GO:0009653

GO:0009653

morphogenesis (annotated genes)

Biological Process

Parent node

GO:0009653	morphogenesis

This leaf node contains 99 genes

The following 99 of these are used in classification:

	Symbol	Genename	SQUAMOUS score	other score
38750_at	NOTCH3	Notch homolog 3 (Drosophila)	0.9995	-0.1156
37920_at	PITX1	paired-like homeodomain transcription factor 1	0.9352	-0.1082
38918_at	SOX13	SRY (sex determining region Y)-box 13	0.8644	-0.1
38439_at	NFE2L1	nuclear factor (erythroid-derived 2)-like 1	0.8559	-0.099
41869_at	PES1	pescadillo homolog 1, containing BRCT domain (zebrafish)	0.8171	-0.0945
34891_at	DNCL1	dynein, cytoplasmic, light polypeptide 1	0.7693	-0.089
36708_at	CPM	carboxypeptidase M	-0.702	0.0812
2050_s_at	RAC1	ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)	0.6156	-0.0712
34296_at	MID1	midline 1 (Opitz/BBB syndrome)	0.6148	-0.0711
34490_f_at	FSCN2	fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)	-0.6119	0.0708
41027_at	FOXC1	forkhead box C1	0.5802	-0.0671
41588_at	FGF18	fibroblast growth factor 18	-0.564	0.0653
32706_at	HIRA	HIR histone cell cycle regulation defective homolog A (S. cerevisiae)	0.5451	-0.0631
36370_at	FOXE1	forkhead box E1 (thyroid transcription factor 2)	0.5338	-0.0618
38181_at	MMP11	matrix metalloproteinase 11 (stromelysin 3)	0.4972	-0.0575
41586_at	FGF18	fibroblast growth factor 18	-0.4642	0.0537
31655_at	DNCL1	dynein, cytoplasmic, light polypeptide 1	0.4549	-0.0526
40864_at	RAC1	ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)	0.4412	-0.0511
205_g_at	HOXA4	homeo box A4	-0.4245	0.0491
36519_at	ERCC1	excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)	0.4117	-0.0476
1526_i_at	FGF8	fibroblast growth factor 8 (androgen-induced)	0.4057	-0.0469
33128_s_at	CST6	cystatin E/M	-0.3764	0.0435
38012_at	FBN2	fibrillin 2 (congenital contractural arachnodactyly)	0.3757	-0.0435
32521_at	SFRP1	secreted frizzled-related protein 1	0.371	-0.0429
40358_at	GLI3	GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome)	0.3513	-0.0406
1695_at	NEDD8	neural precursor cell expressed, developmentally down-regulated 8	0.3447	-0.0399
34335_at	EFNB2	ephrin-B2	0.3366	-0.0389
34058_at	ZNF141	zinc finger protein 141 (clone pHZ-44)	0.3139	-0.0363
31602_at	TBX6	T-box 6	-0.2937	0.034
40454_at	FAT	FAT tumor suppressor homolog 1 (Drosophila)	0.2889	-0.0334
37140_s_at	ED1	ectodermal dysplasia 1, anhidrotic	0.2833	-0.0328
35865_at	NR5A2	nuclear receptor subfamily 5, group A, member 2	-0.2787	0.0322
38772_at	CYR61	cysteine-rich, angiogenic inducer, 61	-0.2728	0.0316
797_at	MCAM	melanoma cell adhesion molecule	-0.2697	0.0312
163_at	DVL1	dishevelled, dsh homolog 1 (Drosophila)	-0.2687	0.0311
1887_g_at	WNT7A	wingless-type MMTV integration site family, member 7A	0.2679	-0.031
1525_s_at	FGF8	fibroblast growth factor 8 (androgen-induced)	-0.2644	0.0306
34251_at	HOXB5	homeo box B5	-0.2618	0.0303
39350_at	GPC3	glypican 3	0.2475	-0.0286
34488_i_at	FSCN2	fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)	-0.2438	0.0282
34489_f_at	FSCN2	fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)	0.2396	-0.0277
864_at	HLXB9	homeo box HB9	-0.2381	0.0276
34631_at	EYA4	eyes absent homolog 4 (Drosophila)	0.2317	-0.0268
1902_at	ERCC1	excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)	0.2229	-0.0258
34627_at	KRTHA5	keratin, hair, acidic, 5	-0.2178	0.0252
33558_at	TBX5	T-box 5	0.2176	-0.0252
