GO:0006955

GO:0006955

immune response (annotated genes)

Biological Process

Parent node

GO:0006955	immune response

This leaf node contains 376 genes

The following 35 of these are used in classification:

	Symbol	Genename	SQUAMOUS score	other score
40926_at	BCAP31	B-cell receptor-associated protein 31	1.5672	-0.1813
1549_s_at	SERPINB4	serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 4	0.9448	-0.1093
37603_at	IL1RN	interleukin 1 receptor antagonist	0.8622	-0.0998
1715_at	TNFSF10	tumor necrosis factor (ligand) superfamily, member 10	0.5391	-0.0624
1456_s_at	IFI16	interferon, gamma-inducible protein 16	0.4074	-0.0471
34823_at	DPP4	dipeptidylpeptidase 4 (CD26, adenosine deaminase complexing protein 2)	-0.2834	0.0328
408_at	CXCL1	chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)	0.283	-0.0327
37668_at	C1QBP	complement component 1, q subcomponent binding protein	0.2602	-0.0301
40650_r_at	CRHR1	corticotropin releasing hormone receptor 1	-0.2454	0.0284
32793_at	TRB@	T cell receptor beta locus	-0.1829	0.0212
1008_f_at	PRKR	protein kinase, interferon-inducible double stranded RNA dependent	-0.1755	0.0203
39049_at	GPSM3	G-protein signalling modulator 3 (AGS3-like, C. elegans)	-0.1621	0.0188
35287_at	TNFSF13	tumor necrosis factor (ligand) superfamily, member 13	-0.1431	0.0166
37279_at	GEM	GTP binding protein overexpressed in skeletal muscle	-0.1168	0.0135
425_at	IFI27	interferon, alpha-inducible protein 27	0.1147	-0.0133
823_at	CX3CL1	chemokine (C-X3-C motif) ligand 1	0.103	-0.0119
32803_at	CNIH	cornichon homolog (Drosophila)	0.099	-0.0115
35410_at	CXCL6	chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)	0.0977	-0.0113
988_at	CEACAM1	carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)	-0.0851	0.0098
31431_at	FCGRT	Fc fragment of IgG, receptor, transporter, alpha	-0.0819	0.0095
36428_at	FTH1	ferritin, heavy polypeptide 1	-0.0809	0.0094
35842_at	IL6ST	interleukin 6 signal transducer (gp130, oncostatin M receptor)	-0.0794	0.0092
39263_at	OAS2	2'-5'-oligoadenylate synthetase 2, 69/71kDa	0.0576	-0.0067
37579_at	CYFIP2	cytoplasmic FMR1 interacting protein 2	-0.0512	0.0059
40667_at	CD6	CD6 antigen	-0.0404	0.0047
675_at	IFITM1	interferon induced transmembrane protein 1 (9-27)	0.0324	-0.0037
37187_at	CXCL2	chemokine (C-X-C motif) ligand 2	-0.0321	0.0037
31496_g_at	XCL2	chemokine (C motif) ligand 2	0.0282	-0.0033
39624_at	LTB4R	leukotriene B4 receptor	0.0257	-0.003
36189_at	ILF2	interleukin enhancer binding factor 2, 45kDa	0.0236	-0.0027
36789_f_at	LILRB5	leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 5	-0.013	0.0015
32205_at	PRKRA	protein kinase, interferon-inducible double stranded RNA dependent activator	0.0067	-8e-04
33227_at	IL10RB	interleukin 10 receptor, beta	-0.0057	7e-04
32377_at	IK	IK cytokine, down-regulator of HLA II	-0.003	4e-04
1984_s_at	ARHGDIB	Rho GDP dissociation inhibitor (GDI) beta	-0.0021	2e-04

