GO:0019735

GO:0019735

antimicrobial humoral response (sensu Vertebrata) (annotated genes)

Biological Process

Parent node

GO:0019735	antimicrobial humoral response (sensu Vertebrata)

This leaf node contains 88 genes

The following 71 of these are used in classification:

	Symbol	Genename	SQUAMOUS score	other score
41654_at	ADA	adenosine deaminase	0.8039	-0.093
891_at	YY1	YY1 transcription factor	0.7142	-0.0826
907_at	ADA	adenosine deaminase	0.6285	-0.0727
547_s_at	NR4A2	nuclear receptor subfamily 4, group A, member 2	-0.5848	0.0677
1544_at	BLM	Bloom syndrome	0.4645	-0.0537
34623_at	DEFA5	defensin, alpha 5, Paneth cell-specific	0.4642	-0.0537
38865_at	GRAP2	GRB2-related adaptor protein 2	-0.4467	0.0517
458_at	CCR6	chemokine (C-C motif) receptor 6	-0.4366	0.0505
40698_at	CLECSF2	C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 2 (activation-induced)	0.4006	-0.0464
39942_at	BATF	basic leucine zipper transcription factor, ATF-like	-0.3722	0.0431
37623_at	NR4A2	nuclear receptor subfamily 4, group A, member 2	-0.3678	0.0426
37149_s_at	CCR2	chemokine (C-C motif) receptor 2	0.3593	-0.0416
39062_at	PTE1	peroxisomal acyl-CoA thioesterase	-0.3501	0.0405
38647_at	COPE	coatomer protein complex, subunit epsilon	0.3334	-0.0386
31775_at	SFTPD	surfactant, pulmonary-associated protein D	-0.3153	0.0365
37479_at	CD72	CD72 antigen	-0.2968	0.0343
34102_at	LCN1	lipocalin 1 (tear prealbumin)	-0.2799	0.0324
40315_at	SPINK5	serine protease inhibitor, Kazal type, 5	0.2737	-0.0317
40385_at	CCL20	chemokine (C-C motif) ligand 20	0.219	-0.0253
820_at	MGST2	microsomal glutathione S-transferase 2	0.2163	-0.025
34602_at	FCN2	ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)	-0.2136	0.0247
35149_at	TNFRSF5	tumor necrosis factor receptor superfamily, member 5	0.2116	-0.0245
39802_at	CCL7	chemokine (C-C motif) ligand 7	-0.2054	0.0238
37177_at	CD58	CD58 antigen, (lymphocyte function-associated antigen 3)	0.2045	-0.0237
31916_at	KLRA1	killer cell lectin-like receptor subfamily A, member 1	-0.1947	0.0225
38755_at	FADD	Fas (TNFRSF6)-associated via death domain	0.189	-0.0219
39018_at	MGST3	microsomal glutathione S-transferase 3	-0.1755	0.0203
34622_at	DEFA6	defensin, alpha 6, Paneth cell-specific	0.1745	-0.0202
36103_at	CCL3	chemokine (C-C motif) ligand 3	-0.1737	0.0201
33531_at	KLRD1	killer cell lectin-like receptor subfamily D, member 1	-0.1732	0.02
33688_at	GBX2	gastrulation brain homeo box 2	-0.1708	0.0198
36724_s_at	CCR2	chemokine (C-C motif) receptor 2	-0.1678	0.0194
1999_s_at	MAPK14	mitogen-activated protein kinase 14	-0.1666	0.0193
33667_at	PPIA	peptidylprolyl isomerase A (cyclophilin A)	0.1618	-0.0187
