GO:0030154

GO:0030154

cell differentiation (annotated genes)

Biological Process

Parent node

GO:0030154	cell differentiation

This leaf node contains 72 genes

The following 63 of these are used in classification:

	Symbol	Genename	SQUAMOUS score	other score
38750_at	NOTCH3	Notch homolog 3 (Drosophila)	0.9594	-0.111
38156_at	MDFI	MyoD family inhibitor	0.9509	-0.11
41401_at	CSRP2	cysteine and glycine-rich protein 2	0.7077	-0.0819
32137_at	JAG2	jagged 2	0.6084	-0.0704
39154_at	GADD45G	growth arrest and DNA-damage-inducible, gamma	-0.5922	0.0685
38512_r_at	ELAVL3	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	-0.578	0.0669
33139_s_at	MLF1	myeloid leukemia factor 1	0.5706	-0.066
1148_s_at	NRG1	neuregulin 1	0.4862	-0.0563
38063_at	PBXIP1	pre-B-cell leukemia transcription factor interacting protein 1	-0.4478	0.0518
32719_at	NRG1	neuregulin 1	0.4041	-0.0468
40500_at	NDRG4	NDRG family member 4	0.2962	-0.0343
35081_at	FGF9	fibroblast growth factor 9 (glia-activating factor)	-0.2878	0.0333
37504_at	SMURF1	E3 ubiquitin ligase SMURF1	0.2842	-0.0329
31355_at	ASCL2	achaete-scute complex-like 2 (Drosophila)	0.2815	-0.0326
39712_at	S100A13	S100 calcium binding protein A13	-0.2692	0.0311
1918_at	SKI	v-ski sarcoma viral oncogene homolog (avian)	-0.2528	0.0292
209_at	NRG1	neuregulin 1	0.2526	-0.0292
37140_s_at	ED1	ectodermal dysplasia 1, anhidrotic	0.2443	-0.0283
33653_at	MYF5	myogenic factor 5	-0.2401	0.0278
38616_at	NDRG2	NDRG family member 2	-0.2393	0.0277
560_s_at	TAL1	T-cell acute lymphocytic leukemia 1	-0.2311	0.0267
40544_g_at	ASCL1	achaete-scute complex-like 1 (Drosophila)	-0.2305	0.0267
32542_at	FHL1	four and a half LIM domains 1	-0.2257	0.0261
1743_s_at	SKIL	SKI-like	0.2237	-0.0259
41499_at	SKI	v-ski sarcoma viral oncogene homolog (avian)	0.2155	-0.0249
38205_at	NEUROD2	neurogenic differentiation 2	-0.2078	0.024
38124_at	MDK	midkine (neurite growth-promoting factor 2)	-0.1968	0.0228
33146_at	MCL1	myeloid cell leukemia sequence 1 (BCL2-related)	-0.1848	0.0214
40118_at	ZNF3	zinc finger protein 3 (A8-51)	0.1838	-0.0213