Performance on training data

• Error rate: 0.03704
• Performance: 0.23074
• Redundancy: 4.03613

	Sensitivity	Specificity
SQUAMOUS	0.85714	0.97521
other	0.97521	0.85714

Performance on test data

• Error rate: 0.07353
• Performance: 0.27556
• Redundancy: 4.37965

	Sensitivity	Specificity
SQUAMOUS	0.42857	0.98361
other	0.98361	0.42857

Predictions

	Class	SQUAMOUS	other	Predictionn
CL2001031606AA (testset)	SQUAMOUS	0.2003	0.7997	other
CL2001031607AA	other	0.00427	0.99573	other
CL2001031608AA	other	0.00053	0.99947	other
CL2001031609AA (testset)	other	0.00027	0.99973	other
CL2001031611AA	other	0.02349	0.97651	other
CL2001031612AA (testset)	other	0.15277	0.84723	other
CL2001031613AA (testset)	other	0.01616	0.98384	other
CL2001031615AA (testset)	other	0.00943	0.99057	other
CL2001031616AA	other	0.00385	0.99615	other
CL2001031618AA	other	0.00046	0.99954	other
CL2001031620AA	SQUAMOUS	0.98665	0.01335	SQUAMOUS
CL2001031621AA	SQUAMOUS	0.95466	0.04534	SQUAMOUS
CL2001031622AA	other	0.04129	0.95871	other
CL2001031625AA	other	0.00025	0.99975	other
CL2001031627AA (testset)	other	0.00434	0.99566	other
CL2001031628AA	other	0.00272	0.99728	other
CL2001031629AA	other	0.96348	0.03652	SQUAMOUS
CL2001031630AA	other	0.00025	0.99975	other
CL2001031631AA (testset)	other	0.05039	0.94961	other
CL2001031632AA	other	0.02535	0.97465	other
CL2001031634AA	other	0.00071	0.99929	other
CL2001031635AA (testset)	other	7e-04	0.9993	other
CL2001031636AA (testset)	other	0.89308	0.10692	SQUAMOUS
CL2001032002AA	other	3e-04	0.9997	other
CL2001032005AA	other	0.00271	0.99729	other
CL2001032008AA	other	0.02869	0.97131	other
CL2001032009AA	other	0.00922	0.99078	other
CL2001032010AA	other	0.00277	0.99723	other
CL2001032011AA	other	0.01655	0.98345	other
CL2001032012AA	other	0.00062	0.99938	other
CL2001032013AA	other	0.0041	0.9959	other
CL2001032015AA (testset)	other	0.00394	0.99606	other
CL2001032016AA (testset)	other	0.00045	0.99955	other
CL2001032019AA	other	0.01315	0.98685	other
CL2001032020AA (testset)	other	0.00094	0.99906	other
CL2001032025AA (testset)	other	0.00153	0.99847	other
CL2001032026AA	other	0.00038	0.99962	other
CL2001032027AA (testset)	other	0.0087	0.9913	other
CL2001032030AA (testset)	other	0.00386	0.99614	other
CL2001032031AA (testset)	other	0.00222	0.99778	other
CL2001032032AA	other	9e-04	0.9991	other
CL2001032034AA (testset)	other	0.00144	0.99856	other
CL2001032036AA	other	0.00198	0.99802	other
CL2001032041AA (testset)	other	0.0067	0.9933	other
CL2001032043AA	other	0.00144	0.99856	other
CL2001032044AA	other	6e-04	0.9994	other
CL2001032045AA (testset)	other	0.00293	0.99707	other
CL2001032046AA	other	0.00124	0.99876	other
CL2001032101AA	other	0.00092	0.99908	other
CL2001032102AA	other	0.00193	0.99807	other
CL2001032103AA	other	0.00049	0.99951	other
CL2001032104AA	other	0.00311	0.99689	other
CL2001032105AA	other	0.00595	0.99405	other
CL2001032107AA	other	0.00046	0.99954	other
CL2001032108AA (testset)	other	0.00032	0.99968	other
CL2001032109AA (testset)	other	0.00057	0.99943	other
CL2001032110AA	other	0.00862	0.99138	other
CL2001032111AA (testset)	other	0.00406	0.99594	other
CL2001032113AA	other	0.00017	0.99983	other
CL2001032114AA	other	0.00264	0.99736	other
CL2001032115AA	other	0.00065	0.99935	other
CL2001032116AA	other	0.00052	0.99948	other