1237_at	IER3	immediate early response 3	0.2036	-0.0236
36018_at	SOX10	SRY (sex determining region Y)-box 10	0.1967	-0.0228
31851_at	RFP2	ret finger protein 2	0.1908	-0.0221
41427_at	WNT11	wingless-type MMTV integration site family, member 11	-0.1884	0.0218
38988_at	WHSC1	Wolf-Hirschhorn syndrome candidate 1	0.1859	-0.0215
40393_at	HOXA4	homeo box A4	-0.1836	0.0212
34334_at	EFNB2	ephrin-B2	0.1789	-0.0207
37865_at	EDN3	endothelin 3	-0.1703	0.0197
33684_at	WNT2B	wingless-type MMTV integration site family, member 2B	0.1594	-0.0184
145_s_at	TBX5	T-box 5	-0.1564	0.0181
33770_at	CHUK	conserved helix-loop-helix ubiquitous kinase	-0.1509	0.0175
1878_g_at	ERCC1	excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)	0.15	-0.0174
36508_at	GPC4	glypican 4	-0.1455	0.0168
39297_at	MAB21L1	mab-21-like 1 (C. elegans)	0.14	-0.0162
39605_at	FOXG1B	forkhead box G1B	-0.1286	0.0149
31513_at	LBX1	transcription factor similar to D. melanogaster homeodomain protein lady bird late	0.1194	-0.0138
2030_at	WNT11	wingless-type MMTV integration site family, member 11	-0.1186	0.0137
41587_g_at	FGF18	fibroblast growth factor 18	-0.1109	0.0128
40445_at	ELF3	E74-like factor 3 (ets domain transcription factor, epithelial-specific )	-0.1099	0.0127
204_at	HOXA4	homeo box A4	-0.1075	0.0124
34986_at	EVA1	epithelial V-like antigen 1	0.0998	-0.0115
897_at	PKD1	polycystic kidney disease 1 (autosomal dominant)	0.0943	-0.0109
33565_at	TSHB	thyroid stimulating hormone, beta	0.0929	-0.0108
33248_at	HOXA11	homeo box A11	0.0862	-0.01
38959_s_at	CASR	calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)	-0.0842	0.0097
41700_at	F2R	coagulation factor II (thrombin) receptor	0.0839	-0.0097
33129_at	CST6	cystatin E/M	-0.0778	0.009
1855_at	FGF3	fibroblast growth factor 3 (murine mammary tumor virus integration site (v-int-2) oncogene homolog)	0.07	-0.0081
31549_at	MAS1	MAS1 oncogene	-0.0699	0.0081
31669_s_at	HOXA11	homeo box A11	-0.0663	0.0077
996_at	FGF1	fibroblast growth factor 1 (acidic)	-0.0608	0.007
38958_at	CASR	calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)	-0.0592	0.0069
37073_at	EYA1	eyes absent homolog 1 (Drosophila)	-0.051	0.0059
37139_at	ED1	ectodermal dysplasia 1, anhidrotic	-0.0455	0.0053
32474_at	PAX7	paired box gene 7	-0.0435	0.005
33330_at	CLTCL1	clathrin, heavy polypeptide-like 1	-0.0427	0.0049
36763_at	WNT7A	wingless-type MMTV integration site family, member 7A	0.0385	-0.0045
36693_at	EYA3	eyes absent homolog 3 (Drosophila)	-0.037	0.0043
160040_at	EDN3	endothelin 3	0.0357	-0.0041
121_at	PAX8	paired box gene 8	0.0335	-0.0039
380_at	TBX5	T-box 5	0.0293	-0.0034
36702_at	TBX19	T-box 19	0.0284	-0.0033
40511_at	GATA3	GATA binding protein 3	-0.0224	0.0026
39808_at	WNT11	wingless-type MMTV integration site family, member 11	0.0222	-0.0026
1853_at	WNT1	wingless-type MMTV integration site family, member 1	-0.0185	0.0021
40328_at	TWIST1	twist homolog 1 (acrocephalosyndactyly 3; Saethre-Chotzen syndrome) (Drosophila)	-0.0173	0.002
1886_at	WNT7A	wingless-type MMTV integration site family, member 7A	0.0156	-0.0018
32300_s_at	TH	tyrosine hydroxylase	0.0107	-0.0012
836_at	PTCH	patched homolog (Drosophila)	-0.0104	0.0012
40403_at	MYOC	myocilin, trabecular meshwork inducible glucocorticoid response	-0.0077	9e-04
36869_at	PAX8	paired box gene 8	0.0073	-8e-04
38214_at	PTCH	patched homolog (Drosophila)	-0.0053	6e-04
31620_at	TBX10	T-box 10	-0.0026	3e-04

