GO:0007417

GO:0007417

central nervous system development (annotated genes)

Biological Process

Parent node

GO:0007417	central nervous system development

This leaf node contains 48 genes

The following 44 of these are used in classification:

	Symbol	Genename	SQUAMOUS score	other score
1364_at	PTPRZ1	protein tyrosine phosphatase, receptor-type, Z polypeptide 1	1.5637	-0.1809
34782_at	JARID2	Jumonji, AT rich interactive domain 2	1.0403	-0.1204
39159_at	SH3GL1	SH3-domain GRB2-like 1	0.7406	-0.0857
33357_at	NCKAP1	NCK-associated protein 1	0.7249	-0.0839
40350_at	ADAM23	a disintegrin and metalloproteinase domain 23	0.6884	-0.0797
37259_at	SERPINI1	serine (or cysteine) proteinase inhibitor, clade I (neuroserpin), member 1	0.454	-0.0525
35697_at	PTS	6-pyruvoyltetrahydropterin synthase	0.4232	-0.049
32076_at	DSCR1L1	Down syndrome critical region gene 1-like 1	-0.3653	0.0423
32115_r_at	ADORA2A	adenosine A2a receptor	0.3376	-0.0391
37580_at	SH3GL3	SH3-domain GRB2-like 3	0.3368	-0.039
40317_at	ACCN1	amiloride-sensitive cation channel 1, neuronal (degenerin)	0.3089	-0.0357
31355_at	ASCL2	achaete-scute complex-like 2 (Drosophila)	0.2597	-0.03
40902_at	WWP1	WW domain-containing protein 1	-0.2509	0.029
37868_s_at	MOG	myelin oligodendrocyte glycoprotein	-0.2358	0.0273
36363_at	UGT8	UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase)	0.2348	-0.0272
32114_s_at	ADORA2A	adenosine A2a receptor	-0.2212	0.0256
33086_at	PROP1	prophet of Pit1, paired-like homeodomain transcription factor	-0.213	0.0246
38957_at	DCAMKL1	doublecortin and CaM kinase-like 1	-0.2064	0.0239
40489_at	DRPLA	dentatorubral-pallidoluysian atrophy (atrophin-1)	0.2063	-0.0239
37576_at	PCP4	Purkinje cell protein 4	-0.1887	0.0218
38748_at	ADARB1	adenosine deaminase, RNA-specific, B1 (RED1 homolog rat)	-0.1817	0.021
32952_at	POU6F2	POU domain, class 6, transcription factor 2	-0.1636	0.0189
37287_at	NRCAM	neuronal cell adhesion molecule	-0.147	0.017
33005_at	AD7C-NTP	neuronal thread protein	0.1429	-0.0165
37554_at	KLK6	kallikrein 6 (neurosin, zyme)	0.1253	-0.0145
32951_g_at	POU6F2	POU domain, class 6, transcription factor 2	0.1187	-0.0137
865_at	RPS6KA3	ribosomal protein S6 kinase, 90kDa, polypeptide 3	-0.1153	0.0133
37286_at	NRCAM	neuronal cell adhesion molecule	0.115	-0.0133
35079_at	CNTN6	contactin 6	-0.1079	0.0125
32950_at	POU6F2	POU domain, class 6, transcription factor 2	0.0865	-0.01
784_g_at	WWP1	WW domain-containing protein 1	0.0857	-0.0099
37291_r_at	SNCA	synuclein, alpha (non A4 component of amyloid precursor)	-0.062	0.0072
33019_at	PARK2	Parkinson disease (autosomal recessive, juvenile) 2, parkin	-0.0593	0.0069
37288_g_at	NRCAM	neuronal cell adhesion molecule	0.0553	-0.0064
40378_at	SH3GL2	SH3-domain GRB2-like 2	-0.0358	0.0041
31658_at	NEUROG3	neurogenin 3	0.0338	-0.0039
35817_at	MBP	myelin basic protein	-0.0295	0.0034
31915_at	DRP2	dystrophin related protein 2	-0.0285	0.0033
33229_at	RPS6KA3	ribosomal protein S6 kinase, 90kDa, polypeptide 3	-0.027	0.0031
34652_at	NPAS1	neuronal PAS domain protein 1	0.0184	-0.0021
783_at	WWP1	WW domain-containing protein 1	0.0112	-0.0013
37867_at	MOG	myelin oligodendrocyte glycoprotein	-0.0075	9e-04
235_at	S100B	S100 calcium binding protein, beta (neural)	0.0063	-7e-04
41578_at	NHLH2	nescient helix loop helix 2	0.002	-2e-04