33245_at	MAPK13	mitogen-activated protein kinase 13	0.1569	-0.0182
1066_at	IL12RB1	interleukin 12 receptor, beta 1	0.1475	-0.0171
39936_at	CCR2	chemokine (C-C motif) receptor 2	-0.1468	0.017
1010_at	MAPK11	mitogen-activated protein kinase 11	-0.1359	0.0157
37918_at	ITGB2	integrin, beta 2 (antigen CD18 (p95), lymphocyte function-associated antigen 1; macrophage antigen 1 (mac-1) beta subunit)	-0.135	0.0156
35150_at	TNFRSF5	tumor necrosis factor receptor superfamily, member 5	0.1331	-0.0154
34077_at	CXCR3	chemokine (C-X-C motif) receptor 3	0.1319	-0.0153
34434_at	CCL16	chemokine (C-C motif) ligand 16	-0.1296	0.015
34168_at	DNTT	deoxynucleotidyltransferase, terminal	-0.1116	0.0129
37494_at	CSF2RB	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	-0.1052	0.0122
38521_at	CD22	CD22 antigen	-0.1038	0.012
34041_at	CCL22	chemokine (C-C motif) ligand 22	0.1033	-0.012
38378_at	CD53	CD53 antigen	-0.1015	0.0117
160022_at	CSF1R	colony stimulating factor 1 receptor, formerly McDonough feline sarcoma viral (v-fms) oncogene homolog	-0.0932	0.0108
36841_at	PTE1	peroxisomal acyl-CoA thioesterase	-0.0916	0.0106
38642_at	ALCAM	activated leukocyte cell adhesion molecule	0.0908	-0.0105
38014_at	ADAR	adenosine deaminase, RNA-specific	0.088	-0.0102
39938_g_at	CCR2	chemokine (C-C motif) receptor 2	-0.0871	0.0101
1538_s_at	IL2	interleukin 2	-0.0698	0.0081
32128_at	CCL18	chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)	-0.0689	0.008
33983_at	IGSF2	immunoglobulin superfamily, member 2	-0.0681	0.0079
1671_s_at	MAPK14	mitogen-activated protein kinase 14	0.0669	-0.0077
38522_s_at	CD22	CD22 antigen	-0.0614	0.0071
33246_at	MAPK13	mitogen-activated protein kinase 13	-0.0483	0.0056
563_at	IL12B	interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40)	-0.0479	0.0055
39937_at	CCR2	chemokine (C-C motif) receptor 2	-0.0478	0.0055
33513_at	SLAMF1	signaling lymphocytic activation molecule family member 1	-0.0385	0.0045
1370_at	IL7R	interleukin 7 receptor	-0.0371	0.0043
1520_s_at	IL1B	interleukin 1, beta	0.0339	-0.0039
33209_at	YY1	YY1 transcription factor	0.0282	-0.0033
37422_at	PPIC	peptidylprolyl isomerase C (cyclophilin C)	0.0263	-0.003
32826_at	ENTPD1	ectonucleoside triphosphate diphosphohydrolase 1	0.0241	-0.0028
37835_at	CD1C	CD1C antigen, c polypeptide	-0.0227	0.0026
341_at	PTAFR	platelet-activating factor receptor	-0.0143	0.0017
33553_r_at	CCR6	chemokine (C-C motif) receptor 6	-0.0133	0.0015
37497_at	HHEX	hematopoietically expressed homeobox	0.0073	-8e-04
39192_at	TNFRSF17	tumor necrosis factor receptor superfamily, member 17	-0.0068	8e-04