40357_at	INHBA	inhibin, beta A (activin A, activin AB alpha polypeptide)	0.1823	-0.0211
577_at	MDK	midkine (neurite growth-promoting factor 2)	-0.1816	0.021
38544_at	INHA	inhibin, alpha	-0.175	0.0202
277_at	MCL1	myeloid cell leukemia sequence 1 (BCL2-related)	-0.1705	0.0197
37425_g_at	C6orf18	chromosome 6 open reading frame 18	0.1611	-0.0186
887_at	GDF1	growth differentiation factor 1	0.1603	-0.0185
36613_at	IFRD2	interferon-related developmental regulator 2	-0.1558	0.018
1866_g_at	SKIL	SKI-like	0.1552	-0.018
39048_at	NOTCH4	Notch homolog 4 (Drosophila)	-0.1521	0.0176
40542_at	ASCL1	achaete-scute complex-like 1 (Drosophila)	-0.1521	0.0176
39676_at	MYF6	myogenic factor 6 (herculin)	-0.1421	0.0164
1616_at	FGF9	fibroblast growth factor 9 (glia-activating factor)	-0.1321	0.0153
40543_at	ASCL1	achaete-scute complex-like 1 (Drosophila)	-0.1266	0.0146
38545_at	INHBB	inhibin, beta B (activin AB beta polypeptide)	-0.1214	0.014
32549_at	PAPPA	pregnancy-associated plasma protein A	-0.1049	0.0121
31741_at	PAX4	paired box gene 4	0.1022	-0.0118
37424_at	C6orf18	chromosome 6 open reading frame 18	0.0833	-0.0096
882_at	CSF1	colony stimulating factor 1 (macrophage)	0.079	-0.0091
32320_at	ANXA13	annexin A13	0.0705	-0.0082
39508_at	NDRG2	NDRG family member 2	-0.0618	0.0071
31658_at	NEUROG3	neurogenin 3	0.0555	-0.0064
32410_at	MYOG	myogenin (myogenic factor 4)	0.0512	-0.0059
38083_at	NOTCH2	Notch homolog 2 (Drosophila)	0.0436	-0.005
39935_at	SKIL	SKI-like	0.0431	-0.005
1170_at	CSF1	colony stimulating factor 1 (macrophage)	-0.0372	0.0043
1203_at	INHBA	inhibin, beta A (activin A, activin AB alpha polypeptide)	-0.0364	0.0042
33138_at	MLF1	myeloid leukemia factor 1	-0.0347	0.004
34620_at	PAX5	paired box gene 5 (B-cell lineage specific activator protein)	-0.0339	0.0039
41578_at	NHLH2	nescient helix loop helix 2	0.0236	-0.0027
41500_at	SKI	v-ski sarcoma viral oncogene homolog (avian)	-0.0197	0.0023
36768_at	NEUROD1	neurogenic differentiation 1	0.0153	-0.0018
31740_s_at	PAX4	paired box gene 4	0.015	-0.0017
1865_at	SKIL	SKI-like	-0.0121	0.0014
37139_at	ED1	ectodermal dysplasia 1, anhidrotic	-0.0104	0.0012

