GO:0006281

GO:0006281

DNA repair (annotated genes)

Biological Process

Parent node

GO:0006281	DNA repair

This leaf node contains 100 genes

The following 16 of these are used in classification:

	Symbol	Genename	NORMAL score	SQUAMOUS score
1884_s_at	PCNA	proliferating cell nuclear antigen	-0.7599	0.5971
40412_at	PTTG1	pituitary tumor-transforming 1	-0.6942	0.5455
37229_at	ATR	ataxia telangiectasia and Rad3 related	-0.4611	0.3623
1824_s_at	PCNA	proliferating cell nuclear antigen	-0.2574	0.2022
32589_at	CHAF1A	chromatin assembly factor 1, subunit A (p150)	-0.2305	0.1811
35852_at	CRY2	cryptochrome 2 (photolyase-like)	0.2033	-0.1597
36634_at	BTG2	BTG family, member 2	0.1669	-0.1311
1382_at	RPA1	replication protein A1, 70kDa	-0.1602	0.1259
35723_at	NUDT1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	-0.1248	0.0981
34380_at	FANCG	Fanconi anemia, complementation group G	-0.1142	0.0898
32849_at	SMC1L1	SMC1 structural maintenance of chromosomes 1-like 1 (yeast)	-0.1071	0.0842
38481_at	RPA1	replication protein A1, 70kDa	-0.105	0.0825
1544_at	BLM	Bloom syndrome	-0.0943	0.0741
1688_s_at	MNAT1	menage a trois 1 (CAK assembly factor)	-0.0892	0.07
41085_at	POLE2	polymerase (DNA directed), epsilon 2 (p59 subunit)	-0.0701	0.0551
37584_at	FANCG	Fanconi anemia, complementation group G	-0.052	0.0408

Performance on training data

• Error rate: 0
• Performance: 0.05103
• Redundancy: 4.45566

	Sensitivity	Specificity
NORMAL	1	1
SQUAMOUS	1	1

Performance on test data

• Error rate: 0.07692
• Performance: 0.22296
• Redundancy: 3.76374

	Sensitivity	Specificity
NORMAL	1	0.85714
SQUAMOUS	0.85714	1

Predictions

	Class	NORMAL	SQUAMOUS	Predictionn
CL2001031606AA	SQUAMOUS	0.00013	0.99987	SQUAMOUS
CL2001031620AA (testset)	SQUAMOUS	0.00376	0.99624	SQUAMOUS
CL2001031621AA	SQUAMOUS	0.00106	0.99894	SQUAMOUS
CL2001032122AA	SQUAMOUS	0.02279	0.97721	SQUAMOUS
CL2001032129AA (testset)	SQUAMOUS	0.00439	0.99561	SQUAMOUS
CL2001032144AA	SQUAMOUS	0.0182	0.9818	SQUAMOUS
CL2001032153AA	SQUAMOUS	0.01569	0.98431	SQUAMOUS
CL2001032207AA (testset)	SQUAMOUS	0.0177	0.9823	SQUAMOUS
CL2001032209AA	SQUAMOUS	2e-05	0.99998	SQUAMOUS
CL2001032218AA (testset)	SQUAMOUS	0.12829	0.87171	SQUAMOUS
CL2001032222AA	SQUAMOUS	0.00021	0.99979	SQUAMOUS
CL2001032231AA (testset)	SQUAMOUS	0.69236	0.30764	NORMAL
CL2001032239AA (testset)	SQUAMOUS	0.01834	0.98166	SQUAMOUS
CL2001032240AA	SQUAMOUS	0.01697	0.98303	SQUAMOUS
CL2001032305AA	SQUAMOUS	0.15236	0.84764	SQUAMOUS
CL2001032608AA	SQUAMOUS	0.03268	0.96732	SQUAMOUS
CL2001032627AA (testset)	SQUAMOUS	0.01273	0.98727	SQUAMOUS
CL2001032644AA	SQUAMOUS	0.00471	0.99529	SQUAMOUS
CL2001032719AA	SQUAMOUS	0.00019	0.99981	SQUAMOUS
CL2001032732AA	SQUAMOUS	0.01578	0.98422	SQUAMOUS
CL2001032853AA	SQUAMOUS	0.05217	0.94783	SQUAMOUS
CL2001032010AA (testset)	NORMAL	0.98732	0.01268	NORMAL
CL2001032041AA	NORMAL	0.99627	0.00373	NORMAL
CL2001032043AA	NORMAL	0.99866	0.00134	NORMAL
CL2001032045AA (testset)	NORMAL	0.99818	0.00182	NORMAL
CL2001032046AA	NORMAL	0.99928	0.00072	NORMAL
CL2001032102AA	NORMAL	0.99833	0.00167	NORMAL
CL2001032128AA (testset)	NORMAL	0.99833	0.00167	NORMAL
CL2001032147AA	NORMAL	0.99596	0.00404	NORMAL
CL2001032202AA (testset)	NORMAL	0.99877	0.00123	NORMAL
CL2001032206AA	NORMAL	0.999	0.001	NORMAL
CL2001032220AA	NORMAL	0.9996	4e-04	NORMAL
CL2001032256AA	NORMAL	0.79158	0.20842	NORMAL
CL2001032304AA	NORMAL	0.96272	0.03728	NORMAL
CL2001032718AA	NORMAL	0.99603	0.00397	NORMAL
CL2001032724AA (testset)	NORMAL	0.99584	0.00416	NORMAL
CL2001032725AA	NORMAL	0.99941	0.00059	NORMAL
CL2001032727AA (testset)	NORMAL	0.99977	0.00023	NORMAL