GO:0007179 | transforming growth factor beta receptor signaling pathway | Biological Process |
| GO:0007179 | transforming growth factor beta receptor signaling pathway |
|---|
The following 27 of these are used in classification:
| Symbol | Genename | NORMAL score | SQUAMOUS score | |
|---|---|---|---|---|
| 1897_at | TGFBR3 | transforming growth factor, beta receptor III (betaglycan, 300kDa) | 1.2638 | -0.993 |
| 41245_at | GDF10 | growth differentiation factor 10 | 0.8786 | -0.6903 |
| 1186_at | GDF10 | growth differentiation factor 10 | 0.856 | -0.6726 |
| 1857_at | MADH7 | MAD, mothers against decapentaplegic homolog 7 (Drosophila) | 0.6914 | -0.5433 |
| 37280_at | MADH1 | MAD, mothers against decapentaplegic homolog 1 (Drosophila) | -0.6683 | 0.5251 |
| 37906_at | LTBP2 | latent transforming growth factor beta binding protein 2 | 0.5676 | -0.446 |
| 1325_at | MADH1 | MAD, mothers against decapentaplegic homolog 1 (Drosophila) | -0.5518 | 0.4336 |
| 39325_at | EBAF | endometrial bleeding associated factor (left-right determination, factor A; transforming growth factor beta superfamily) | 0.3589 | -0.282 |
| 38374_at | TIEG | TGFB inducible early growth response | 0.3464 | -0.2722 |
| 1454_at | MADH3 | MAD, mothers against decapentaplegic homolog 3 (Drosophila) | -0.346 | 0.2719 |
| 224_at | TIEG | TGFB inducible early growth response | 0.3432 | -0.2696 |
| 1950_s_at | MADH3 | MAD, mothers against decapentaplegic homolog 3 (Drosophila) | -0.2963 | 0.2328 |
| 1433_g_at | MADH3 | MAD, mothers against decapentaplegic homolog 3 (Drosophila) | -0.2931 | 0.2303 |
| 38944_at | MADH3 | MAD, mothers against decapentaplegic homolog 3 (Drosophila) | -0.2315 | 0.1819 |
| 1499_at | FNTA | farnesyltransferase, CAAX box, alpha | -0.1919 | 0.1508 |
| 1634_s_at | TGFB1 | transforming growth factor, beta 1 (Camurati-Engelmann disease) | 0.1643 | -0.1291 |
| 1772_s_at | FNTA | farnesyltransferase, CAAX box, alpha | -0.1621 | 0.1274 |
| 1830_s_at | TGFB1 | transforming growth factor, beta 1 (Camurati-Engelmann disease) | 0.1387 | -0.109 |
| 1890_at | GDF15 | growth differentiation factor 15 | 0.1225 | -0.0962 |
| 36905_at | MAP3K7 | mitogen-activated protein kinase kinase kinase 7 | -0.1155 | 0.0908 |
| 37113_at | TGFBRAP1 | transforming growth factor, beta receptor associated protein 1 | -0.0809 | 0.0636 |
| 39926_at | MADH5 | MAD, mothers against decapentaplegic homolog 5 (Drosophila) | -0.0613 | 0.0482 |
| 1013_at | MADH5 | MAD, mothers against decapentaplegic homolog 5 (Drosophila) | -0.0549 | 0.0432 |
| 35932_at | LEFTB | left-right determination, factor B | 0.0268 | -0.0211 |
| 39565_at | BMPR1A | bone morphogenetic protein receptor, type IA | -0.0254 | 0.02 |