Performance on training data

• Error rate: 0.02963
• Performance: 0.15387
• Redundancy: 3.99373

	Sensitivity	Specificity
SQUAMOUS	0.78571	0.99174
other	0.99174	0.78571

Performance on test data

• Error rate: 0.05882
• Performance: 0.30862
• Redundancy: 4.29254

	Sensitivity	Specificity
SQUAMOUS	0.57143	0.98361
other	0.98361	0.57143

Predictions

	Class	SQUAMOUS	other	Predictionn
CL2001031606AA (testset)	SQUAMOUS	0.16469	0.83531	other
CL2001031607AA	other	0.00066	0.99934	other
CL2001031608AA	other	0.00113	0.99887	other
CL2001031609AA (testset)	other	0.00395	0.99605	other
CL2001031611AA	other	0.00683	0.99317	other
CL2001031612AA (testset)	other	0.01354	0.98646	other
CL2001031613AA (testset)	other	0.0097	0.9903	other
CL2001031615AA (testset)	other	0.09421	0.90579	other
CL2001031616AA	other	0.31324	0.68676	other
CL2001031618AA	other	0.00049	0.99951	other
CL2001031620AA	SQUAMOUS	0.66292	0.33708	SQUAMOUS
CL2001031621AA	SQUAMOUS	0.80786	0.19214	SQUAMOUS
CL2001031622AA	other	0.26946	0.73054	other
CL2001031625AA	other	0.00155	0.99845	other
CL2001031627AA (testset)	other	0.00487	0.99513	other
CL2001031628AA	other	0.00056	0.99944	other
CL2001031629AA	other	0.37141	0.62859	other
CL2001031630AA	other	0.00069	0.99931	other
CL2001031631AA (testset)	other	0.05247	0.94753	other
CL2001031632AA	other	0.14805	0.85195	other
CL2001031634AA	other	0.00289	0.99711	other
CL2001031635AA (testset)	other	0.00067	0.99933	other
CL2001031636AA (testset)	other	0.00496	0.99504	other
CL2001032002AA	other	0.00013	0.99987	other
CL2001032005AA	other	0.00022	0.99978	other
CL2001032008AA	other	0.03542	0.96458	other
CL2001032009AA	other	1e-05	0.99999	other
CL2001032010AA	other	0.00125	0.99875	other
CL2001032011AA	other	0.00475	0.99525	other
CL2001032012AA	other	8e-05	0.99992	other
CL2001032013AA	other	0.0062	0.9938	other
CL2001032015AA (testset)	other	0.01742	0.98258	other
CL2001032016AA (testset)	other	0.00048	0.99952	other
CL2001032019AA	other	0.00226	0.99774	other
CL2001032020AA (testset)	other	0.02077	0.97923	other
CL2001032025AA (testset)	other	0.00017	0.99983	other
CL2001032026AA	other	0.00125	0.99875	other
CL2001032027AA (testset)	other	0.00234	0.99766	other
CL2001032030AA (testset)	other	0.00349	0.99651	other
CL2001032031AA (testset)	other	0.00905	0.99095	other
CL2001032032AA	other	0.00026	0.99974	other
CL2001032034AA (testset)	other	0.00054	0.99946	other
CL2001032036AA	other	0.74468	0.25532	SQUAMOUS
CL2001032041AA (testset)	other	0.0123	0.9877	other
CL2001032043AA	other	0.00052	0.99948	other
CL2001032044AA	other	0.00036	0.99964	other
CL2001032045AA (testset)	other	0.00053	0.99947	other
CL2001032046AA	other	0.00051	0.99949	other
CL2001032101AA	other	0.00266	0.99734	other
CL2001032102AA	other	0.00046	0.99954	other
CL2001032103AA	other	0.00085	0.99915	other
CL2001032104AA	other	0.09032	0.90968	other
CL2001032105AA	other	0.00407	0.99593	other
CL2001032107AA	other	0.00025	0.99975	other
CL2001032108AA (testset)	other	6e-05	0.99994	other
CL2001032109AA (testset)	other	2e-05	0.99998	other
CL2001032110AA	other	8e-04	0.9992	other
CL2001032111AA (testset)	other	0.00203	0.99797	other
CL2001032113AA	other	0.0023	0.9977	other
CL2001032114AA	other	0.00221	0.99779	other
CL2001032115AA	other	0.00013	0.99987	other
CL2001032116AA	other	0.0018	0.9982	other
