GO:0006950

GO:0006950

response to stress (annotated genes)

Biological Process

Parent node

GO:0006950	response to stress

This leaf node contains 85 genes

The following 67 of these are used in classification:

	Symbol	Genename	SQUAMOUS score	other score
35651_at	MAP3K4	mitogen-activated protein kinase kinase kinase 4	0.6632	-0.0767
35652_g_at	MAP3K4	mitogen-activated protein kinase kinase kinase 4	0.6388	-0.0739
40508_at	GSTA4	glutathione S-transferase A4	0.5874	-0.068
39833_at	MINK	misshapen/NIK-related kinase	0.5733	-0.0663
37035_at	SERP1	stress-associated endoplasmic reticulum protein 1	0.5306	-0.0614
33850_at	SUI1	putative translation initiation factor	-0.53	0.0613
39154_at	GADD45G	growth arrest and DNA-damage-inducible, gamma	-0.4999	0.0578
1039_s_at	HIF1A	hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)	0.4703	-0.0544
35694_at	MAP4K4	mitogen-activated protein kinase kinase kinase kinase 4	0.4421	-0.0512
38831_f_at	EPO	erythropoietin	0.4283	-0.0496
36136_at	TP53I11	tumor protein p53 inducible protein 11	-0.3924	0.0454
32680_at	TNIK	TRAF2 and NCK interacting kinase	-0.3734	0.0432
41432_at	RPS6KA5	ribosomal protein S6 kinase, 90kDa, polypeptide 5	0.3411	-0.0395
41444_at	MAP2K7	mitogen-activated protein kinase kinase 7	0.3358	-0.0389
973_at	SGK	serum/glucocorticoid regulated kinase	0.3333	-0.0386
33749_at	TP53AP1	TP53 activated protein 1	0.3283	-0.038
32894_at	EPO	erythropoietin	-0.2914	0.0337
37816_at	C5	complement component 5	-0.2483	0.0287
39166_s_at	SERPINH1	serine (or cysteine) proteinase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)	0.2463	-0.0285
38431_at	MAPK9	mitogen-activated protein kinase 9	-0.2418	0.028
1637_at	MAPKAPK3	mitogen-activated protein kinase-activated protein kinase 3	-0.2303	0.0266
40500_at	NDRG4	NDRG family member 4	0.2178	-0.0252
1991_s_at	MAPKAPK3	mitogen-activated protein kinase-activated protein kinase 3	-0.2062	0.0239
33641_g_at	AIF1	allograft inflammatory factor 1	-0.1751	0.0203
35299_at	MKNK1	MAP kinase-interacting serine/threonine kinase 1	0.1748	-0.0202
207_at	STIP1	stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein)	0.1729	-0.02
1238_at	MAPK9	mitogen-activated protein kinase 9	-0.1702	0.0197
39237_at	MAPKAPK3	mitogen-activated protein kinase-activated protein kinase 3	-0.1676	0.0194
33245_at	MAPK13	mitogen-activated protein kinase 13	0.161	-0.0186
1999_s_at	MAPK14	mitogen-activated protein kinase 14	-0.1596	0.0185
39167_r_at	SERPINH1	serine (or cysteine) proteinase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)	-0.1503	0.0174