Performance on training data

• Error rate: 0.03704
• Performance: 0.17743
• Redundancy: 4.65769

	Sensitivity	Specificity
SQUAMOUS	0.92857	0.96694
other	0.96694	0.92857

Performance on test data

• Error rate: 0.05882
• Performance: 0.22888
• Redundancy: 5.12204

	Sensitivity	Specificity
SQUAMOUS	0.71429	0.96721
other	0.96721	0.71429

Predictions

	Class	SQUAMOUS	other	Predictionn
CL2001031606AA (testset)	SQUAMOUS	0.41027	0.58973	other
CL2001031607AA	other	9e-05	0.99991	other
CL2001031608AA	other	0	1	other
CL2001031609AA (testset)	other	0.00039	0.99961	other
CL2001031611AA	other	0.02081	0.97919	other
CL2001031612AA (testset)	other	0.18346	0.81654	other
CL2001031613AA (testset)	other	0.90618	0.09382	SQUAMOUS
CL2001031615AA (testset)	other	0.00163	0.99837	other
CL2001031616AA	other	0.00965	0.99035	other
CL2001031618AA	other	0	1	other
CL2001031620AA	SQUAMOUS	0.79546	0.20454	SQUAMOUS
CL2001031621AA	SQUAMOUS	0.99716	0.00284	SQUAMOUS
CL2001031622AA	other	0.74125	0.25875	SQUAMOUS
CL2001031625AA	other	0	1	other
CL2001031627AA (testset)	other	3e-05	0.99997	other
CL2001031628AA	other	3e-05	0.99997	other
CL2001031629AA	other	0.42331	0.57669	other
CL2001031630AA	other	0	1	other
CL2001031631AA (testset)	other	3e-04	0.9997	other
CL2001031632AA	other	0.00016	0.99984	other
CL2001031634AA	other	1e-05	0.99999	other
CL2001031635AA (testset)	other	0	1	other
CL2001031636AA (testset)	other	0.04787	0.95213	other
CL2001032002AA	other	0	1	other
CL2001032005AA	other	2e-05	0.99998	other
CL2001032008AA	other	0.00924	0.99076	other
CL2001032009AA	other	2e-05	0.99998	other
CL2001032010AA	other	1e-05	0.99999	other
CL2001032011AA	other	1e-05	0.99999	other
CL2001032012AA	other	0	1	other
CL2001032013AA	other	1e-05	0.99999	other
CL2001032015AA (testset)	other	0.0293	0.9707	other
CL2001032016AA (testset)	other	0	1	other
CL2001032019AA	other	0.00579	0.99421	other
CL2001032020AA (testset)	other	8e-05	0.99992	other
CL2001032025AA (testset)	other	4e-05	0.99996	other
CL2001032026AA	other	0	1	other
CL2001032027AA (testset)	other	0.01672	0.98328	other
CL2001032030AA (testset)	other	0.00042	0.99958	other
CL2001032031AA (testset)	other	6e-04	0.9994	other
CL2001032032AA	other	0	1	other
CL2001032034AA (testset)	other	0.00204	0.99796	other
CL2001032036AA	other	0.59943	0.40057	SQUAMOUS
CL2001032041AA (testset)	other	0.00111	0.99889	other
CL2001032043AA	other	0.00654	0.99346	other
CL2001032044AA	other	9e-04	0.9991	other
CL2001032045AA (testset)	other	1e-05	0.99999	other
CL2001032046AA	other	4e-05	0.99996	other
CL2001032101AA	other	0.141	0.859	other
CL2001032102AA	other	6e-05	0.99994	other
CL2001032103AA	other	0	1	other
CL2001032104AA	other	4e-05	0.99996	other
CL2001032105AA	other	1e-05	0.99999	other
CL2001032107AA	other	6e-05	0.99994	other
CL2001032108AA (testset)	other	0	1	other
CL2001032109AA (testset)	other	0	1	other
CL2001032110AA	other	0.00018	0.99982	other
CL2001032111AA (testset)	other	0	1	other
CL2001032113AA	other	0	1	other
CL2001032114AA	other	1e-05	0.99999	other
CL2001032115AA	other	0	1	other
CL2001032116AA	other	0	1	other