CL2001032117AA (testset)	other	0.01299	0.98701	other
CL2001032121AA	other	0.00269	0.99731	other
CL2001032122AA	SQUAMOUS	0.51224	0.48776	SQUAMOUS
CL2001032124AA (testset)	other	0.00982	0.99018	other
CL2001032125AA	other	0.08294	0.91706	other
CL2001032127AA (testset)	other	0.00054	0.99946	other
CL2001032128AA (testset)	other	0.00131	0.99869	other
CL2001032129AA (testset)	SQUAMOUS	0.98607	0.01393	SQUAMOUS
CL2001032130AA	other	0.04405	0.95595	other
CL2001032132AA (testset)	other	0.00228	0.99772	other
CL2001032134AA	other	0.01625	0.98375	other
CL2001032135AA	other	0.00519	0.99481	other
CL2001032136AA (testset)	other	0.0541	0.9459	other
CL2001032138AA	other	0.01006	0.98994	other
CL2001032141AA	other	0.09522	0.90478	other
CL2001032142AA	other	0.18213	0.81787	other
CL2001032144AA	SQUAMOUS	0.96247	0.03753	SQUAMOUS
CL2001032145AA (testset)	other	4e-05	0.99996	other
CL2001032147AA (testset)	other	0.00177	0.99823	other
CL2001032149AA (testset)	other	0.03727	0.96273	other
CL2001032151AA (testset)	other	0.00014	0.99986	other
CL2001032152AA	other	5e-05	0.99995	other
CL2001032153AA (testset)	SQUAMOUS	0.26277	0.73723	other
CL2001032155AA	other	0.00884	0.99116	other
CL2001032156AA	other	0.01176	0.98824	other
CL2001032202AA	other	0.00416	0.99584	other
CL2001032206AA (testset)	other	0.0043	0.9957	other
CL2001032207AA	SQUAMOUS	0.97271	0.02729	SQUAMOUS
CL2001032209AA (testset)	SQUAMOUS	0.98389	0.01611	SQUAMOUS
CL2001032210AA	other	0.00277	0.99723	other
CL2001032211AA (testset)	other	0.01611	0.98389	other
CL2001032212AA (testset)	other	0.06393	0.93607	other
CL2001032213AA	other	0.00587	0.99413	other
CL2001032214AA	other	0.00796	0.99204	other
CL2001032217AA (testset)	other	0.00017	0.99983	other
CL2001032218AA	SQUAMOUS	0.8416	0.1584	SQUAMOUS
CL2001032219AA	other	0.00054	0.99946	other
CL2001032220AA	other	0.00042	0.99958	other
CL2001032222AA	SQUAMOUS	0.25496	0.74504	other
CL2001032229AA	other	0.00241	0.99759	other
CL2001032231AA	SQUAMOUS	0.2919	0.7081	other
CL2001032232AA (testset)	other	0.00067	0.99933	other
CL2001032233AA	other	0.01969	0.98031	other
CL2001032238AA (testset)	other	7e-05	0.99993	other
CL2001032239AA	SQUAMOUS	0.74359	0.25641	SQUAMOUS
CL2001032240AA	SQUAMOUS	0.98634	0.01366	SQUAMOUS
CL2001032241AA	other	0.00098	0.99902	other
CL2001032242AA	other	0.00544	0.99456	other
CL2001032243AA (testset)	other	0.00026	0.99974	other
CL2001032248AA	other	0.00144	0.99856	other
CL2001032249AA	other	0.00223	0.99777	other
CL2001032252AA	other	0.47678	0.52322	other
CL2001032254AA (testset)	other	0.00365	0.99635	other
CL2001032255AA (testset)	other	0.02322	0.97678	other
CL2001032256AA	other	0.00131	0.99869	other
CL2001032259AA (testset)	other	2e-04	0.9998	other
CL2001032260AA (testset)	other	0.00703	0.99297	other
CL2001032301AA	other	0.01428	0.98572	other
CL2001032304AA	other	0.0086	0.9914	other
CL2001032305AA (testset)	SQUAMOUS	0.00971	0.99029	other
CL2001032306AA	other	0.04252	0.95748	other
CL2001032307AA	other	0.00571	0.99429	other
CL2001032308AA	other	0.01739	0.98261	other
CL2001032309AA	other	0.00018	0.99982	other
CL2001032310AA	other	0.00051	0.99949	other
CL2001032311AA	other	0.24822	0.75178	other
CL2001032312AA	other	0.00328	0.99672	other
CL2001032313AA	other	0.01247	0.98753	other
CL2001032314AA	other	0.00033	0.99967	other
CL2001032316AA	other	8e-05	0.99992	other
