GO:0006936

GO:0006936

muscle contraction (annotated genes)

Biological Process

Parent node

GO:0006936	muscle contraction

This leaf node contains 59 genes

The following 54 of these are used in classification:

	Symbol	Genename	SQUAMOUS score	other score
33642_s_at	SLC6A8	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	0.9596	-0.111
32243_g_at	CRYAB	crystallin, alpha B	0.606	-0.0701
32242_at	CRYAB	crystallin, alpha B	0.4977	-0.0576
39050_at	PABPN1	poly(A) binding protein, nuclear 1	0.4815	-0.0557
38975_at	GENX-3414	genethonin 1	-0.4614	0.0534
35239_at	EMD	emerin (Emery-Dreifuss muscular dystrophy)	0.452	-0.0523
39624_at	LTB4R	leukotriene B4 receptor	0.4473	-0.0518
37997_r_at	DMPK	dystrophia myotonica-protein kinase	-0.4253	0.0492
37529_at	CACNA1H	calcium channel, voltage-dependent, alpha 1H subunit	-0.3636	0.0421
36426_g_at	NEBL	nebulette	-0.3614	0.0418
36424_at	NEBL	nebulette	-0.3551	0.0411
33766_at	VIPR1	vasoactive intestinal peptide receptor 1	-0.3379	0.0391
32109_at	FXYD1	FXYD domain containing ion transport regulator 1 (phospholemman)	-0.334	0.0386
35027_at	CHRNB1	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	-0.3284	0.038
36989_at	DAG1	dystroglycan 1 (dystrophin-associated glycoprotein 1)	-0.31	0.0359
41738_at	CALD1	caldesmon 1	0.2412	-0.0279
38858_at	KCNH2	potassium voltage-gated channel, subfamily H (eag-related), member 2	-0.2316	0.0268
41730_at	MYL3	myosin, light polypeptide 3, alkali; ventricular, skeletal, slow	-0.2305	0.0267
33545_at	SCN4A	sodium channel, voltage-gated, type IV, alpha	-0.2299	0.0266
33939_at	KCNA1	potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)	-0.2156	0.0249
36425_at	NEBL	nebulette	-0.2155	0.0249
35335_at	ROCK2	Rho-associated, coiled-coil containing protein kinase 2	-0.1967	0.0228
34873_at	NEBL	nebulette	-0.1939	0.0224
31638_at	GAMT	guanidinoacetate N-methyltransferase	0.1836	-0.0212
40527_at	KCNQ1	potassium voltage-gated channel, KQT-like subfamily, member 1	-0.1793	0.0207
34143_at	CHRNA1	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	-0.1792	0.0207
38734_at	PLN	phospholamban	-0.1774	0.0205
33041_at	GJA7	gap junction protein, alpha 7, 45kDa (connexin 45)	0.1609	-0.0186
35627_at	SNTA1	syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)	-0.1562	0.0181
34678_at	FER1L3	fer-1-like 3, myoferlin (C. elegans)	0.1518	-0.0176
38225_at	KCNH2	potassium voltage-gated channel, subfamily H (eag-related), member 2	-0.1432	0.0166
355_s_at	FKBP1B	FK506 binding protein 1B, 12.6 kDa	-0.1362	0.0158
32920_at	HCN4	hyperpolarization activated cyclic nucleotide-gated potassium channel 4	-0.1302	0.0151
31554_at	CHRND	cholinergic receptor, nicotinic, delta polypeptide	-0.1224	0.0142
33303_at	SSPN	sarcospan (Kras oncogene-associated gene)	0.1188	-0.0137
39834_at	CHRNE	cholinergic receptor, nicotinic, epsilon polypeptide	-0.11	0.0127
37990_at	RYR1	ryanodine receptor 1 (skeletal)	0.1089	-0.0126
41739_s_at	CALD1	caldesmon 1	-0.1055	0.0122
336_at	TBXA2R	thromboxane A2 receptor	-0.1032	0.0119
33133_at	FLII	flightless I homolog (Drosophila)	-0.103	0.0119
31737_at	ACTA1	actin, alpha 1, skeletal muscle	-0.0919	0.0106
37996_s_at	DMPK	dystrophia myotonica-protein kinase	0.0884	-0.0102
32077_s_at	KCNQ1	potassium voltage-gated channel, KQT-like subfamily, member 1	-0.0837	0.0097
38263_at	RYR2	ryanodine receptor 2 (cardiac)	-0.0805	0.0093
33567_at	VIP	vasoactive intestinal peptide	0.0774	-0.009
32495_at	CLCN1	chloride channel 1, skeletal muscle (Thomsen disease, autosomal dominant)	-0.0739	0.0086
32496_at	KCNE1	potassium voltage-gated channel, Isk-related family, member 1	-0.0392	0.0045
41731_g_at	MYL3	myosin, light polypeptide 3, alkali; ventricular, skeletal, slow	-0.0352	0.0041
40488_at	DMD	dystrophin (muscular dystrophy, Duchenne and Becker types)	0.035	-0.0041
37592_at	CKMT2	creatine kinase, mitochondrial 2 (sarcomeric)	-0.0349	0.004
33302_at	SSPN	sarcospan (Kras oncogene-associated gene)	-0.0268	0.0031
37602_at	GAMT	guanidinoacetate N-methyltransferase	0.0144	-0.0017
40927_at	SLC6A8	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	0.0067	-8e-04
39063_at	ACTC	actin, alpha, cardiac muscle	0.0066	-8e-04