CL2001032117AA (testset)	other	0.00057	0.99943	other
CL2001032121AA	other	0.00274	0.99726	other
CL2001032122AA	SQUAMOUS	0.99579	0.00421	SQUAMOUS
CL2001032124AA (testset)	other	0.0026	0.9974	other
CL2001032125AA	other	0.00065	0.99935	other
CL2001032127AA (testset)	other	2e-05	0.99998	other
CL2001032128AA (testset)	other	0.01595	0.98405	other
CL2001032129AA (testset)	SQUAMOUS	0.99995	5e-05	SQUAMOUS
CL2001032130AA	other	0.00033	0.99967	other
CL2001032132AA (testset)	other	3e-05	0.99997	other
CL2001032134AA	other	0.02921	0.97079	other
CL2001032135AA	other	0.01765	0.98235	other
CL2001032136AA (testset)	other	0.02271	0.97729	other
CL2001032138AA	other	0.00035	0.99965	other
CL2001032141AA	other	0.02627	0.97373	other
CL2001032142AA	other	0.14864	0.85136	other
CL2001032144AA	SQUAMOUS	0.99933	0.00067	SQUAMOUS
CL2001032145AA (testset)	other	4e-05	0.99996	other
CL2001032147AA (testset)	other	0.00067	0.99933	other
CL2001032149AA (testset)	other	0.56958	0.43042	SQUAMOUS
CL2001032151AA (testset)	other	9e-05	0.99991	other
CL2001032152AA	other	0	1	other
CL2001032153AA (testset)	SQUAMOUS	0.97214	0.02786	SQUAMOUS
CL2001032155AA	other	0.80114	0.19886	SQUAMOUS
CL2001032156AA	other	0.00828	0.99172	other
CL2001032202AA	other	0.00144	0.99856	other
CL2001032206AA (testset)	other	0.00049	0.99951	other
CL2001032207AA	SQUAMOUS	0.99991	9e-05	SQUAMOUS
CL2001032209AA (testset)	SQUAMOUS	0.99999	1e-05	SQUAMOUS
CL2001032210AA	other	0.00456	0.99544	other
CL2001032211AA (testset)	other	5e-05	0.99995	other
CL2001032212AA (testset)	other	0	1	other
CL2001032213AA	other	0.00474	0.99526	other
CL2001032214AA	other	0.04032	0.95968	other
CL2001032217AA (testset)	other	0	1	other
CL2001032218AA	SQUAMOUS	0.98461	0.01539	SQUAMOUS
CL2001032219AA	other	1e-05	0.99999	other
CL2001032220AA	other	0	1	other
CL2001032222AA	SQUAMOUS	0.99156	0.00844	SQUAMOUS
CL2001032229AA	other	0	1	other
CL2001032231AA	SQUAMOUS	0.85384	0.14616	SQUAMOUS
CL2001032232AA (testset)	other	1e-05	0.99999	other
CL2001032233AA	other	0	1	other
CL2001032238AA (testset)	other	0	1	other
CL2001032239AA	SQUAMOUS	0.9925	0.0075	SQUAMOUS
CL2001032240AA	SQUAMOUS	0.99868	0.00132	SQUAMOUS
CL2001032241AA	other	1e-05	0.99999	other
CL2001032242AA	other	0.00044	0.99956	other
CL2001032243AA (testset)	other	0	1	other
CL2001032248AA	other	0.00643	0.99357	other
CL2001032249AA	other	0	1	other
CL2001032252AA	other	0.96037	0.03963	SQUAMOUS
CL2001032254AA (testset)	other	0	1	other
CL2001032255AA (testset)	other	2e-05	0.99998	other
CL2001032256AA	other	6e-04	0.9994	other
CL2001032259AA (testset)	other	0.00025	0.99975	other
CL2001032260AA (testset)	other	0.00011	0.99989	other
CL2001032301AA	other	0.00258	0.99742	other
CL2001032304AA	other	0.00687	0.99313	other
CL2001032305AA (testset)	SQUAMOUS	0.03908	0.96092	other
CL2001032306AA	other	0.00254	0.99746	other
CL2001032307AA	other	0.0077	0.9923	other
CL2001032308AA	other	0.00046	0.99954	other
CL2001032309AA	other	0	1	other
CL2001032310AA	other	0	1	other
CL2001032311AA	other	0.06918	0.93082	other
CL2001032312AA	other	0	1	other
CL2001032313AA	other	2e-05	0.99998	other