CL2001032601AA	other	0.00382	0.99618	other
CL2001032602AA (testset)	other	0.00039	0.99961	other
CL2001032604AA (testset)	other	0.00141	0.99859	other
CL2001032607AA (testset)	other	0.00358	0.99642	other
CL2001032608AA	SQUAMOUS	0.99673	0.00327	SQUAMOUS
CL2001032610AA	other	0.00354	0.99646	other
CL2001032612AA	other	0.00453	0.99547	other
CL2001032613AA	other	0.00179	0.99821	other
CL2001032614AA (testset)	other	0.00383	0.99617	other
CL2001032616AA	other	0.00026	0.99974	other
CL2001032617AA	other	0.06219	0.93781	other
CL2001032620AA	other	0.00732	0.99268	other
CL2001032625AA	other	0.00038	0.99962	other
CL2001032627AA	SQUAMOUS	0.99582	0.00418	SQUAMOUS
CL2001032628AA	other	0.00257	0.99743	other
CL2001032629AA (testset)	other	6e-05	0.99994	other
CL2001032630AA (testset)	other	0.00086	0.99914	other
CL2001032632AA	other	0.00138	0.99862	other
CL2001032638AA	other	0.02243	0.97757	other
CL2001032640AA	other	6e-05	0.99994	other
CL2001032643AA	other	0.06878	0.93122	other
CL2001032644AA (testset)	SQUAMOUS	0.6457	0.3543	SQUAMOUS
CL2001032647AA	other	0.00586	0.99414	other
CL2001032701AA	other	0.00076	0.99924	other
CL2001032702AA	other	0.0122	0.9878	other
CL2001032703AA	other	0.01201	0.98799	other
CL2001032704AA	other	0.00124	0.99876	other
CL2001032706AA	other	0.00076	0.99924	other
CL2001032709AA (testset)	other	0.01555	0.98445	other
CL2001032716AA	other	0.03219	0.96781	other
CL2001032717AA (testset)	other	0.00385	0.99615	other
CL2001032718AA	other	0.01962	0.98038	other
CL2001032719AA (testset)	SQUAMOUS	0.9487	0.0513	SQUAMOUS
CL2001032720AA	other	0.00012	0.99988	other
CL2001032722AA	other	0.00143	0.99857	other
CL2001032724AA	other	0.00019	0.99981	other
CL2001032725AA (testset)	other	0.00112	0.99888	other
CL2001032727AA	other	0.00105	0.99895	other
CL2001032729AA	other	0.00143	0.99857	other
CL2001032730AA	other	0.00451	0.99549	other
CL2001032732AA	SQUAMOUS	0.32187	0.67813	other
CL2001032733AA (testset)	other	4e-04	0.9996	other
CL2001032738AA	other	0.00192	0.99808	other
CL2001032742AA (testset)	other	0.01846	0.98154	other
CL2001032746AA (testset)	other	0.01473	0.98527	other
CL2001032747AA (testset)	other	0.00153	0.99847	other
CL2001032833AA (testset)	other	0.00022	0.99978	other
CL2001032836AA	other	0.00418	0.99582	other
CL2001032838AA	other	0.00128	0.99872	other
CL2001032839AA	other	0.00065	0.99935	other
CL2001032841AA	other	0.00438	0.99562	other
CL2001032842AA	other	0.00068	0.99932	other
CL2001032843AA	other	0.00556	0.99444	other
CL2001032845AA (testset)	other	0.00114	0.99886	other
CL2001032846AA (testset)	other	0.00061	0.99939	other
CL2001032847AA (testset)	other	0.00093	0.99907	other
CL2001032848AA	other	0.00307	0.99693	other
CL2001032850AA	other	0.0018	0.9982	other
CL2001032853AA	SQUAMOUS	0.96964	0.03036	SQUAMOUS
CL2001032854AA	other	0.00223	0.99777	other
CL2001032856AA	other	0.00288	0.99712	other
CL2001032857AA	other	8e-05	0.99992	other
CL2001032860AA	other	0.01153	0.98847	other
CL2001040305AA	other	0.00147	0.99853	other
CL2001040306AA	other	0.00016	0.99984	other
CL2001041708AA (testset)	other	0.7831	0.2169	SQUAMOUS
CL2001041711AA	other	0.00072	0.99928	other
CL2001041716AA	other	0.00938	0.99062	other
CL2001042501AA	other	0.00049	0.99951	other
CL2001042505AA (testset)	other	0.03554	0.96446	other
CL2001042506AA	other	0.00218	0.99782	other