Performance on training data

• Error rate: 0.02963
• Performance: 0.16744
• Redundancy: 4.21993

	Sensitivity	Specificity
SQUAMOUS	0.78571	0.99174
other	0.99174	0.78571

Performance on test data

• Error rate: 0.02941
• Performance: 0.19627
• Redundancy: 4.53513

	Sensitivity	Specificity
SQUAMOUS	0.71429	1
other	1	0.71429

Predictions

	Class	SQUAMOUS	other	Predictionn
CL2001031606AA (testset)	SQUAMOUS	0.73782	0.26218	SQUAMOUS
CL2001031607AA	other	0.00666	0.99334	other
CL2001031608AA	other	0.00012	0.99988	other
CL2001031609AA (testset)	other	0.00921	0.99079	other
CL2001031611AA	other	0.00761	0.99239	other
CL2001031612AA (testset)	other	0.07628	0.92372	other
CL2001031613AA (testset)	other	0.02141	0.97859	other
CL2001031615AA (testset)	other	0.00111	0.99889	other
CL2001031616AA	other	0.01643	0.98357	other
CL2001031618AA	other	1e-04	0.9999	other
CL2001031620AA	SQUAMOUS	0.2223	0.7777	other
CL2001031621AA	SQUAMOUS	0.99885	0.00115	SQUAMOUS
CL2001031622AA	other	0.03246	0.96754	other
CL2001031625AA	other	0.00116	0.99884	other
CL2001031627AA (testset)	other	0.00089	0.99911	other
CL2001031628AA	other	2e-04	0.9998	other
CL2001031629AA	other	0.01948	0.98052	other
CL2001031630AA	other	0.00013	0.99987	other
CL2001031631AA (testset)	other	0.00311	0.99689	other
CL2001031632AA	other	0.01446	0.98554	other
CL2001031634AA	other	0.00019	0.99981	other
CL2001031635AA (testset)	other	0.00022	0.99978	other
CL2001031636AA (testset)	other	0.05664	0.94336	other
CL2001032002AA	other	0.00052	0.99948	other
CL2001032005AA	other	0.00118	0.99882	other
CL2001032008AA	other	0.02308	0.97692	other
CL2001032009AA	other	6e-05	0.99994	other
CL2001032010AA	other	0.00038	0.99962	other
CL2001032011AA	other	0.00294	0.99706	other
CL2001032012AA	other	4e-05	0.99996	other
CL2001032013AA	other	0.00022	0.99978	other
CL2001032015AA (testset)	other	0.00203	0.99797	other
CL2001032016AA (testset)	other	0.00029	0.99971	other
CL2001032019AA	other	0.00045	0.99955	other
CL2001032020AA (testset)	other	0.00128	0.99872	other
CL2001032025AA (testset)	other	0.00023	0.99977	other
CL2001032026AA	other	0.00091	0.99909	other
CL2001032027AA (testset)	other	0.01151	0.98849	other
CL2001032030AA (testset)	other	0.01305	0.98695	other
CL2001032031AA (testset)	other	0.00305	0.99695	other
CL2001032032AA	other	0.00019	0.99981	other
CL2001032034AA (testset)	other	0.00164	0.99836	other
CL2001032036AA	other	0.2023	0.7977	other
CL2001032041AA (testset)	other	0.0015	0.9985	other
CL2001032043AA	other	0.00157	0.99843	other
CL2001032044AA	other	0.00071	0.99929	other
CL2001032045AA (testset)	other	0.00093	0.99907	other
CL2001032046AA	other	0.00124	0.99876	other
CL2001032101AA	other	0.00279	0.99721	other
CL2001032102AA	other	0.00018	0.99982	other
CL2001032103AA	other	0.00013	0.99987	other
CL2001032104AA	other	0.00284	0.99716	other
CL2001032105AA	other	0.00204	0.99796	other
CL2001032107AA	other	0.00144	0.99856	other
CL2001032108AA (testset)	other	1e-05	0.99999	other
CL2001032109AA (testset)	other	0.00027	0.99973	other
CL2001032110AA	other	0.00114	0.99886	other
CL2001032111AA (testset)	other	0.00045	0.99955	other
CL2001032113AA	other	0.00018	0.99982	other
CL2001032114AA	other	0.00095	0.99905	other
CL2001032115AA	other	2e-04	0.9998	other
CL2001032116AA	other	0.00112	0.99888	other