CL2001032117AA (testset)	other	0.00782	0.99218	other
CL2001032121AA	other	0.00082	0.99918	other
CL2001032122AA	SQUAMOUS	0.9999	1e-04	SQUAMOUS
CL2001032124AA (testset)	other	0.00028	0.99972	other
CL2001032125AA	other	0.00095	0.99905	other
CL2001032127AA (testset)	other	0.0014	0.9986	other
CL2001032128AA (testset)	other	0.00459	0.99541	other
CL2001032129AA (testset)	SQUAMOUS	0.55964	0.44036	SQUAMOUS
CL2001032130AA	other	0.0048	0.9952	other
CL2001032132AA (testset)	other	0.00026	0.99974	other
CL2001032134AA	other	0.01865	0.98135	other
CL2001032135AA	other	0.00419	0.99581	other
CL2001032136AA (testset)	other	0.04748	0.95252	other
CL2001032138AA	other	0.00716	0.99284	other
CL2001032141AA	other	0.00647	0.99353	other
CL2001032142AA	other	0.05345	0.94655	other
CL2001032144AA	SQUAMOUS	1	0	SQUAMOUS
CL2001032145AA (testset)	other	0.00047	0.99953	other
CL2001032147AA (testset)	other	0.00211	0.99789	other
CL2001032149AA (testset)	other	0.01043	0.98957	other
CL2001032151AA (testset)	other	0.00028	0.99972	other
CL2001032152AA	other	0.00089	0.99911	other
CL2001032153AA (testset)	SQUAMOUS	0.46022	0.53978	other
CL2001032155AA	other	0.13948	0.86052	other
CL2001032156AA	other	0.06448	0.93552	other
CL2001032202AA	other	0.00478	0.99522	other
CL2001032206AA (testset)	other	0.03651	0.96349	other
CL2001032207AA	SQUAMOUS	0.67973	0.32027	SQUAMOUS
CL2001032209AA (testset)	SQUAMOUS	0.99107	0.00893	SQUAMOUS
CL2001032210AA	other	0.00023	0.99977	other
CL2001032211AA (testset)	other	0.03233	0.96767	other
CL2001032212AA (testset)	other	0.00056	0.99944	other
CL2001032213AA	other	0.00444	0.99556	other
CL2001032214AA	other	0.00437	0.99563	other
CL2001032217AA (testset)	other	7e-04	0.9993	other
CL2001032218AA	SQUAMOUS	0.99127	0.00873	SQUAMOUS
CL2001032219AA	other	0.00042	0.99958	other
CL2001032220AA	other	0.00268	0.99732	other
CL2001032222AA	SQUAMOUS	0.99347	0.00653	SQUAMOUS
CL2001032229AA	other	0.00137	0.99863	other
CL2001032231AA	SQUAMOUS	0.98576	0.01424	SQUAMOUS
CL2001032232AA (testset)	other	0.00103	0.99897	other
CL2001032233AA	other	0.002	0.998	other
CL2001032238AA (testset)	other	0.00022	0.99978	other
CL2001032239AA	SQUAMOUS	0.49089	0.50911	other
CL2001032240AA	SQUAMOUS	0.98408	0.01592	SQUAMOUS
CL2001032241AA	other	0.00075	0.99925	other
CL2001032242AA	other	0.01424	0.98576	other
CL2001032243AA (testset)	other	0.00051	0.99949	other
CL2001032248AA	other	0.0342	0.9658	other
CL2001032249AA	other	0.00449	0.99551	other
CL2001032252AA	other	0.99164	0.00836	SQUAMOUS
CL2001032254AA (testset)	other	0.00111	0.99889	other
CL2001032255AA (testset)	other	0.01893	0.98107	other
CL2001032256AA	other	0.01199	0.98801	other
CL2001032259AA (testset)	other	0.01307	0.98693	other
CL2001032260AA (testset)	other	0.00221	0.99779	other
CL2001032301AA	other	0.01107	0.98893	other
CL2001032304AA	other	0.01381	0.98619	other
CL2001032305AA (testset)	SQUAMOUS	0.08662	0.91338	other
CL2001032306AA	other	0.08052	0.91948	other
CL2001032307AA	other	0.00397	0.99603	other
CL2001032308AA	other	0.0114	0.9886	other
CL2001032309AA	other	0.00025	0.99975	other
CL2001032310AA	other	0.0671	0.9329	other
CL2001032311AA	other	0.24582	0.75418	other
CL2001032312AA	other	0.00156	0.99844	other
CL2001032313AA	other	0.00158	0.99842	other
CL2001032314AA	other	0.00408	0.99592	other
CL2001032316AA	other	0.00929	0.99071	other
