GO:0006091


GO:0006091

energy pathways
(annotated genes)

Biological
Process

Parent node

This leaf node contains 85 genes

The following 48 of these are used in classification:

 SymbolGenenameNORMAL scoreSQUAMOUS score
35164_atWFS1 Wolfram syndrome 1 (wolframin)1.0228-0.8037
36668_atDIA1 diaphorase (NADH) (cytochrome b-5 reductase)0.8077-0.6346
37104_atPPARG peroxisome proliferative activated receptor, gamma0.7599-0.5971
32573_atCOX6A1 cytochrome c oxidase subunit VIa polypeptide 1-0.6660.5233
34811_atATP5G3 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3-0.65350.5135
35638_atCBFA2T1 core-binding factor, runt domain, alpha subunit 2; translocated to, 1; cyclin D-related0.6307-0.4956
36417_s_atACAA1 acetyl-Coenzyme A acyltransferase 1 (peroxisomal 3-oxoacyl-Coenzyme A thiolase)0.5299-0.4163
40415_atACAA1 acetyl-Coenzyme A acyltransferase 1 (peroxisomal 3-oxoacyl-Coenzyme A thiolase)0.4847-0.3808
36163_atDLD dihydrolipoamide dehydrogenase (E3 component of pyruvate dehydrogenase complex, 2-oxo-glutarate complex, branched chain keto acid dehydrogenase complex)-0.37020.2908
41206_r_atCOX6A1 cytochrome c oxidase subunit VIa polypeptide 1-0.36230.2846
31503_atATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide-0.35650.2801
36165_atCOX6C cytochrome c oxidase subunit VIc-0.29910.235
40470_atOGDH oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)0.287-0.2255
38080_atCOX8 cytochrome c oxidase subunit VIII-0.28550.2243
39291_atPHKA1 phosphorylase kinase, alpha 1 (muscle)-0.26240.2061
36169_atNDUFA1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa-0.23980.1884
36480_atPHKA2 phosphorylase kinase, alpha 2 (liver)-0.2370.1862
40673_atACADSB acyl-Coenzyme A dehydrogenase, short/branched chain-0.20680.1625
160044_g_atACO2 aconitase 2, mitochondrial-0.20120.1581
37675_atSLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3-0.19240.1512
36107_atATP5J ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6-0.18140.1426
35640_atCBFA2T1 core-binding factor, runt domain, alpha subunit 2; translocated to, 1; cyclin D-related0.1766-0.1388
39027_atCOX4I1 cytochrome c oxidase subunit IV isoform 1-0.16180.1271
32822_atSLC25A4 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 40.1609-0.1264
36405_s_atGLP1R glucagon-like peptide 1 receptor0.1551-0.1219
37925_r_atAPOM apolipoprotein M0.1536-0.1207
34332_atGNPDA1 glucosamine-6-phosphate deaminase 1-0.14890.117
36893_atFDX1 ferredoxin 10.147-0.1155
37329_atNDUFV1 NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa-0.14450.1135
35590_s_atGIPR gastric inhibitory polypeptide receptor-0.14150.1112
41722_atNNT nicotinamide nucleotide transhydrogenase-0.12860.101
39408_atACADS acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain0.1249-0.0981
34422_r_atUCP3 uncoupling protein 3 (mitochondrial, proton carrier)0.1019-0.0801
40657_r_atACDC adipocyte, C1Q and collagen domain containing0.0893-0.0702
40336_atFDXR ferredoxin reductase-0.07520.0591
31773_atCYB561 cytochrome b-5610.0681-0.0535
34420_atUCP3 uncoupling protein 3 (mitochondrial, proton carrier)0.055-0.0432
37152_atPPARD peroxisome proliferative activated receptor, delta-0.05410.0425
33258_g_atDLST dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)-0.05220.041
32955_atCOX6A1 cytochrome c oxidase subunit VIa polypeptide 1-0.04930.0388
37016_atECHS1 enoyl Coenzyme A hydratase, short chain, 1, mitochondrial-0.04820.0379
33493_atHFL-EDDG1 erythroid differentiation and denucleation factor 1-0.03530.0278
33257_atDLST dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)0.0336-0.0264
38425_atHMGCL 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria)-0.01820.0143
36986_atHMGCL 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria)-0.01810.0142
160038_s_atINS insulin0.0079-0.0062
37592_atCKMT2 creatine kinase, mitochondrial 2 (sarcomeric)0.001-8e-04
34381_atCOX7C cytochrome c oxidase subunit VIIc2e-04-2e-04

Performance on training data

 SensitivitySpecificity
NORMAL11
SQUAMOUS11

Performance on test data

 SensitivitySpecificity
NORMAL11
SQUAMOUS11

Predictions

 ClassNORMALSQUAMOUSPredictionn
CL2001031606AASQUAMOUS01 SQUAMOUS
CL2001031620AA (testset)SQUAMOUS0.000130.99987 SQUAMOUS
CL2001031621AASQUAMOUS5e-050.99995 SQUAMOUS
CL2001032122AASQUAMOUS01 SQUAMOUS
CL2001032129AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032144AASQUAMOUS01 SQUAMOUS
CL2001032153AASQUAMOUS0.000170.99983 SQUAMOUS
CL2001032207AA (testset)SQUAMOUS01 SQUAMOUS
CL2001032209AASQUAMOUS01 SQUAMOUS
CL2001032218AA (testset)SQUAMOUS0.000820.99918 SQUAMOUS
CL2001032222AASQUAMOUS01 SQUAMOUS
CL2001032231AA (testset)SQUAMOUS0.085750.91425 SQUAMOUS
CL2001032239AA (testset)SQUAMOUS0.005820.99418 SQUAMOUS
CL2001032240AASQUAMOUS0.012530.98747 SQUAMOUS
CL2001032305AASQUAMOUS0.000150.99985 SQUAMOUS
CL2001032608AASQUAMOUS0.034770.96523 SQUAMOUS
CL2001032627AA (testset)SQUAMOUS0.000980.99902 SQUAMOUS
CL2001032644AASQUAMOUS01 SQUAMOUS
CL2001032719AASQUAMOUS6e-050.99994 SQUAMOUS
CL2001032732AASQUAMOUS0.001260.99874 SQUAMOUS
CL2001032853AASQUAMOUS0.007440.99256 SQUAMOUS
CL2001032010AA (testset)NORMAL10 NORMAL
CL2001032041AANORMAL0.999946e-05 NORMAL
CL2001032043AANORMAL10 NORMAL
CL2001032045AA (testset)NORMAL10 NORMAL
CL2001032046AANORMAL10 NORMAL
CL2001032102AANORMAL10 NORMAL
CL2001032128AA (testset)NORMAL0.999991e-05 NORMAL
CL2001032147AANORMAL0.999982e-05 NORMAL
CL2001032202AA (testset)NORMAL10 NORMAL
CL2001032206AANORMAL0.999890.00011 NORMAL
CL2001032220AANORMAL10 NORMAL
CL2001032256AANORMAL0.980170.01983 NORMAL
CL2001032304AANORMAL0.999955e-05 NORMAL
CL2001032718AANORMAL0.999973e-05 NORMAL
CL2001032724AA (testset)NORMAL0.999880.00012 NORMAL
CL2001032725AANORMAL10 NORMAL
CL2001032727AA (testset)NORMAL10 NORMAL

 


Generated by StAM on Tue Sep 7 18:07:25 2004