Performance on training data

• Error rate: 0
• Performance: 0.11969
• Redundancy: 3.84389

	Sensitivity	Specificity
SQUAMOUS	1	1
other	1	1

Performance on test data

• Error rate: 0.04412
• Performance: 0.16784
• Redundancy: 4.12551

	Sensitivity	Specificity
SQUAMOUS	0.85714	0.96721
other	0.96721	0.85714

Predictions

	Class	SQUAMOUS	other	Predictionn
CL2001031606AA (testset)	SQUAMOUS	0.99995	5e-05	SQUAMOUS
CL2001031607AA	other	0.01017	0.98983	other
CL2001031608AA	other	0.00103	0.99897	other
CL2001031609AA (testset)	other	0.00022	0.99978	other
CL2001031611AA	other	0.06784	0.93216	other
CL2001031612AA (testset)	other	0.71533	0.28467	SQUAMOUS
CL2001031613AA (testset)	other	0.09282	0.90718	other
CL2001031615AA (testset)	other	0.00304	0.99696	other
CL2001031616AA	other	0.02837	0.97163	other
CL2001031618AA	other	0.00116	0.99884	other
CL2001031620AA	SQUAMOUS	0.63109	0.36891	SQUAMOUS
CL2001031621AA	SQUAMOUS	0.84283	0.15717	SQUAMOUS
CL2001031622AA	other	0.42775	0.57225	other
CL2001031625AA	other	0.00042	0.99958	other
CL2001031627AA (testset)	other	0.00387	0.99613	other
CL2001031628AA	other	0.00217	0.99783	other
CL2001031629AA	other	0.07748	0.92252	other
CL2001031630AA	other	0.00031	0.99969	other
CL2001031631AA (testset)	other	0.04109	0.95891	other
CL2001031632AA	other	0.01286	0.98714	other
CL2001031634AA	other	0.00021	0.99979	other
CL2001031635AA (testset)	other	0.00171	0.99829	other
CL2001031636AA (testset)	other	0.0292	0.9708	other
CL2001032002AA	other	8e-05	0.99992	other
CL2001032005AA	other	0.00107	0.99893	other
CL2001032008AA	other	0.00957	0.99043	other
CL2001032009AA	other	0.00895	0.99105	other
CL2001032010AA	other	0.00134	0.99866	other
CL2001032011AA	other	0.00218	0.99782	other
CL2001032012AA	other	0.0018	0.9982	other
CL2001032013AA	other	0.00281	0.99719	other
CL2001032015AA (testset)	other	0.00455	0.99545	other
CL2001032016AA (testset)	other	0.00212	0.99788	other
CL2001032019AA	other	0.00621	0.99379	other
CL2001032020AA (testset)	other	0.02501	0.97499	other
CL2001032025AA (testset)	other	0.00113	0.99887	other
CL2001032026AA	other	0.00063	0.99937	other
CL2001032027AA (testset)	other	0.07137	0.92863	other
CL2001032030AA (testset)	other	0.21189	0.78811	other
CL2001032031AA (testset)	other	0.01835	0.98165	other
CL2001032032AA	other	0.00023	0.99977	other
CL2001032034AA (testset)	other	0.01577	0.98423	other
CL2001032036AA	other	0.08983	0.91017	other
CL2001032041AA (testset)	other	0.00194	0.99806	other
CL2001032043AA	other	0.00217	0.99783	other
CL2001032044AA	other	0.00012	0.99988	other
CL2001032045AA (testset)	other	0.00031	0.99969	other
CL2001032046AA	other	0.00113	0.99887	other
CL2001032101AA	other	0.00064	0.99936	other
CL2001032102AA	other	0.00046	0.99954	other
CL2001032103AA	other	0.00034	0.99966	other
CL2001032104AA	other	0.00492	0.99508	other
CL2001032105AA	other	0.02081	0.97919	other
CL2001032107AA	other	0.00609	0.99391	other
CL2001032108AA (testset)	other	0.00353	0.99647	other
CL2001032109AA (testset)	other	0.00034	0.99966	other
CL2001032110AA	other	0.00141	0.99859	other
CL2001032111AA (testset)	other	0.00015	0.99985	other
CL2001032113AA	other	0.00049	0.99951	other
CL2001032114AA	other	0.00829	0.99171	other
CL2001032115AA	other	0.00057	0.99943	other
CL2001032116AA	other	0.00086	0.99914	other
CL2001032117AA (testset)	other	0.03031	0.96969	other
