0954
37810_atHOXA9 homeo box A9-0.11350.0919
39201_r_atCIP29 cytokine induced protein 29 kDa0.1093-0.0884
41496_atZF HCF-binding transcription factor Zhangfei-0.10280.0832
41441_atTBP TATA box binding protein-0.09650.0782
34854_atPOLR2C polymerase (RNA) II (DNA directed) polypeptide C, 33kDa-0.09420.0762
745_atTCEA2 transcription elongation factor A (SII), 20.0929-0.0752
392_g_atPPP5C protein phosphatase 5, catalytic subunit-0.0920.0744
36244_atZNF239 zinc finger protein 239-0.08430.0683
41702_r_atPOLR3F polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa-0.07140.0578
39766_r_atPOLR2K polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa0.0618-0.0501
603_atNR2C1 nuclear receptor subfamily 2, group C, member 10.0593-0.048
40208_atCIP29 cytokine induced protein 29 kDa0.0535-0.0433
1594_atPOLR2C polymerase (RNA) II (DNA directed) polypeptide C, 33kDa-0.04960.0402
34241_atGATA4 GATA binding protein 4-0.04130.0335
141_s_atBRF1 BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)0.0363-0.0294
639_s_atTCEB3 transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)-0.03550.0288
1681_atESR1 estrogen receptor 1-0.0340.0275
413_atHOXD9 homeo box D9-0.03280.0265
1407_g_atNR2C1 nuclear receptor subfamily 2, group C, member 1-0.03240.0262
32550_r_atCEBPA CCAAT/enhancer binding protein (C/EBP), alpha0.024-0.0195
36882_atHOXD9 homeo box D9-0.02110.0171
32045_atDATF1 death associated transcription factor 10.0182-0.0148
582_g_atNR2C1 nuclear receptor subfamily 2, group C, member 10.0127-0.0103
39200_s_atCIP29 cytokine induced protein 29 kDa-0.00990.008
1893_s_atESR1 estrogen receptor 10.0058-0.0047

Performance on training data

 SensitivitySpecificity
NORMAL11
SQUAMOUS11

Performance on test data

 SensitivitySpecificity
NORMAL11
SQUAMOUS11

Predictions

 ClassNORMALSQUAMOUSPredictionn
CL2001031606AA (testset)SQUAMOUS01 SQUAMOUS
CL2001031620AA (testset)SQUAMOUS01 SQUAMOUS
CL2001031621AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032122AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032129AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032144AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032153AA (testset)SQUAMOUS0.028470.97153 SQUAMOUS
CL2001032207AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032209AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032218AA (testset)SQUAMOUS1e-040.9999 SQUAMOUS
CL2001032222AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032231AA (testset)SQUAMOUS0.207980.79202 SQUAMOUS
CL2001032239AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032240AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032305AA (testset)SQUAMOUS0.000120.99988 SQUAMOUS
CL2001032608AA (testset)SQUAMOUS2e-050.99998 SQUAMOUS
CL2001032627AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032644AA (testset)SQUAMOUS7e-050.99993 SQUAMOUS
CL2001032719AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032732AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032853AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032010AA (testset)NORMAL0.999982e-05 NORMAL
CL2001032041AA (testset)NORMAL10 NORMAL
CL2001032043AA (testset)NORMAL0.999991e-05 NORMAL
CL2001032045AA (testset)NORMAL10 NORMAL
CL2001032046AA (testset)NORMAL10 NORMAL
CL2001032102AA (testset)NORMAL10 NORMAL
CL2001032128AA (testset)NORMAL10 NORMAL
CL2001032147AA (testset)NORMAL10 NORMAL
CL2001032202AA (testset)NORMAL10 NORMAL
CL2001032206AA (testset)NORMAL10 NORMAL
CL2001032220AA (testset)NORMAL10 NORMAL
CL2001032256AA (testset)NORMAL10 NORMAL
CL2001032304AA (testset)NORMAL0.999660.00034 NORMAL
CL2001032718AA (testset)NORMAL10 NORMAL
CL2001032724AA (testset)NORMAL10 NORMAL
CL2001032725AA (testset)NORMAL10 NORMAL
CL2001032727AA (testset)NORMAL10 NORMAL

 


Generated by StAM on Tue Sep 7 18:16:10 2004