Performance on training data

• Error rate: 0.05926
• Performance: 0.22513
• Redundancy: 3.60238

	Sensitivity	Specificity
SQUAMOUS	0.5	0.99174
other	0.99174	0.5

Performance on test data

• Error rate: 0.04412
• Performance: 0.23927
• Redundancy: 3.91164

	Sensitivity	Specificity
SQUAMOUS	0.57143	1
other	1	0.57143

Predictions

	Class	SQUAMOUS	other	Predictionn
CL2001031606AA (testset)	SQUAMOUS	0.1363	0.8637	other
CL2001031607AA	other	0.13068	0.86932	other
CL2001031608AA	other	0.0211	0.9789	other
CL2001031609AA (testset)	other	0.00617	0.99383	other
CL2001031611AA	other	0.45797	0.54203	other
CL2001031612AA (testset)	other	0.09822	0.90178	other
CL2001031613AA (testset)	other	0.08411	0.91589	other
CL2001031615AA (testset)	other	0.01814	0.98186	other
CL2001031616AA	other	0.03642	0.96358	other
CL2001031618AA	other	0.00055	0.99945	other
CL2001031620AA	SQUAMOUS	0.48487	0.51513	other
CL2001031621AA	SQUAMOUS	0.74324	0.25676	SQUAMOUS
CL2001031622AA	other	0.09679	0.90321	other
CL2001031625AA	other	0.00245	0.99755	other
CL2001031627AA (testset)	other	0.00171	0.99829	other
CL2001031628AA	other	0.00102	0.99898	other
CL2001031629AA	other	0.06972	0.93028	other
CL2001031630AA	other	7e-04	0.9993	other
CL2001031631AA (testset)	other	0.02366	0.97634	other
CL2001031632AA	other	0.08718	0.91282	other
CL2001031634AA	other	0.00011	0.99989	other
CL2001031635AA (testset)	other	0.00697	0.99303	other
CL2001031636AA (testset)	other	0.11827	0.88173	other
CL2001032002AA	other	0.00053	0.99947	other
CL2001032005AA	other	0.00468	0.99532	other
CL2001032008AA	other	0.02376	0.97624	other
CL2001032009AA	other	0.03376	0.96624	other
CL2001032010AA	other	0.00139	0.99861	other
CL2001032011AA	other	0.00272	0.99728	other
CL2001032012AA	other	0.00233	0.99767	other
CL2001032013AA	other	0.0127	0.9873	other
CL2001032015AA (testset)	other	0.00743	0.99257	other
CL2001032016AA (testset)	other	0.00045	0.99955	other
CL2001032019AA	other	0.00477	0.99523	other
CL2001032020AA (testset)	other	0.00109	0.99891	other
CL2001032025AA (testset)	other	0.00218	0.99782	other
CL2001032026AA	other	0.01137	0.98863	other
CL2001032027AA (testset)	other	0.01651	0.98349	other
CL2001032030AA (testset)	other	0.02834	0.97166	other
CL2001032031AA (testset)	other	0.01079	0.98921	other
CL2001032032AA	other	0.00081	0.99919	other
CL2001032034AA (testset)	other	0.03768	0.96232	other
CL2001032036AA	other	0.39674	0.60326	other
CL2001032041AA (testset)	other	0.01008	0.98992	other
CL2001032043AA	other	0.00361	0.99639	other
CL2001032044AA	other	0.00029	0.99971	other
CL2001032045AA (testset)	other	0.00307	0.99693	other
CL2001032046AA	other	0.00271	0.99729	other
CL2001032101AA	other	0.00176	0.99824	other
CL2001032102AA	other	0.00197	0.99803	other
CL2001032103AA	other	0.00519	0.99481	other
CL2001032104AA	other	0.0023	0.9977	other
CL2001032105AA	other	0.00466	0.99534	other
CL2001032107AA	other	0.00891	0.99109	other
CL2001032108AA (testset)	other	0.00302	0.99698	other
CL2001032109AA (testset)	other	0.00119	0.99881	other
CL2001032110AA	other	0.00695	0.99305	other
CL2001032111AA (testset)	other	0.00132	0.99868	other
CL2001032113AA	other	9e-04	0.9991	other
CL2001032114AA	other	0.00758	0.99242	other
CL2001032115AA	other	0.00284	0.99716	other