40729_s_at	AIF1	allograft inflammatory factor 1	-0.1493	0.0173
40311_at	EPO	erythropoietin	-0.1489	0.0172
1010_at	MAPK11	mitogen-activated protein kinase 11	-0.1309	0.0151
1857_at	MADH7	MAD, mothers against decapentaplegic homolog 7 (Drosophila)	-0.1272	0.0147
38555_at	DUSP10	dual specificity phosphatase 10	0.1224	-0.0142
1023_at	EPO	erythropoietin	-0.1001	0.0116
37011_at	AIF1	allograft inflammatory factor 1	-0.0986	0.0114
449_at	CGRRF1	cell growth regulator with ring finger domain 1	-0.089	0.0103
37044_at	PDIR	for protein disulfide isomerase-related	0.0879	-0.0102
34006_s_at	MAPK8	mitogen-activated protein kinase 8	-0.0874	0.0101
31515_at	EPO	erythropoietin	-0.0779	0.009
36514_at	CGRRF1	cell growth regulator with ring finger domain 1	-0.0765	0.0088
35937_at	MICB	MHC class I polypeptide-related sequence B	0.0722	-0.0083
1671_s_at	MAPK14	mitogen-activated protein kinase 14	0.0715	-0.0083
33640_at	AIF1	allograft inflammatory factor 1	0.071	-0.0082
40966_at	STK39	serine threonine kinase 39 (STE20/SPS1 homolog, yeast)	-0.0707	0.0082
37796_at	EPO	erythropoietin	0.0661	-0.0076
470_at	CGREF1	cell growth regulator with EF hand domain 1	-0.0658	0.0076
38632_at	DNAJB5	DnaJ (Hsp40) homolog, subfamily B, member 5	-0.0651	0.0075
41141_at	PRKRIR	protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)	0.057	-0.0066
33246_at	MAPK13	mitogen-activated protein kinase 13	-0.0509	0.0059
39845_at	PRSS25	protease, serine, 25	-0.05	0.0058
40755_at	MICA	MHC class I polypeptide-related sequence A	-0.048	0.0056
976_s_at	MAPK1	mitogen-activated protein kinase 1	0.0391	-0.0045
40967_at	STK39	serine threonine kinase 39 (STE20/SPS1 homolog, yeast)	-0.0312	0.0036
40871_at	VHL	von Hippel-Lindau syndrome	-0.0296	0.0034
34629_at	TP53I11	tumor protein p53 inducible protein 11	0.029	-0.0034
2009_at	PTK2B	PTK2B protein tyrosine kinase 2 beta	-0.0282	0.0033
38832_r_at	EPO	erythropoietin	0.0228	-0.0026
33681_at	SERPINH1	serine (or cysteine) proteinase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)	-0.0179	0.0021
187_at	MAP4K2	mitogen-activated protein kinase kinase kinase kinase 2	-0.0171	0.002
541_g_at	HSPB2	heat shock 27kDa protein 2	-0.017	0.002
33363_at	HRI	heme-regulated initiation factor 2-alpha kinase	0.0157	-0.0018
41506_at	MAPKAPK5	mitogen-activated protein kinase-activated protein kinase 5	0.0151	-0.0017
442_at	TRA1	tumor rejection antigen (gp96) 1	0.0119	-0.0014
450_g_at	CGRRF1	cell growth regulator with ring finger domain 1	-0.0114	0.0013