| 36356_at | GDF5 | growth differentiation factor 5 (cartilage-derived morphogenetic protein-1) | 0.0198 | -0.0156 |
| 1952_s_at | MADH5 | MAD, mothers against decapentaplegic homolog 5 (Drosophila) | 0.0115 | -0.009 |
| Sensitivity | Specificity | |
|---|---|---|
| NORMAL | 1 | 1 |
| SQUAMOUS | 1 | 1 |
| Sensitivity | Specificity | |
|---|---|---|
| NORMAL | 1 | 1 |
| SQUAMOUS | 1 | 1 |
| Class | NORMAL | SQUAMOUS | Predictionn | |
|---|---|---|---|---|
| CL2001031606AA | SQUAMOUS | 1e-05 | 0.99999 | SQUAMOUS |
| CL2001031620AA (testset) | SQUAMOUS | 0.00342 | 0.99658 | SQUAMOUS |
| CL2001031621AA | SQUAMOUS | 3e-05 | 0.99997 | SQUAMOUS |
| CL2001032122AA | SQUAMOUS | 2e-05 | 0.99998 | SQUAMOUS |
| CL2001032129AA (testset) | SQUAMOUS | 0.00124 | 0.99876 | SQUAMOUS |
| CL2001032144AA | SQUAMOUS | 0 | 1 | SQUAMOUS |
| CL2001032153AA | SQUAMOUS | 0.01163 | 0.98837 | SQUAMOUS |
| CL2001032207AA (testset) | SQUAMOUS | 5e-04 | 0.9995 | SQUAMOUS |
| CL2001032209AA | SQUAMOUS | 0.00051 | 0.99949 | SQUAMOUS |
| CL2001032218AA (testset) | SQUAMOUS | 0.00063 | 0.99937 | SQUAMOUS |
| CL2001032222AA | SQUAMOUS | 0 | 1 | SQUAMOUS |
| CL2001032231AA (testset) | SQUAMOUS | 0.00063 | 0.99937 | SQUAMOUS |
| CL2001032239AA (testset) | SQUAMOUS | 0.01275 | 0.98725 | SQUAMOUS |
| CL2001032240AA | SQUAMOUS | 0 | 1 | SQUAMOUS |
| CL2001032305AA | SQUAMOUS | 0.00055 | 0.99945 | SQUAMOUS |
| CL2001032608AA | SQUAMOUS | 0.00091 | 0.99909 | SQUAMOUS |
| CL2001032627AA (testset) | SQUAMOUS | 2e-05 | 0.99998 | SQUAMOUS |
| CL2001032644AA | SQUAMOUS | 0.00026 | 0.99974 | SQUAMOUS |
| CL2001032719AA | SQUAMOUS | 0.00013 | 0.99987 | SQUAMOUS |
| CL2001032732AA | SQUAMOUS | 2e-05 | 0.99998 | SQUAMOUS |
| CL2001032853AA | SQUAMOUS | 0.00216 | 0.99784 | SQUAMOUS |
| CL2001032010AA (testset) | NORMAL | 0.9838 | 0.0162 | NORMAL |
| CL2001032041AA | NORMAL | 0.99995 | 5e-05 | NORMAL |
| CL2001032043AA | NORMAL | 0.99999 | 1e-05 | NORMAL |
| CL2001032045AA (testset) | NORMAL | 0.99969 | 0.00031 | NORMAL |
| CL2001032046AA | NORMAL | 0.99861 | 0.00139 | NORMAL |
| CL2001032102AA | NORMAL | 0.99999 | 1e-05 | NORMAL |
| CL2001032128AA (testset) | NORMAL | 0.99974 | 0.00026 | NORMAL |
| CL2001032147AA | NORMAL | 0.99999 | 1e-05 | NORMAL |
| CL2001032202AA (testset) | NORMAL | 1 | 0 | NORMAL |
| CL2001032206AA | NORMAL | 0.99882 | 0.00118 | NORMAL |
| CL2001032220AA | NORMAL | 0.99999 | 1e-05 | NORMAL |
| CL2001032256AA | NORMAL | 0.99111 | 0.00889 | NORMAL |
| CL2001032304AA | NORMAL | 0.72115 | 0.27885 | NORMAL |
| CL2001032718AA | NORMAL | 1 | 0 | NORMAL |
| CL2001032724AA (testset) | NORMAL | 0.99753 | 0.00247 | NORMAL |
| CL2001032725AA | NORMAL | 0.99998 | 2e-05 | NORMAL |
| CL2001032727AA (testset) | NORMAL | 0.99997 | 3e-05 | NORMAL |