CL2001032314AA	other	1e-05	0.99999	other
CL2001032316AA	other	0.00011	0.99989	other
CL2001032601AA	other	0.00013	0.99987	other
CL2001032602AA (testset)	other	0	1	other
CL2001032604AA (testset)	other	0	1	other
CL2001032607AA (testset)	other	2e-05	0.99998	other
CL2001032608AA	SQUAMOUS	0.99512	0.00488	SQUAMOUS
CL2001032610AA	other	0.00012	0.99988	other
CL2001032612AA	other	0	1	other
CL2001032613AA	other	4e-05	0.99996	other
CL2001032614AA (testset)	other	1e-05	0.99999	other
CL2001032616AA	other	0	1	other
CL2001032617AA	other	0.00164	0.99836	other
CL2001032620AA	other	0	1	other
CL2001032625AA	other	0	1	other
CL2001032627AA	SQUAMOUS	0.99989	0.00011	SQUAMOUS
CL2001032628AA	other	0	1	other
CL2001032629AA (testset)	other	0	1	other
CL2001032630AA (testset)	other	0.00222	0.99778	other
CL2001032632AA	other	0	1	other
CL2001032638AA	other	0.01023	0.98977	other
CL2001032640AA	other	0	1	other
CL2001032643AA	other	0.03148	0.96852	other
CL2001032644AA (testset)	SQUAMOUS	0.99894	0.00106	SQUAMOUS
CL2001032647AA	other	0	1	other
CL2001032701AA	other	0.00056	0.99944	other
CL2001032702AA	other	0.00287	0.99713	other
CL2001032703AA	other	0.01316	0.98684	other
CL2001032704AA	other	0.08291	0.91709	other
CL2001032706AA	other	0.00046	0.99954	other
CL2001032709AA (testset)	other	0.00034	0.99966	other
CL2001032716AA	other	0.04041	0.95959	other
CL2001032717AA (testset)	other	0	1	other
CL2001032718AA	other	6e-04	0.9994	other
CL2001032719AA (testset)	SQUAMOUS	0.99884	0.00116	SQUAMOUS
CL2001032720AA	other	0	1	other
CL2001032722AA	other	0.02066	0.97934	other
CL2001032724AA	other	1e-05	0.99999	other
CL2001032725AA (testset)	other	0.00012	0.99988	other
CL2001032727AA	other	2e-05	0.99998	other
CL2001032729AA	other	0	1	other
CL2001032730AA	other	7e-05	0.99993	other
CL2001032732AA	SQUAMOUS	0.04843	0.95157	other
CL2001032733AA (testset)	other	0	1	other
CL2001032738AA	other	0.00114	0.99886	other
CL2001032742AA (testset)	other	0.00172	0.99828	other
CL2001032746AA (testset)	other	0.01974	0.98026	other
CL2001032747AA (testset)	other	0.00039	0.99961	other
CL2001032833AA (testset)	other	0.00015	0.99985	other
CL2001032836AA	other	0.00236	0.99764	other
CL2001032838AA	other	0.03225	0.96775	other
CL2001032839AA	other	0.00015	0.99985	other
CL2001032841AA	other	0	1	other
CL2001032842AA	other	0.00025	0.99975	other
CL2001032843AA	other	0.00018	0.99982	other
CL2001032845AA (testset)	other	0	1	other
CL2001032846AA (testset)	other	0	1	other
CL2001032847AA (testset)	other	0.0074	0.9926	other
CL2001032848AA	other	0.00173	0.99827	other
CL2001032850AA	other	4e-05	0.99996	other
CL2001032853AA	SQUAMOUS	0.99921	0.00079	SQUAMOUS
CL2001032854AA	other	0	1	other
CL2001032856AA	other	0.00019	0.99981	other
CL2001032857AA	other	0	1	other
CL2001032860AA	other	0.00041	0.99959	other
CL2001040305AA	other	2e-05	0.99998	other
CL2001040306AA	other	0	1	other
CL2001041708AA (testset)	other	2e-05	0.99998	other
CL2001041711AA	other	0	1	other
CL2001041716AA	other	0	1	other
CL2001042501AA	other	0	1	other
CL2001042505AA (testset)	other	0	1	other
CL2001042506AA	other	0.00038	0.99962	other