Performance on training data

• Error rate: 0.02963
• Performance: 0.17557
• Redundancy: 3.73863

	Sensitivity	Specificity
SQUAMOUS	0.78571	0.99174
other	0.99174	0.78571

Performance on test data

• Error rate: 0.01471
• Performance: 0.13954
• Redundancy: 3.95916

	Sensitivity	Specificity
SQUAMOUS	0.85714	1
other	1	0.85714

Predictions

	Class	SQUAMOUS	other	Predictionn
CL2001031606AA (testset)	SQUAMOUS	0.86521	0.13479	SQUAMOUS
CL2001031607AA	other	0.03418	0.96582	other
CL2001031608AA	other	0.00406	0.99594	other
CL2001031609AA (testset)	other	0.00595	0.99405	other
CL2001031611AA	other	0.39117	0.60883	other
CL2001031612AA (testset)	other	0.08526	0.91474	other
CL2001031613AA (testset)	other	0.28831	0.71169	other
CL2001031615AA (testset)	other	0.00106	0.99894	other
CL2001031616AA	other	0.17672	0.82328	other
CL2001031618AA	other	6e-04	0.9994	other
CL2001031620AA	SQUAMOUS	0.63813	0.36187	SQUAMOUS
CL2001031621AA	SQUAMOUS	0.99584	0.00416	SQUAMOUS
CL2001031622AA	other	0.64269	0.35731	SQUAMOUS
CL2001031625AA	other	0.00166	0.99834	other
CL2001031627AA (testset)	other	0.00213	0.99787	other
CL2001031628AA	other	0.00066	0.99934	other
CL2001031629AA	other	0.00343	0.99657	other
CL2001031630AA	other	5e-05	0.99995	other
CL2001031631AA (testset)	other	0.00595	0.99405	other
CL2001031632AA	other	0.00174	0.99826	other
CL2001031634AA	other	0.00189	0.99811	other
CL2001031635AA (testset)	other	0.00088	0.99912	other
CL2001031636AA (testset)	other	0.09581	0.90419	other
CL2001032002AA	other	0.00026	0.99974	other
CL2001032005AA	other	0.00492	0.99508	other
CL2001032008AA	other	0.01446	0.98554	other
CL2001032009AA	other	0.00013	0.99987	other
CL2001032010AA	other	0.00057	0.99943	other
CL2001032011AA	other	0.00351	0.99649	other
CL2001032012AA	other	6e-04	0.9994	other
CL2001032013AA	other	0.00095	0.99905	other
CL2001032015AA (testset)	other	0.01164	0.98836	other
CL2001032016AA (testset)	other	0.00104	0.99896	other
CL2001032019AA	other	0.00493	0.99507	other
CL2001032020AA (testset)	other	0.01385	0.98615	other
CL2001032025AA (testset)	other	1e-04	0.9999	other
CL2001032026AA	other	0.00433	0.99567	other
CL2001032027AA (testset)	other	0.16002	0.83998	other
CL2001032030AA (testset)	other	0.01357	0.98643	other
CL2001032031AA (testset)	other	0.00236	0.99764	other
CL2001032032AA	other	0.00215	0.99785	other
CL2001032034AA (testset)	other	0.26292	0.73708	other
CL2001032036AA	other	0.01954	0.98046	other
CL2001032041AA (testset)	other	0.05667	0.94333	other
CL2001032043AA	other	0.14331	0.85669	other
CL2001032044AA	other	0.00209	0.99791	other
CL2001032045AA (testset)	other	0.02166	0.97834	other
CL2001032046AA	other	0.01477	0.98523	other
CL2001032101AA	other	0.02016	0.97984	other
CL2001032102AA	other	0.01218	0.98782	other
CL2001032103AA	other	0.00109	0.99891	other
CL2001032104AA	other	0.00418	0.99582	other
CL2001032105AA	other	6e-04	0.9994	other
CL2001032107AA	other	0.00058	0.99942	other
CL2001032108AA (testset)	other	0.00029	0.99971	other
CL2001032109AA (testset)	other	0.00321	0.99679	other
CL2001032110AA	other	0.00503	0.99497	other
CL2001032111AA (testset)	other	0.01662	0.98338	other
CL2001032113AA	other	9e-05	0.99991	other
CL2001032114AA	other	0.00112	0.99888	other
CL2001032115AA	other	0.00044	0.99956	other
CL2001032116AA	other	0.00314	0.99686	other
