GO:0007160

GO:0007160

cell-matrix adhesion (annotated genes)

Biological Process

Parent node

GO:0007160	cell-matrix adhesion

This leaf node contains 73 genes

The following 19 of these are used in classification:

	Symbol	Genename	NORMAL score	SQUAMOUS score
41266_at	ITGA6	integrin, alpha 6	-0.5302	0.4166
41005_at	ITGA8	integrin, alpha 8	0.5037	-0.3958
34342_s_at	SPP1	secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)	-0.4939	0.3881
2092_s_at	SPP1	secreted phosphoprotein 1 (osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)	-0.4291	0.3372
406_at	ITGB4	integrin, beta 4	-0.3536	0.2778
120_at	ITGA1	integrin, alpha 1	0.351	-0.2758
37484_at	ITGA1	integrin, alpha 1	0.3414	-0.2682
35365_at	ILK	integrin-linked kinase	0.2994	-0.2352
33411_g_at	ITGA6	integrin, alpha 6	-0.2477	0.1946
39673_i_at	ECM2	extracellular matrix protein 2, female organ and adipocyte specific	0.2475	-0.1945
33410_at	ITGA6	integrin, alpha 6	-0.2254	0.1771
38547_at	ITGAL	integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)	0.1726	-0.1356
36709_at	ITGAX	integrin, alpha X (antigen CD11C (p150), alpha polypeptide)	0.1659	-0.1304
1125_s_at	CD44	CD44 antigen (homing function and Indian blood group system)	-0.1358	0.1067
885_g_at	ITGA3	integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)	0.1354	-0.1064
36892_at	ITGA7	integrin, alpha 7	0.1009	-0.0793
39753_at	ITGA5	integrin, alpha 5 (fibronectin receptor, alpha polypeptide)	0.015	-0.0118
734_at	MUC4	mucin 4, tracheobronchial	-0.0087	0.0069
39071_at	ITGAV	integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)	-0.006	0.0047

Performance on training data

• Error rate: 0
• Performance: 0.02738
• Redundancy: 4.7823

	Sensitivity	Specificity
NORMAL	1	1
SQUAMOUS	1	1

Performance on test data

• Error rate: 0
• Performance: 0.04378
• Redundancy: 3.8639

	Sensitivity	Specificity
NORMAL	1	1
SQUAMOUS	1	1

Predictions

	Class	NORMAL	SQUAMOUS	Predictionn
CL2001031606AA	SQUAMOUS	0.07022	0.92978	SQUAMOUS
CL2001031620AA (testset)	SQUAMOUS	0.01343	0.98657	SQUAMOUS
CL2001031621AA	SQUAMOUS	0.00026	0.99974	SQUAMOUS
CL2001032122AA	SQUAMOUS	0.00072	0.99928	SQUAMOUS
CL2001032129AA (testset)	SQUAMOUS	0.04196	0.95804	SQUAMOUS
CL2001032144AA	SQUAMOUS	0.00066	0.99934	SQUAMOUS
CL2001032153AA	SQUAMOUS	0.02333	0.97667	SQUAMOUS
CL2001032207AA (testset)	SQUAMOUS	0.00594	0.99406	SQUAMOUS
CL2001032209AA	SQUAMOUS	1e-05	0.99999	SQUAMOUS
CL2001032218AA (testset)	SQUAMOUS	0.08489	0.91511	SQUAMOUS
CL2001032222AA	SQUAMOUS	0.02402	0.97598	SQUAMOUS
CL2001032231AA (testset)	SQUAMOUS	0.06785	0.93215	SQUAMOUS
CL2001032239AA (testset)	SQUAMOUS	0.03094	0.96906	SQUAMOUS
CL2001032240AA	SQUAMOUS	0.00056	0.99944	SQUAMOUS
CL2001032305AA	SQUAMOUS	0.00358	0.99642	SQUAMOUS
CL2001032608AA	SQUAMOUS	0.00178	0.99822	SQUAMOUS
CL2001032627AA (testset)	SQUAMOUS	0.00076	0.99924	SQUAMOUS
CL2001032644AA	SQUAMOUS	0.00716	0.99284	SQUAMOUS
CL2001032719AA	SQUAMOUS	0.00011	0.99989	SQUAMOUS
CL2001032732AA	SQUAMOUS	0.01287	0.98713	SQUAMOUS
CL2001032853AA	SQUAMOUS	0.00596	0.99404	SQUAMOUS
CL2001032010AA (testset)	NORMAL	0.99982	0.00018	NORMAL
CL2001032041AA	NORMAL	0.99805	0.00195	NORMAL
CL2001032043AA	NORMAL	0.99963	0.00037	NORMAL
CL2001032045AA (testset)	NORMAL	0.99548	0.00452	NORMAL
CL2001032046AA	NORMAL	0.99925	0.00075	NORMAL
CL2001032102AA	NORMAL	0.99919	0.00081	NORMAL
CL2001032128AA (testset)	NORMAL	0.99832	0.00168	NORMAL
CL2001032147AA	NORMAL	0.99985	0.00015	NORMAL
CL2001032202AA (testset)	NORMAL	0.99988	0.00012	NORMAL
CL2001032206AA	NORMAL	0.99964	0.00036	NORMAL
CL2001032220AA	NORMAL	0.99947	0.00053	NORMAL
CL2001032256AA	NORMAL	0.85112	0.14888	NORMAL
CL2001032304AA	NORMAL	0.97975	0.02025	NORMAL
CL2001032718AA	NORMAL	0.99919	0.00081	NORMAL
CL2001032724AA (testset)	NORMAL	0.98933	0.01067	NORMAL
CL2001032725AA	NORMAL	0.99964	0.00036	NORMAL
CL2001032727AA (testset)	NORMAL	0.99527	0.00473	NORMAL