CL2001032117AA (testset)	other	0.00132	0.99868	other
CL2001032121AA	other	0.01633	0.98367	other
CL2001032122AA	SQUAMOUS	0.79065	0.20935	SQUAMOUS
CL2001032124AA (testset)	other	0.00042	0.99958	other
CL2001032125AA	other	0.00184	0.99816	other
CL2001032127AA (testset)	other	0.00195	0.99805	other
CL2001032128AA (testset)	other	0.00075	0.99925	other
CL2001032129AA (testset)	SQUAMOUS	0.96683	0.03317	SQUAMOUS
CL2001032130AA	other	0.00299	0.99701	other
CL2001032132AA (testset)	other	0.00387	0.99613	other
CL2001032134AA	other	0.01706	0.98294	other
CL2001032135AA	other	0.00781	0.99219	other
CL2001032136AA (testset)	other	0.01078	0.98922	other
CL2001032138AA	other	0.00722	0.99278	other
CL2001032141AA	other	0.00595	0.99405	other
CL2001032142AA	other	0.40929	0.59071	other
CL2001032144AA	SQUAMOUS	0.88128	0.11872	SQUAMOUS
CL2001032145AA (testset)	other	0.00095	0.99905	other
CL2001032147AA (testset)	other	0.00079	0.99921	other
CL2001032149AA (testset)	other	0.0497	0.9503	other
CL2001032151AA (testset)	other	0.00586	0.99414	other
CL2001032152AA	other	0.00068	0.99932	other
CL2001032153AA (testset)	SQUAMOUS	0.99506	0.00494	SQUAMOUS
CL2001032155AA	other	0.23587	0.76413	other
CL2001032156AA	other	0.017	0.983	other
CL2001032202AA	other	0.00096	0.99904	other
CL2001032206AA (testset)	other	0.00139	0.99861	other
CL2001032207AA	SQUAMOUS	0.98431	0.01569	SQUAMOUS
CL2001032209AA (testset)	SQUAMOUS	0.99999	1e-05	SQUAMOUS
CL2001032210AA	other	0.00418	0.99582	other
CL2001032211AA (testset)	other	0.00334	0.99666	other
CL2001032212AA (testset)	other	0.00269	0.99731	other
CL2001032213AA	other	0.01125	0.98875	other
CL2001032214AA	other	0.00395	0.99605	other
CL2001032217AA (testset)	other	0.00319	0.99681	other
CL2001032218AA	SQUAMOUS	0.95123	0.04877	SQUAMOUS
CL2001032219AA	other	0.07661	0.92339	other
CL2001032220AA	other	0.00044	0.99956	other
CL2001032222AA	SQUAMOUS	0.48113	0.51887	other
CL2001032229AA	other	0.00031	0.99969	other
CL2001032231AA	SQUAMOUS	0.66794	0.33206	SQUAMOUS
CL2001032232AA (testset)	other	0.00021	0.99979	other
CL2001032233AA	other	0.00256	0.99744	other
CL2001032238AA (testset)	other	0.00015	0.99985	other
CL2001032239AA	SQUAMOUS	0.96752	0.03248	SQUAMOUS
CL2001032240AA	SQUAMOUS	0.9692	0.0308	SQUAMOUS
CL2001032241AA	other	0.00033	0.99967	other
CL2001032242AA	other	0.00366	0.99634	other
CL2001032243AA (testset)	other	0.00074	0.99926	other
CL2001032248AA	other	0.00314	0.99686	other
CL2001032249AA	other	0.00026	0.99974	other
CL2001032252AA	other	0.13839	0.86161	other
CL2001032254AA (testset)	other	0.0051	0.9949	other
CL2001032255AA (testset)	other	0.00162	0.99838	other
CL2001032256AA	other	0.00125	0.99875	other
CL2001032259AA (testset)	other	5e-04	0.9995	other
CL2001032260AA (testset)	other	0.00086	0.99914	other
CL2001032301AA	other	0.00528	0.99472	other
CL2001032304AA	other	0.00475	0.99525	other
CL2001032305AA (testset)	SQUAMOUS	0.07992	0.92008	other
CL2001032306AA	other	0.01685	0.98315	other
CL2001032307AA	other	0.00462	0.99538	other
CL2001032308AA	other	0.002	0.998	other
CL2001032309AA	other	4e-05	0.99996	other
CL2001032310AA	other	4e-04	0.9996	other
CL2001032311AA	other	0.00298	0.99702	other
CL2001032312AA	other	7e-05	0.99993	other
CL2001032313AA	other	0.00045	0.99955	other
CL2001032314AA	other	0.00023	0.99977	other
CL2001032316AA	other	0.00324	0.99676	other