CL2001032117AA (testset)	other	0.00995	0.99005	other
CL2001032121AA	other	0.01646	0.98354	other
CL2001032122AA	SQUAMOUS	0.98162	0.01838	SQUAMOUS
CL2001032124AA (testset)	other	0.00485	0.99515	other
CL2001032125AA	other	0.01216	0.98784	other
CL2001032127AA (testset)	other	0.06087	0.93913	other
CL2001032128AA (testset)	other	0.1097	0.8903	other
CL2001032129AA (testset)	SQUAMOUS	0.97173	0.02827	SQUAMOUS
CL2001032130AA	other	0.02806	0.97194	other
CL2001032132AA (testset)	other	0.00334	0.99666	other
CL2001032134AA	other	0.11692	0.88308	other
CL2001032135AA	other	0.2591	0.7409	other
CL2001032136AA (testset)	other	0.05568	0.94432	other
CL2001032138AA	other	0.00229	0.99771	other
CL2001032141AA	other	0.00875	0.99125	other
CL2001032142AA	other	0.18701	0.81299	other
CL2001032144AA	SQUAMOUS	0.64352	0.35648	SQUAMOUS
CL2001032145AA (testset)	other	0.00696	0.99304	other
CL2001032147AA (testset)	other	0.02514	0.97486	other
CL2001032149AA (testset)	other	0.18357	0.81643	other
CL2001032151AA (testset)	other	0.00263	0.99737	other
CL2001032152AA	other	0.00295	0.99705	other
CL2001032153AA (testset)	SQUAMOUS	0.84681	0.15319	SQUAMOUS
CL2001032155AA	other	0.45357	0.54643	other
CL2001032156AA	other	0.04593	0.95407	other
CL2001032202AA	other	0.01616	0.98384	other
CL2001032206AA (testset)	other	0.01733	0.98267	other
CL2001032207AA	SQUAMOUS	0.90197	0.09803	SQUAMOUS
CL2001032209AA (testset)	SQUAMOUS	0.99665	0.00335	SQUAMOUS
CL2001032210AA	other	0.04944	0.95056	other
CL2001032211AA (testset)	other	0.07069	0.92931	other
CL2001032212AA (testset)	other	0.00131	0.99869	other
CL2001032213AA	other	0.22632	0.77368	other
CL2001032214AA	other	0.49594	0.50406	other
CL2001032217AA (testset)	other	0.0019	0.9981	other
CL2001032218AA	SQUAMOUS	0.92262	0.07738	SQUAMOUS
CL2001032219AA	other	0.01942	0.98058	other
CL2001032220AA	other	0.00134	0.99866	other
CL2001032222AA	SQUAMOUS	0.83147	0.16853	SQUAMOUS
CL2001032229AA	other	0.00112	0.99888	other
CL2001032231AA	SQUAMOUS	0.29893	0.70107	other
CL2001032232AA (testset)	other	0.00031	0.99969	other
CL2001032233AA	other	0.00422	0.99578	other
CL2001032238AA (testset)	other	9e-04	0.9991	other
CL2001032239AA	SQUAMOUS	0.44191	0.55809	other
CL2001032240AA	SQUAMOUS	0.72919	0.27081	SQUAMOUS
CL2001032241AA	other	0.00306	0.99694	other
CL2001032242AA	other	0.04348	0.95652	other
CL2001032243AA (testset)	other	0.00743	0.99257	other
CL2001032248AA	other	0.00072	0.99928	other
CL2001032249AA	other	0.00228	0.99772	other
CL2001032252AA	other	0.4456	0.5544	other
CL2001032254AA (testset)	other	2e-04	0.9998	other
CL2001032255AA (testset)	other	0.0025	0.9975	other
CL2001032256AA	other	0.00457	0.99543	other
CL2001032259AA (testset)	other	0.00119	0.99881	other
CL2001032260AA (testset)	other	0.00352	0.99648	other
CL2001032301AA	other	0.31493	0.68507	other
CL2001032304AA	other	0.01584	0.98416	other
CL2001032305AA (testset)	SQUAMOUS	0.12268	0.87732	other
CL2001032306AA	other	0.11204	0.88796	other
CL2001032307AA	other	0.02758	0.97242	other
CL2001032308AA	other	0.02208	0.97792	other
CL2001032309AA	other	0.00154	0.99846	other
CL2001032310AA	other	0.00112	0.99888	other
CL2001032311AA	other	0.01131	0.98869	other
CL2001032312AA	other	0.00197	0.99803	other
CL2001032313AA	other	0.00025	0.99975	other
CL2001032314AA	other	0.00065	0.99935	other
CL2001032316AA	other	0.00095	0.99905	other