CL2001032116AA	other	0.00138	0.99862	other
CL2001032117AA (testset)	other	0.00623	0.99377	other
CL2001032121AA	other	0.01101	0.98899	other
CL2001032122AA	SQUAMOUS	0.20145	0.79855	other
CL2001032124AA (testset)	other	1e-04	0.9999	other
CL2001032125AA	other	0.91954	0.08046	SQUAMOUS
CL2001032127AA (testset)	other	0.00243	0.99757	other
CL2001032128AA (testset)	other	0.00755	0.99245	other
CL2001032129AA (testset)	SQUAMOUS	0.88466	0.11534	SQUAMOUS
CL2001032130AA	other	0.01614	0.98386	other
CL2001032132AA (testset)	other	0.00596	0.99404	other
CL2001032134AA	other	0.03829	0.96171	other
CL2001032135AA	other	0.05087	0.94913	other
CL2001032136AA (testset)	other	0.02599	0.97401	other
CL2001032138AA	other	0.01444	0.98556	other
CL2001032141AA	other	0.01373	0.98627	other
CL2001032142AA	other	0.04649	0.95351	other
CL2001032144AA	SQUAMOUS	0.92938	0.07062	SQUAMOUS
CL2001032145AA (testset)	other	0.00085	0.99915	other
CL2001032147AA (testset)	other	0.00516	0.99484	other
CL2001032149AA (testset)	other	0.06649	0.93351	other
CL2001032151AA (testset)	other	0.00303	0.99697	other
CL2001032152AA	other	0.00247	0.99753	other
CL2001032153AA (testset)	SQUAMOUS	0.42006	0.57994	other
CL2001032155AA	other	0.21115	0.78885	other
CL2001032156AA	other	0.02942	0.97058	other
CL2001032202AA	other	0.00214	0.99786	other
CL2001032206AA (testset)	other	0.02327	0.97673	other
CL2001032207AA	SQUAMOUS	0.40206	0.59794	other
CL2001032209AA (testset)	SQUAMOUS	0.98564	0.01436	SQUAMOUS
CL2001032210AA	other	0.00063	0.99937	other
CL2001032211AA (testset)	other	0.00787	0.99213	other
CL2001032212AA (testset)	other	0.00478	0.99522	other
CL2001032213AA	other	0.06541	0.93459	other
CL2001032214AA	other	0.04353	0.95647	other
CL2001032217AA (testset)	other	0.00688	0.99312	other
CL2001032218AA	SQUAMOUS	0.34997	0.65003	other
CL2001032219AA	other	0.00188	0.99812	other
CL2001032220AA	other	0.00409	0.99591	other
CL2001032222AA	SQUAMOUS	0.64741	0.35259	SQUAMOUS
CL2001032229AA	other	0.00334	0.99666	other
CL2001032231AA	SQUAMOUS	0.44041	0.55959	other
CL2001032232AA (testset)	other	0.00078	0.99922	other
CL2001032233AA	other	0.00394	0.99606	other
CL2001032238AA (testset)	other	0.00026	0.99974	other
CL2001032239AA	SQUAMOUS	0.33866	0.66134	other
CL2001032240AA	SQUAMOUS	0.7393	0.2607	SQUAMOUS
CL2001032241AA	other	0.00116	0.99884	other
CL2001032242AA	other	0.02478	0.97522	other
CL2001032243AA (testset)	other	0.00439	0.99561	other
CL2001032248AA	other	0.00193	0.99807	other
CL2001032249AA	other	0.00114	0.99886	other
CL2001032252AA	other	0.22794	0.77206	other
CL2001032254AA (testset)	other	0.00133	0.99867	other
CL2001032255AA (testset)	other	0.01054	0.98946	other
CL2001032256AA	other	0.00664	0.99336	other
CL2001032259AA (testset)	other	0.21106	0.78894	other
CL2001032260AA (testset)	other	0.03106	0.96894	other
CL2001032301AA	other	0.03994	0.96006	other
CL2001032304AA	other	0.00736	0.99264	other
CL2001032305AA (testset)	SQUAMOUS	0.04885	0.95115	other
CL2001032306AA	other	0.02293	0.97707	other
CL2001032307AA	other	0.02441	0.97559	other
CL2001032308AA	other	0.02405	0.97595	other
CL2001032309AA	other	0.00296	0.99704	other
CL2001032310AA	other	0.00937	0.99063	other
CL2001032311AA	other	0.00801	0.99199	other
CL2001032312AA	other	0.01118	0.98882	other