CL2001032121AA	other	0.05144	0.94856	other
CL2001032122AA	SQUAMOUS	0.9312	0.0688	SQUAMOUS
CL2001032124AA (testset)	other	0.00074	0.99926	other
CL2001032125AA	other	0.00034	0.99966	other
CL2001032127AA (testset)	other	0.00093	0.99907	other
CL2001032128AA (testset)	other	0.00281	0.99719	other
CL2001032129AA (testset)	SQUAMOUS	0.94591	0.05409	SQUAMOUS
CL2001032130AA	other	0.01594	0.98406	other
CL2001032132AA (testset)	other	0.00095	0.99905	other
CL2001032134AA	other	0.15068	0.84932	other
CL2001032135AA	other	0.08624	0.91376	other
CL2001032136AA (testset)	other	0.01211	0.98789	other
CL2001032138AA	other	0.00622	0.99378	other
CL2001032141AA	other	0.00124	0.99876	other
CL2001032142AA	other	0.01166	0.98834	other
CL2001032144AA	SQUAMOUS	0.9825	0.0175	SQUAMOUS
CL2001032145AA (testset)	other	2e-05	0.99998	other
CL2001032147AA (testset)	other	0.00662	0.99338	other
CL2001032149AA (testset)	other	0.11504	0.88496	other
CL2001032151AA (testset)	other	0.00197	0.99803	other
CL2001032152AA	other	2e-05	0.99998	other
CL2001032153AA (testset)	SQUAMOUS	0.6183	0.3817	SQUAMOUS
CL2001032155AA	other	0.03536	0.96464	other
CL2001032156AA	other	0.05141	0.94859	other
CL2001032202AA	other	0.00804	0.99196	other
CL2001032206AA (testset)	other	0.00091	0.99909	other
CL2001032207AA	SQUAMOUS	0.75776	0.24224	SQUAMOUS
CL2001032209AA (testset)	SQUAMOUS	0.81508	0.18492	SQUAMOUS
CL2001032210AA	other	0.00237	0.99763	other
CL2001032211AA (testset)	other	0.01741	0.98259	other
CL2001032212AA (testset)	other	0.00073	0.99927	other
CL2001032213AA	other	0.03739	0.96261	other
CL2001032214AA	other	0.05361	0.94639	other
CL2001032217AA (testset)	other	0.01687	0.98313	other
CL2001032218AA	SQUAMOUS	0.69391	0.30609	SQUAMOUS
CL2001032219AA	other	0.00093	0.99907	other
CL2001032220AA	other	0.00057	0.99943	other
CL2001032222AA	SQUAMOUS	0.74084	0.25916	SQUAMOUS
CL2001032229AA	other	0.00284	0.99716	other
CL2001032231AA	SQUAMOUS	0.53261	0.46739	SQUAMOUS
CL2001032232AA (testset)	other	0.00215	0.99785	other
CL2001032233AA	other	0.00463	0.99537	other
CL2001032238AA (testset)	other	0.00161	0.99839	other
CL2001032239AA	SQUAMOUS	0.99807	0.00193	SQUAMOUS
CL2001032240AA	SQUAMOUS	0.98442	0.01558	SQUAMOUS
CL2001032241AA	other	0.01066	0.98934	other
CL2001032242AA	other	0.02823	0.97177	other
CL2001032243AA (testset)	other	0.00239	0.99761	other
CL2001032248AA	other	0.04251	0.95749	other
CL2001032249AA	other	0.00099	0.99901	other
CL2001032252AA	other	0.44385	0.55615	other
CL2001032254AA (testset)	other	0.00013	0.99987	other
CL2001032255AA (testset)	other	0.00208	0.99792	other
CL2001032256AA	other	1e-04	0.9999	other
CL2001032259AA (testset)	other	0.02121	0.97879	other
CL2001032260AA (testset)	other	0.00076	0.99924	other
CL2001032301AA	other	0.23802	0.76198	other
CL2001032304AA	other	0.01539	0.98461	other
CL2001032305AA (testset)	SQUAMOUS	0.44817	0.55183	other
CL2001032306AA	other	0.13719	0.86281	other
CL2001032307AA	other	0.05711	0.94289	other
CL2001032308AA	other	0.00332	0.99668	other
CL2001032309AA	other	0.00139	0.99861	other
CL2001032310AA	other	0.00098	0.99902	other
CL2001032311AA	other	0.14573	0.85427	other
CL2001032312AA	other	0.00033	0.99967	other
CL2001032313AA	other	0.00525	0.99475	other
CL2001032314AA	other	0.00049	0.99951	other
CL2001032316AA	other	0.02122	0.97878	other
