GO:0006091


GO:0006091

energy pathways
(annotated genes)

Biological
Process

Parent node

This leaf node contains 85 genes

The following 36 of these are used in classification:

 SymbolGenenameNORMAL scoreSQUAMOUS score
35164_atWFS1 Wolfram syndrome 1 (wolframin)0.7584-0.6139
37104_atPPARG peroxisome proliferative activated receptor, gamma0.7026-0.5688
32573_atCOX6A1 cytochrome c oxidase subunit VIa polypeptide 1-0.55910.4526
36668_atDIA1 diaphorase (NADH) (cytochrome b-5 reductase)0.4802-0.3887
36417_s_atACAA1 acetyl-Coenzyme A acyltransferase 1 (peroxisomal 3-oxoacyl-Coenzyme A thiolase)0.4667-0.3778
34811_atATP5G3 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3-0.46480.3763
35638_atCBFA2T1 core-binding factor, runt domain, alpha subunit 2; translocated to, 1; cyclin D-related0.432-0.3497
40415_atACAA1 acetyl-Coenzyme A acyltransferase 1 (peroxisomal 3-oxoacyl-Coenzyme A thiolase)0.3422-0.277
31503_atATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide-0.32890.2662
41206_r_atCOX6A1 cytochrome c oxidase subunit VIa polypeptide 1-0.28890.2339
36163_atDLD dihydrolipoamide dehydrogenase (E3 component of pyruvate dehydrogenase complex, 2-oxo-glutarate complex, branched chain keto acid dehydrogenase complex)-0.25260.2045
38080_atCOX8 cytochrome c oxidase subunit VIII-0.23220.1879
36165_atCOX6C cytochrome c oxidase subunit VIc-0.22910.1855
39027_atCOX4I1 cytochrome c oxidase subunit IV isoform 1-0.22380.1812
36169_atNDUFA1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa-0.19890.161
40470_atOGDH oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)0.1989-0.161
36480_atPHKA2 phosphorylase kinase, alpha 2 (liver)-0.18770.1519
37925_r_atAPOM apolipoprotein M0.1555-0.1259
39291_atPHKA1 phosphorylase kinase, alpha 1 (muscle)-0.14460.1171
37675_atSLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3-0.13270.1074
32822_atSLC25A4 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 40.109-0.0882
37329_atNDUFV1 NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa-0.09860.0798
36893_atFDX1 ferredoxin 10.0916-0.0741
39408_atACADS acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain0.089-0.072
160044_g_atACO2 aconitase 2, mitochondrial-0.08670.0702
40657_r_atACDC adipocyte, C1Q and collagen domain containing0.0752-0.0608
35640_atCBFA2T1 core-binding factor, runt domain, alpha subunit 2; translocated to, 1; cyclin D-related0.0696-0.0563
36107_atATP5J ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6-0.06560.0531
34422_r_atUCP3 uncoupling protein 3 (mitochondrial, proton carrier)0.0645-0.0522
34332_atGNPDA1 glucosamine-6-phosphate deaminase 1-0.06340.0513
40673_atACADSB acyl-Coenzyme A dehydrogenase, short/branched chain-0.06110.0495
36986_atHMGCL 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria)-0.05960.0482
35590_s_atGIPR gastric inhibitory polypeptide receptor-0.05890.0477
37016_atECHS1 enoyl Coenzyme A hydratase, short chain, 1, mitochondrial-0.03110.0251
36405_s_atGLP1R glucagon-like peptide 1 receptor0.0255-0.0207
41722_atNNT nicotinamide nucleotide transhydrogenase-0.02430.0197

Performance on training data

 SensitivitySpecificity
NORMAL11
SQUAMOUS11

Performance on test data

 SensitivitySpecificity
NORMAL11
SQUAMOUS11

Predictions

 ClassNORMALSQUAMOUSPredictionn
CL2001031606AA (testset)SQUAMOUS01 SQUAMOUS
CL2001031620AA (testset)SQUAMOUS0.000860.99914 SQUAMOUS
CL2001031621AA (testset)SQUAMOUS0.000520.99948 SQUAMOUS
CL2001032122AA (testset)SQUAMOUS2e-050.99998 SQUAMOUS
CL2001032129AA (testset)SQUAMOUS4e-050.99996 SQUAMOUS
CL2001032144AA (testset)SQUAMOUS1e-050.99999 SQUAMOUS
CL2001032153AA (testset)SQUAMOUS0.000970.99903 SQUAMOUS
CL2001032207AA (testset)SQUAMOUS2e-050.99998 SQUAMOUS
CL2001032209AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032218AA (testset)SQUAMOUS0.002370.99763 SQUAMOUS
CL2001032222AA (testset)SQUAMOUS1e-050.99999 SQUAMOUS
CL2001032231AA (testset)SQUAMOUS0.114760.88524 SQUAMOUS
CL2001032239AA (testset)SQUAMOUS0.007630.99237 SQUAMOUS
CL2001032240AA (testset)SQUAMOUS0.02320.9768 SQUAMOUS
CL2001032305AA (testset)SQUAMOUS0.001480.99852 SQUAMOUS
CL2001032608AA (testset)SQUAMOUS0.086210.91379 SQUAMOUS
CL2001032627AA (testset)SQUAMOUS0.002190.99781 SQUAMOUS
CL2001032644AA (testset)SQUAMOUS3e-050.99997 SQUAMOUS
CL2001032719AA (testset)SQUAMOUS7e-040.9993 SQUAMOUS
CL2001032732AA (testset)SQUAMOUS0.011710.98829 SQUAMOUS
CL2001032853AA (testset)SQUAMOUS0.020570.97943 SQUAMOUS
CL2001032010AA (testset)NORMAL0.999928e-05 NORMAL
CL2001032041AA (testset)NORMAL0.998850.00115 NORMAL
CL2001032043AA (testset)NORMAL0.999937e-05 NORMAL
CL2001032045AA (testset)NORMAL0.999955e-05 NORMAL
CL2001032046AA (testset)NORMAL0.999860.00014 NORMAL
CL2001032102AA (testset)NORMAL0.999660.00034 NORMAL
CL2001032128AA (testset)NORMAL0.999660.00034 NORMAL
CL2001032147AA (testset)NORMAL0.999220.00078 NORMAL
CL2001032202AA (testset)NORMAL0.999955e-05 NORMAL
CL2001032206AA (testset)NORMAL0.998240.00176 NORMAL
CL2001032220AA (testset)NORMAL0.999991e-05 NORMAL
CL2001032256AA (testset)NORMAL0.865690.13431 NORMAL
CL2001032304AA (testset)NORMAL0.998670.00133 NORMAL
CL2001032718AA (testset)NORMAL0.998520.00148 NORMAL
CL2001032724AA (testset)NORMAL0.998750.00125 NORMAL
CL2001032725AA (testset)NORMAL0.999991e-05 NORMAL
CL2001032727AA (testset)NORMAL0.999937e-05 NORMAL

 


Generated by StAM on Tue Sep 7 18:16:11 2004