GO:0007267


GO:0007267

cell-cell signaling
(annotated genes)

Biological
Process

Parent node

This leaf node contains 331 genes

The following 38 of these are used in classification:

 SymbolGenenameNORMAL scoreSQUAMOUS score
40367_atBMP2 bone morphogenetic protein 20.8953-0.7035
1113_atBMP2 bone morphogenetic protein 20.8006-0.629
35178_atWIF1 WNT inhibitory factor 10.6038-0.4744
34342_s_atSPP1 secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)-0.54890.4313
36105_atCEACAM6 carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)0.5273-0.4143
2092_s_atSPP1 secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)-0.4840.3803
35898_atWISP2 WNT1 inducible signaling pathway protein 20.4414-0.3468
38489_atHBP17 heparin-binding growth factor binding protein-0.35950.2825
875_g_atCCL2 chemokine (C-C motif) ligand 20.347-0.2727
38299_atIL6 interleukin 6 (interferon, beta 2)0.3419-0.2686
39994_atCCR1 chemokine (C-C motif) receptor 10.331-0.2601
34375_atCCL2 chemokine (C-C motif) ligand 20.292-0.2294
758_atPTGIR prostaglandin I2 (prostacyclin) receptor (IP)0.29-0.2279
36061_atSEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A0.2767-0.2174
38124_atMDK midkine (neurite growth-promoting factor 2)-0.27310.2145
615_s_atPTHLH parathyroid hormone-like hormone-0.26380.2073
36503_atCCL21 chemokine (C-C motif) ligand 210.2498-0.1963
577_atMDK midkine (neurite growth-promoting factor 2)-0.24230.1904
34898_atAREG amphiregulin (schwannoma-derived growth factor)0.2394-0.1881
36958_atZYX zyxin0.239-0.1878
41198_atGRN granulin0.2327-0.1829
35204_atSEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A0.2284-0.1795
40303_atTFAP2C transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)-0.22240.1747
37989_atPTHLH parathyroid hormone-like hormone-0.20970.1648
725_i_atCSH1 chorionic somatomammotropin hormone 1 (placental lactogen)0.2021-0.1588
41586_atFGF18 fibroblast growth factor 180.1957-0.1538
32666_atCXCL12 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1)0.1847-0.1452
37231_atDLG7 discs, large homolog 7 (Drosophila)-0.17220.1353
1380_atFGF7 fibroblast growth factor 7 (keratinocyte growth factor)0.1574-0.1237
589_atSRD5A1 steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)-0.1560.1226
38487_atSTAB1 stabilin 10.1357-0.1067
36802_atCD33 CD33 antigen (gp67)0.0687-0.054
37454_atCCL13 chemokine (C-C motif) ligand 130.046-0.0362
39325_atEBAF endometrial bleeding associated factor (left-right determination, factor A; transforming growth factor beta superfamily)0.0364-0.0286
40454_atFAT FAT tumor suppressor homolog 1 (Drosophila)-0.02630.0207
38115_atTUSC2 tumor suppressor candidate 20.0107-0.0084
1128_s_atCCR1 chemokine (C-C motif) receptor 10.0105-0.0082
40686_atNMB neuromedin B-3e-043e-04

Performance on training data

 SensitivitySpecificity
NORMAL11
SQUAMOUS11

Performance on test data

 SensitivitySpecificity
NORMAL11
SQUAMOUS11

Predictions

 ClassNORMALSQUAMOUSPredictionn
CL2001031606AASQUAMOUS01 SQUAMOUS
CL2001031620AA (testset)SQUAMOUS1e-040.9999 SQUAMOUS
CL2001031621AASQUAMOUS01 SQUAMOUS
CL2001032122AASQUAMOUS01 SQUAMOUS
CL2001032129AA (testset)SQUAMOUS1e-050.99999 SQUAMOUS
CL2001032144AASQUAMOUS0.000190.99981 SQUAMOUS
CL2001032153AASQUAMOUS3e-050.99997 SQUAMOUS
CL2001032207AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032209AASQUAMOUS01 SQUAMOUS
CL2001032218AA (testset)SQUAMOUS0.001810.99819 SQUAMOUS
CL2001032222AASQUAMOUS1e-050.99999 SQUAMOUS
CL2001032231AA (testset)SQUAMOUS0.021070.97893 SQUAMOUS
CL2001032239AA (testset)SQUAMOUS0.000190.99981 SQUAMOUS
CL2001032240AASQUAMOUS01 SQUAMOUS
CL2001032305AASQUAMOUS1e-050.99999 SQUAMOUS
CL2001032608AASQUAMOUS01 SQUAMOUS
CL2001032627AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032644AASQUAMOUS2e-050.99998 SQUAMOUS
CL2001032719AASQUAMOUS01 SQUAMOUS
CL2001032732AASQUAMOUS01 SQUAMOUS
CL2001032853AASQUAMOUS0.000270.99973 SQUAMOUS
CL2001032010AA (testset)NORMAL10 NORMAL
CL2001032041AANORMAL10 NORMAL
CL2001032043AANORMAL10 NORMAL
CL2001032045AA (testset)NORMAL0.99991e-04 NORMAL
CL2001032046AANORMAL10 NORMAL
CL2001032102AANORMAL10 NORMAL
CL2001032128AA (testset)NORMAL10 NORMAL
CL2001032147AANORMAL10 NORMAL
CL2001032202AA (testset)NORMAL10 NORMAL
CL2001032206AANORMAL10 NORMAL
CL2001032220AANORMAL10 NORMAL
CL2001032256AANORMAL0.999180.00082 NORMAL
CL2001032304AANORMAL0.999991e-05 NORMAL
CL2001032718AANORMAL10 NORMAL
CL2001032724AA (testset)NORMAL0.999560.00044 NORMAL
CL2001032725AANORMAL0.999928e-05 NORMAL
CL2001032727AA (testset)NORMAL10 NORMAL

 


Generated by StAM on Tue Sep 7 18:07:29 2004