CL2001032601AA	other	0.00325	0.99675	other
CL2001032602AA (testset)	other	0.00031	0.99969	other
CL2001032604AA (testset)	other	0.00734	0.99266	other
CL2001032607AA (testset)	other	0.00024	0.99976	other
CL2001032608AA	SQUAMOUS	0.96099	0.03901	SQUAMOUS
CL2001032610AA	other	0.03451	0.96549	other
CL2001032612AA	other	0.00251	0.99749	other
CL2001032613AA	other	0.00187	0.99813	other
CL2001032614AA (testset)	other	0.00056	0.99944	other
CL2001032616AA	other	0.00076	0.99924	other
CL2001032617AA	other	0.00257	0.99743	other
CL2001032620AA	other	3e-04	0.9997	other
CL2001032625AA	other	0.00128	0.99872	other
CL2001032627AA	SQUAMOUS	0.99693	0.00307	SQUAMOUS
CL2001032628AA	other	7e-04	0.9993	other
CL2001032629AA (testset)	other	5e-05	0.99995	other
CL2001032630AA (testset)	other	0.00031	0.99969	other
CL2001032632AA	other	0.00117	0.99883	other
CL2001032638AA	other	0.02083	0.97917	other
CL2001032640AA	other	0.0042	0.9958	other
CL2001032643AA	other	0.00658	0.99342	other
CL2001032644AA (testset)	SQUAMOUS	0.33688	0.66312	other
CL2001032647AA	other	0.00486	0.99514	other
CL2001032701AA	other	0.00511	0.99489	other
CL2001032702AA	other	0.00274	0.99726	other
CL2001032703AA	other	0.01052	0.98948	other
CL2001032704AA	other	0.01063	0.98937	other
CL2001032706AA	other	0.00155	0.99845	other
CL2001032709AA (testset)	other	0.00322	0.99678	other
CL2001032716AA	other	0.01069	0.98931	other
CL2001032717AA (testset)	other	0.00149	0.99851	other
CL2001032718AA	other	0.00334	0.99666	other
CL2001032719AA (testset)	SQUAMOUS	0.94886	0.05114	SQUAMOUS
CL2001032720AA	other	9e-04	0.9991	other
CL2001032722AA	other	0.00018	0.99982	other
CL2001032724AA	other	0.00075	0.99925	other
CL2001032725AA (testset)	other	0.00334	0.99666	other
CL2001032727AA	other	0.00388	0.99612	other
CL2001032729AA	other	0.02021	0.97979	other
CL2001032730AA	other	0.00308	0.99692	other
CL2001032732AA	SQUAMOUS	0.01979	0.98021	other
CL2001032733AA (testset)	other	3e-04	0.9997	other
CL2001032738AA	other	0.01401	0.98599	other
CL2001032742AA (testset)	other	0.02072	0.97928	other
CL2001032746AA (testset)	other	0.00216	0.99784	other
CL2001032747AA (testset)	other	0.00245	0.99755	other
CL2001032833AA (testset)	other	0.00564	0.99436	other
CL2001032836AA	other	0.00622	0.99378	other
CL2001032838AA	other	0.0018	0.9982	other
CL2001032839AA	other	0.00188	0.99812	other
CL2001032841AA	other	0.00082	0.99918	other
CL2001032842AA	other	0.00107	0.99893	other
CL2001032843AA	other	0.00049	0.99951	other
CL2001032845AA (testset)	other	0.00047	0.99953	other
CL2001032846AA (testset)	other	0.00178	0.99822	other
CL2001032847AA (testset)	other	0.00042	0.99958	other
CL2001032848AA	other	0.01878	0.98122	other
CL2001032850AA	other	0.00052	0.99948	other
CL2001032853AA	SQUAMOUS	0.99264	0.00736	SQUAMOUS
CL2001032854AA	other	0.00034	0.99966	other
CL2001032856AA	other	0.00386	0.99614	other
CL2001032857AA	other	1e-04	0.9999	other
CL2001032860AA	other	0.00028	0.99972	other
CL2001040305AA	other	0.6221	0.3779	SQUAMOUS
CL2001040306AA	other	0.00195	0.99805	other
CL2001041708AA (testset)	other	0.00218	0.99782	other
CL2001041711AA	other	0.00014	0.99986	other
CL2001041716AA	other	0.0033	0.9967	other
CL2001042501AA	other	0.00014	0.99986	other
CL2001042505AA (testset)	other	0.00231	0.99769	other
CL2001042506AA	other	0.00367	0.99633	other