CL2001032601AA	other	0.00804	0.99196	other
CL2001032602AA (testset)	other	0.00057	0.99943	other
CL2001032604AA (testset)	other	0.01937	0.98063	other
CL2001032607AA (testset)	other	0.00395	0.99605	other
CL2001032608AA	SQUAMOUS	0.95971	0.04029	SQUAMOUS
CL2001032610AA	other	0.01515	0.98485	other
CL2001032612AA	other	0.00313	0.99687	other
CL2001032613AA	other	0.00122	0.99878	other
CL2001032614AA (testset)	other	0.0022	0.9978	other
CL2001032616AA	other	0.00099	0.99901	other
CL2001032617AA	other	0.07938	0.92062	other
CL2001032620AA	other	0.00125	0.99875	other
CL2001032625AA	other	0.00054	0.99946	other
CL2001032627AA	SQUAMOUS	0.94653	0.05347	SQUAMOUS
CL2001032628AA	other	0.00091	0.99909	other
CL2001032629AA (testset)	other	0.00027	0.99973	other
CL2001032630AA (testset)	other	0.00568	0.99432	other
CL2001032632AA	other	0.01537	0.98463	other
CL2001032638AA	other	0.01004	0.98996	other
CL2001032640AA	other	0.00128	0.99872	other
CL2001032643AA	other	0.07641	0.92359	other
CL2001032644AA (testset)	SQUAMOUS	0.96354	0.03646	SQUAMOUS
CL2001032647AA	other	0.00493	0.99507	other
CL2001032701AA	other	5e-04	0.9995	other
CL2001032702AA	other	0.07923	0.92077	other
CL2001032703AA	other	0.04322	0.95678	other
CL2001032704AA	other	0.03401	0.96599	other
CL2001032706AA	other	0.02999	0.97001	other
CL2001032709AA (testset)	other	0.01008	0.98992	other
CL2001032716AA	other	0.15273	0.84727	other
CL2001032717AA (testset)	other	0.00077	0.99923	other
CL2001032718AA	other	0.09427	0.90573	other
CL2001032719AA (testset)	SQUAMOUS	0.84982	0.15018	SQUAMOUS
CL2001032720AA	other	0.00034	0.99966	other
CL2001032722AA	other	0.06158	0.93842	other
CL2001032724AA	other	0.00391	0.99609	other
CL2001032725AA (testset)	other	0.00338	0.99662	other
CL2001032727AA	other	0.04362	0.95638	other
CL2001032729AA	other	0.00639	0.99361	other
CL2001032730AA	other	0.00321	0.99679	other
CL2001032732AA	SQUAMOUS	0.25197	0.74803	other
CL2001032733AA (testset)	other	0.00427	0.99573	other
CL2001032738AA	other	0.00866	0.99134	other
CL2001032742AA (testset)	other	0.15285	0.84715	other
CL2001032746AA (testset)	other	0.01544	0.98456	other
CL2001032747AA (testset)	other	0.04962	0.95038	other
CL2001032833AA (testset)	other	0.00062	0.99938	other
CL2001032836AA	other	0.06447	0.93553	other
CL2001032838AA	other	0.0504	0.9496	other
CL2001032839AA	other	0.00231	0.99769	other
CL2001032841AA	other	0.00029	0.99971	other
CL2001032842AA	other	0.01148	0.98852	other
CL2001032843AA	other	0.00135	0.99865	other
CL2001032845AA (testset)	other	0.00045	0.99955	other
CL2001032846AA (testset)	other	0.01637	0.98363	other
CL2001032847AA (testset)	other	0.00918	0.99082	other
CL2001032848AA	other	0.02724	0.97276	other
CL2001032850AA	other	0.00206	0.99794	other
CL2001032853AA	SQUAMOUS	0.92641	0.07359	SQUAMOUS
CL2001032854AA	other	0.00029	0.99971	other
CL2001032856AA	other	0.00246	0.99754	other
CL2001032857AA	other	0.00033	0.99967	other
CL2001032860AA	other	0.00512	0.99488	other
CL2001040305AA	other	0.00047	0.99953	other
CL2001040306AA	other	0.00055	0.99945	other
CL2001041708AA (testset)	other	0.00115	0.99885	other
CL2001041711AA	other	0.00141	0.99859	other
CL2001041716AA	other	0.00425	0.99575	other
CL2001042501AA	other	9e-05	0.99991	other
CL2001042505AA (testset)	other	0.00313	0.99687	other
CL2001042506AA	other	0.02567	0.97433	other