CL2001032601AA	other	0.02124	0.97876	other
CL2001032602AA (testset)	other	0.01323	0.98677	other
CL2001032604AA (testset)	other	0.00079	0.99921	other
CL2001032607AA (testset)	other	0.00431	0.99569	other
CL2001032608AA	SQUAMOUS	0.97418	0.02582	SQUAMOUS
CL2001032610AA	other	0.02506	0.97494	other
CL2001032612AA	other	3e-04	0.9997	other
CL2001032613AA	other	0.01474	0.98526	other
CL2001032614AA (testset)	other	0.00606	0.99394	other
CL2001032616AA	other	0.00281	0.99719	other
CL2001032617AA	other	0.14274	0.85726	other
CL2001032620AA	other	0.00328	0.99672	other
CL2001032625AA	other	0.00045	0.99955	other
CL2001032627AA	SQUAMOUS	0.94911	0.05089	SQUAMOUS
CL2001032628AA	other	0.01431	0.98569	other
CL2001032629AA (testset)	other	2e-05	0.99998	other
CL2001032630AA (testset)	other	0.01492	0.98508	other
CL2001032632AA	other	0.26603	0.73397	other
CL2001032638AA	other	0.03611	0.96389	other
CL2001032640AA	other	0.00043	0.99957	other
CL2001032643AA	other	0.07413	0.92587	other
CL2001032644AA (testset)	SQUAMOUS	0.56566	0.43434	SQUAMOUS
CL2001032647AA	other	0.00171	0.99829	other
CL2001032701AA	other	0.01215	0.98785	other
CL2001032702AA	other	0.162	0.838	other
CL2001032703AA	other	0.05504	0.94496	other
CL2001032704AA	other	0.03483	0.96517	other
CL2001032706AA	other	0.0282	0.9718	other
CL2001032709AA (testset)	other	0.021	0.979	other
CL2001032716AA	other	0.04081	0.95919	other
CL2001032717AA (testset)	other	0.00137	0.99863	other
CL2001032718AA	other	0.00799	0.99201	other
CL2001032719AA (testset)	SQUAMOUS	0.76699	0.23301	SQUAMOUS
CL2001032720AA	other	0.10517	0.89483	other
CL2001032722AA	other	0.00552	0.99448	other
CL2001032724AA	other	0.00359	0.99641	other
CL2001032725AA (testset)	other	0.00277	0.99723	other
CL2001032727AA	other	0.0041	0.9959	other
CL2001032729AA	other	0.00636	0.99364	other
CL2001032730AA	other	0.00673	0.99327	other
CL2001032732AA	SQUAMOUS	0.56204	0.43796	SQUAMOUS
CL2001032733AA (testset)	other	0.04982	0.95018	other
CL2001032738AA	other	0.20144	0.79856	other
CL2001032742AA (testset)	other	0.62348	0.37652	SQUAMOUS
CL2001032746AA (testset)	other	0.02224	0.97776	other
CL2001032747AA (testset)	other	0.02499	0.97501	other
CL2001032833AA (testset)	other	0.00013	0.99987	other
CL2001032836AA	other	0.41023	0.58977	other
CL2001032838AA	other	0.06496	0.93504	other
CL2001032839AA	other	0.01504	0.98496	other
CL2001032841AA	other	3e-05	0.99997	other
CL2001032842AA	other	0.0469	0.9531	other
CL2001032843AA	other	0.01564	0.98436	other
CL2001032845AA (testset)	other	0.00064	0.99936	other
CL2001032846AA (testset)	other	0.00033	0.99967	other
CL2001032847AA (testset)	other	0.00055	0.99945	other
CL2001032848AA	other	0.00503	0.99497	other
CL2001032850AA	other	0.00017	0.99983	other
CL2001032853AA	SQUAMOUS	0.83418	0.16582	SQUAMOUS
CL2001032854AA	other	0.00045	0.99955	other
CL2001032856AA	other	0.01312	0.98688	other
CL2001032857AA	other	0.00077	0.99923	other
CL2001032860AA	other	0.00029	0.99971	other
CL2001040305AA	other	0.00744	0.99256	other
CL2001040306AA	other	0.00094	0.99906	other
CL2001041708AA (testset)	other	0.00656	0.99344	other
CL2001041711AA	other	0.00023	0.99977	other
CL2001041716AA	other	0.00222	0.99778	other
CL2001042501AA	other	3e-05	0.99997	other
CL2001042505AA (testset)	other	0.09341	0.90659	other
CL2001042506AA	other	0.00104	0.99896	other