CL2001032601AA	other	0.01597	0.98403	other
CL2001032602AA (testset)	other	0.00113	0.99887	other
CL2001032604AA (testset)	other	0.00038	0.99962	other
CL2001032607AA (testset)	other	0.00504	0.99496	other
CL2001032608AA	SQUAMOUS	0.99972	0.00028	SQUAMOUS
CL2001032610AA	other	0.00121	0.99879	other
CL2001032612AA	other	0.00033	0.99967	other
CL2001032613AA	other	0.00065	0.99935	other
CL2001032614AA (testset)	other	0.0083	0.9917	other
CL2001032616AA	other	0.00044	0.99956	other
CL2001032617AA	other	0.01449	0.98551	other
CL2001032620AA	other	0.00141	0.99859	other
CL2001032625AA	other	0.00071	0.99929	other
CL2001032627AA	SQUAMOUS	0.98771	0.01229	SQUAMOUS
CL2001032628AA	other	0.00015	0.99985	other
CL2001032629AA (testset)	other	0.00014	0.99986	other
CL2001032630AA (testset)	other	0.00231	0.99769	other
CL2001032632AA	other	0.00479	0.99521	other
CL2001032638AA	other	0.00383	0.99617	other
CL2001032640AA	other	0.00034	0.99966	other
CL2001032643AA	other	0.00677	0.99323	other
CL2001032644AA (testset)	SQUAMOUS	0.99892	0.00108	SQUAMOUS
CL2001032647AA	other	0.00023	0.99977	other
CL2001032701AA	other	0.00034	0.99966	other
CL2001032702AA	other	0.0023	0.9977	other
CL2001032703AA	other	0.00629	0.99371	other
CL2001032704AA	other	0.00399	0.99601	other
CL2001032706AA	other	0.00094	0.99906	other
CL2001032709AA (testset)	other	0.001	0.999	other
CL2001032716AA	other	0.65904	0.34096	SQUAMOUS
CL2001032717AA (testset)	other	0.00138	0.99862	other
CL2001032718AA	other	0.00382	0.99618	other
CL2001032719AA (testset)	SQUAMOUS	0.04007	0.95993	other
CL2001032720AA	other	0.00096	0.99904	other
CL2001032722AA	other	0.00071	0.99929	other
CL2001032724AA	other	0.00017	0.99983	other
CL2001032725AA (testset)	other	0.00024	0.99976	other
CL2001032727AA	other	0.00158	0.99842	other
CL2001032729AA	other	0.00066	0.99934	other
CL2001032730AA	other	0.00049	0.99951	other
CL2001032732AA	SQUAMOUS	0.0056	0.9944	other
CL2001032733AA (testset)	other	0.00078	0.99922	other
CL2001032738AA	other	0.00419	0.99581	other
CL2001032742AA (testset)	other	0.11041	0.88959	other
CL2001032746AA (testset)	other	0.00363	0.99637	other
CL2001032747AA (testset)	other	0.00526	0.99474	other
CL2001032833AA (testset)	other	0.00274	0.99726	other
CL2001032836AA	other	0.15148	0.84852	other
CL2001032838AA	other	0.02945	0.97055	other
CL2001032839AA	other	0.00062	0.99938	other
CL2001032841AA	other	1e-04	0.9999	other
CL2001032842AA	other	0.02727	0.97273	other
CL2001032843AA	other	0.00343	0.99657	other
CL2001032845AA (testset)	other	0.00018	0.99982	other
CL2001032846AA (testset)	other	0.00459	0.99541	other
CL2001032847AA (testset)	other	0.00134	0.99866	other
CL2001032848AA	other	0.00275	0.99725	other
CL2001032850AA	other	0.00061	0.99939	other
CL2001032853AA	SQUAMOUS	0.99652	0.00348	SQUAMOUS
CL2001032854AA	other	0.00367	0.99633	other
CL2001032856AA	other	0.00115	0.99885	other
CL2001032857AA	other	0.00024	0.99976	other
CL2001032860AA	other	0.01562	0.98438	other
CL2001040305AA	other	0.00147	0.99853	other
CL2001040306AA	other	0.00031	0.99969	other
CL2001041708AA (testset)	other	0.03927	0.96073	other
CL2001041711AA	other	9e-05	0.99991	other
CL2001041716AA	other	0.00073	0.99927	other
CL2001042501AA	other	4e-04	0.9996	other
CL2001042505AA (testset)	other	0.03684	0.96316	other
CL2001042506AA	other	0.01392	0.98608	other