GO:0006470

GO:0006470

protein amino acid dephosphorylation (annotated genes)

Biological Process

Parent nodes

GO:0006464	protein modification
GO:0016311	dephosphorylation

This leaf node contains 140 genes

The following 8 of these are used in classification:

	Symbol	Genename	NORMAL score	SQUAMOUS score
37777_at	PTPRB	protein tyrosine phosphatase, receptor type, B	0.4764	-0.3743
407_at	PTPRB	protein tyrosine phosphatase, receptor type, B	0.3786	-0.2975
1005_at	DUSP1	dual specificity phosphatase 1	0.3734	-0.2934
995_g_at	PTPRM	protein tyrosine phosphatase, receptor type, M	0.2558	-0.201
41193_at	DUSP6	dual specificity phosphatase 6	0.2378	-0.1868
31892_at	PTPRM	protein tyrosine phosphatase, receptor type, M	0.226	-0.1776
994_at	PTPRM	protein tyrosine phosphatase, receptor type, M	0.1674	-0.1316
1599_at	CDKN3	cyclin-dependent kinase inhibitor 3 (CDK2-associated dual specificity phosphatase)	-0.0123	0.0096

Performance on training data

• Error rate: 0
• Performance: 0.08041
• Redundancy: 3.59669

	Sensitivity	Specificity
NORMAL	1	1
SQUAMOUS	1	1

Performance on test data

• Error rate: 0
• Performance: 0.12422
• Redundancy: 3.28745

	Sensitivity	Specificity
NORMAL	1	1
SQUAMOUS	1	1

Predictions

	Class	NORMAL	SQUAMOUS	Predictionn
CL2001031606AA	SQUAMOUS	0.01943	0.98057	SQUAMOUS
CL2001031620AA (testset)	SQUAMOUS	0.00588	0.99412	SQUAMOUS
CL2001031621AA	SQUAMOUS	0.01644	0.98356	SQUAMOUS
CL2001032122AA	SQUAMOUS	0.02947	0.97053	SQUAMOUS
CL2001032129AA (testset)	SQUAMOUS	0.03486	0.96514	SQUAMOUS
CL2001032144AA	SQUAMOUS	0.02626	0.97374	SQUAMOUS
CL2001032153AA	SQUAMOUS	0.0702	0.9298	SQUAMOUS
CL2001032207AA (testset)	SQUAMOUS	0.0239	0.9761	SQUAMOUS
CL2001032209AA	SQUAMOUS	0.01587	0.98413	SQUAMOUS
CL2001032218AA (testset)	SQUAMOUS	0.02275	0.97725	SQUAMOUS
CL2001032222AA	SQUAMOUS	0.00471	0.99529	SQUAMOUS
CL2001032231AA (testset)	SQUAMOUS	0.10223	0.89777	SQUAMOUS
CL2001032239AA (testset)	SQUAMOUS	0.07817	0.92183	SQUAMOUS
CL2001032240AA	SQUAMOUS	0.01231	0.98769	SQUAMOUS
CL2001032305AA	SQUAMOUS	0.00861	0.99139	SQUAMOUS
CL2001032608AA	SQUAMOUS	0.03965	0.96035	SQUAMOUS
CL2001032627AA (testset)	SQUAMOUS	0.00624	0.99376	SQUAMOUS
CL2001032644AA	SQUAMOUS	0.03292	0.96708	SQUAMOUS
CL2001032719AA	SQUAMOUS	0.03907	0.96093	SQUAMOUS
CL2001032732AA	SQUAMOUS	0.00247	0.99753	SQUAMOUS
CL2001032853AA	SQUAMOUS	0.00675	0.99325	SQUAMOUS
CL2001032010AA (testset)	NORMAL	0.98789	0.01211	NORMAL
CL2001032041AA	NORMAL	0.99006	0.00994	NORMAL
CL2001032043AA	NORMAL	0.98652	0.01348	NORMAL
CL2001032045AA (testset)	NORMAL	0.93205	0.06795	NORMAL
CL2001032046AA	NORMAL	0.97489	0.02511	NORMAL
CL2001032102AA	NORMAL	0.98741	0.01259	NORMAL
CL2001032128AA (testset)	NORMAL	0.98248	0.01752	NORMAL
CL2001032147AA	NORMAL	0.9996	4e-04	NORMAL
CL2001032202AA (testset)	NORMAL	0.99851	0.00149	NORMAL
CL2001032206AA	NORMAL	0.89807	0.10193	NORMAL
CL2001032220AA	NORMAL	0.9554	0.0446	NORMAL
CL2001032256AA	NORMAL	0.99856	0.00144	NORMAL
CL2001032304AA	NORMAL	0.63909	0.36091	NORMAL
CL2001032718AA	NORMAL	0.99608	0.00392	NORMAL
CL2001032724AA (testset)	NORMAL	0.64798	0.35202	NORMAL
CL2001032725AA	NORMAL	0.99345	0.00655	NORMAL
CL2001032727AA (testset)	NORMAL	0.99857	0.00143	NORMAL