GO:0007229

GO:0007229

integrin-mediated signaling pathway (annotated genes)

Biological Process

Parent node

GO:0007166	cell surface receptor linked signal transduction

This leaf node contains 53 genes

The following 20 of these are used in classification:

	Symbol	Genename	NORMAL score	SQUAMOUS score
40304_at	BPAG1	bullous pemphigoid antigen 1, 230/240kDa	-0.7435	0.5842
41266_at	ITGA6	integrin, alpha 6	-0.6311	0.4958
41005_at	ITGA8	integrin, alpha 8	0.6006	-0.4719
406_at	ITGB4	integrin, beta 4	-0.4546	0.3572
120_at	ITGA1	integrin, alpha 1	0.4498	-0.3534
37484_at	ITGA1	integrin, alpha 1	0.4398	-0.3455
35365_at	ILK	integrin-linked kinase	0.3986	-0.3132
33411_g_at	ITGA6	integrin, alpha 6	-0.3483	0.2737
33410_at	ITGA6	integrin, alpha 6	-0.3263	0.2564
32780_at	BPAG1	bullous pemphigoid antigen 1, 230/240kDa	0.2974	-0.2337
38547_at	ITGAL	integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)	0.2723	-0.2139
36709_at	ITGAX	integrin, alpha X (antigen CD11C (p150), alpha polypeptide)	0.2668	-0.2096
37574_at	NEDD9	neural precursor cell expressed, developmentally down-regulated 9	0.2667	-0.2095
885_g_at	ITGA3	integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)	0.2363	-0.1856
36892_at	ITGA7	integrin, alpha 7	0.2021	-0.1588
39753_at	ITGA5	integrin, alpha 5 (fibronectin receptor, alpha polypeptide)	0.1161	-0.0912
39071_at	ITGAV	integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)	-0.1074	0.0844
884_at	ITGA3	integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)	0.0617	-0.0485
37918_at	ITGB2	integrin, beta 2 (antigen CD18 (p95), lymphocyte function-associated antigen 1; macrophage antigen 1 (mac-1) beta subunit)	0.0384	-0.0301
34974_at	ADAMDEC1	ADAM-like, decysin 1	-0.0224	0.0176

Performance on training data

• Error rate: 0
• Performance: 0.00675
• Redundancy: 5.33971

	Sensitivity	Specificity
NORMAL	1	1
SQUAMOUS	1	1

Performance on test data

• Error rate: 0
• Performance: 0.08759
• Redundancy: 4.31605

	Sensitivity	Specificity
NORMAL	1	1
SQUAMOUS	1	1

Predictions

	Class	NORMAL	SQUAMOUS	Predictionn
CL2001031606AA	SQUAMOUS	0.05836	0.94164	SQUAMOUS
CL2001031620AA (testset)	SQUAMOUS	0.00018	0.99982	SQUAMOUS
CL2001031621AA	SQUAMOUS	0.00016	0.99984	SQUAMOUS
CL2001032122AA	SQUAMOUS	3e-05	0.99997	SQUAMOUS
CL2001032129AA (testset)	SQUAMOUS	0.00449	0.99551	SQUAMOUS
CL2001032144AA	SQUAMOUS	7e-05	0.99993	SQUAMOUS
CL2001032153AA	SQUAMOUS	0.00031	0.99969	SQUAMOUS
CL2001032207AA (testset)	SQUAMOUS	0.00243	0.99757	SQUAMOUS
CL2001032209AA	SQUAMOUS	0	1	SQUAMOUS
CL2001032218AA (testset)	SQUAMOUS	0.00043	0.99957	SQUAMOUS
CL2001032222AA	SQUAMOUS	7e-05	0.99993	SQUAMOUS
CL2001032231AA (testset)	SQUAMOUS	0.01338	0.98662	SQUAMOUS
CL2001032239AA (testset)	SQUAMOUS	0.40055	0.59945	SQUAMOUS
CL2001032240AA	SQUAMOUS	0.00028	0.99972	SQUAMOUS
CL2001032305AA	SQUAMOUS	0.00431	0.99569	SQUAMOUS
CL2001032608AA	SQUAMOUS	1e-04	0.9999	SQUAMOUS
CL2001032627AA (testset)	SQUAMOUS	0.00102	0.99898	SQUAMOUS
CL2001032644AA	SQUAMOUS	0.00025	0.99975	SQUAMOUS
CL2001032719AA	SQUAMOUS	9e-05	0.99991	SQUAMOUS
CL2001032732AA	SQUAMOUS	0.01095	0.98905	SQUAMOUS
CL2001032853AA	SQUAMOUS	0.00287	0.99713	SQUAMOUS
CL2001032010AA (testset)	NORMAL	0.99998	2e-05	NORMAL
CL2001032041AA	NORMAL	0.9999	1e-04	NORMAL
CL2001032043AA	NORMAL	0.99986	0.00014	NORMAL
CL2001032045AA (testset)	NORMAL	0.99464	0.00536	NORMAL
CL2001032046AA	NORMAL	0.99974	0.00026	NORMAL
CL2001032102AA	NORMAL	0.99986	0.00014	NORMAL
CL2001032128AA (testset)	NORMAL	0.99868	0.00132	NORMAL
CL2001032147AA	NORMAL	0.99998	2e-05	NORMAL
CL2001032202AA (testset)	NORMAL	0.99998	2e-05	NORMAL
CL2001032206AA	NORMAL	0.99986	0.00014	NORMAL
CL2001032220AA	NORMAL	0.99976	0.00024	NORMAL
CL2001032256AA	NORMAL	0.99742	0.00258	NORMAL
CL2001032304AA	NORMAL	0.99976	0.00024	NORMAL
CL2001032718AA	NORMAL	0.99948	0.00052	NORMAL
CL2001032724AA (testset)	NORMAL	0.99315	0.00685	NORMAL
CL2001032725AA	NORMAL	0.99973	0.00027	NORMAL
CL2001032727AA (testset)	NORMAL	0.99868	0.00132	NORMAL