CL2001032313AA	other	0.01726	0.98274	other
CL2001032314AA	other	0.00645	0.99355	other
CL2001032316AA	other	0.00477	0.99523	other
CL2001032601AA	other	0.00419	0.99581	other
CL2001032602AA (testset)	other	0.00446	0.99554	other
CL2001032604AA (testset)	other	0.00881	0.99119	other
CL2001032607AA (testset)	other	0.00182	0.99818	other
CL2001032608AA	SQUAMOUS	0.68913	0.31087	SQUAMOUS
CL2001032610AA	other	0.00492	0.99508	other
CL2001032612AA	other	0.01355	0.98645	other
CL2001032613AA	other	0.00559	0.99441	other
CL2001032614AA (testset)	other	0.04817	0.95183	other
CL2001032616AA	other	0.01424	0.98576	other
CL2001032617AA	other	0.02661	0.97339	other
CL2001032620AA	other	0.00477	0.99523	other
CL2001032625AA	other	0.00412	0.99588	other
CL2001032627AA	SQUAMOUS	0.97278	0.02722	SQUAMOUS
CL2001032628AA	other	0.00315	0.99685	other
CL2001032629AA (testset)	other	0.00069	0.99931	other
CL2001032630AA (testset)	other	0.00069	0.99931	other
CL2001032632AA	other	0.01605	0.98395	other
CL2001032638AA	other	0.0015	0.9985	other
CL2001032640AA	other	0.0061	0.9939	other
CL2001032643AA	other	0.02115	0.97885	other
CL2001032644AA (testset)	SQUAMOUS	0.79582	0.20418	SQUAMOUS
CL2001032647AA	other	0.0055	0.9945	other
CL2001032701AA	other	0.00556	0.99444	other
CL2001032702AA	other	0.00685	0.99315	other
CL2001032703AA	other	0.01625	0.98375	other
CL2001032704AA	other	0.16886	0.83114	other
CL2001032706AA	other	0.00656	0.99344	other
CL2001032709AA (testset)	other	0.06566	0.93434	other
CL2001032716AA	other	0.07316	0.92684	other
CL2001032717AA (testset)	other	0.00221	0.99779	other
CL2001032718AA	other	0.00794	0.99206	other
CL2001032719AA (testset)	SQUAMOUS	0.57776	0.42224	SQUAMOUS
CL2001032720AA	other	0.02012	0.97988	other
CL2001032722AA	other	0.00143	0.99857	other
CL2001032724AA	other	0.00295	0.99705	other
CL2001032725AA (testset)	other	0.00184	0.99816	other
CL2001032727AA	other	0.00691	0.99309	other
CL2001032729AA	other	0.0098	0.9902	other
CL2001032730AA	other	0.01641	0.98359	other
CL2001032732AA	SQUAMOUS	0.25154	0.74846	other
CL2001032733AA (testset)	other	0.00083	0.99917	other
CL2001032738AA	other	0.02839	0.97161	other
CL2001032742AA (testset)	other	0.0793	0.9207	other
CL2001032746AA (testset)	other	0.00694	0.99306	other
CL2001032747AA (testset)	other	0.0241	0.9759	other
CL2001032833AA (testset)	other	0.0049	0.9951	other
CL2001032836AA	other	0.04673	0.95327	other
CL2001032838AA	other	0.03664	0.96336	other
CL2001032839AA	other	0.01388	0.98612	other
CL2001032841AA	other	0.00061	0.99939	other
CL2001032842AA	other	0.01566	0.98434	other
CL2001032843AA	other	0.00738	0.99262	other
CL2001032845AA (testset)	other	0.01199	0.98801	other
CL2001032846AA (testset)	other	0.02438	0.97562	other
CL2001032847AA (testset)	other	0.00086	0.99914	other
CL2001032848AA	other	0.01915	0.98085	other
CL2001032850AA	other	0.00015	0.99985	other
CL2001032853AA	SQUAMOUS	0.99913	0.00087	SQUAMOUS
CL2001032854AA	other	0.00246	0.99754	other
CL2001032856AA	other	0.0108	0.9892	other
CL2001032857AA	other	0.0038	0.9962	other
CL2001032860AA	other	0.01388	0.98612	other
CL2001040305AA	other	0.07471	0.92529	other
CL2001040306AA	other	0.00172	0.99828	other
CL2001041708AA (testset)	other	0.03245	0.96755	other
CL2001041711AA	other	0.00117	0.99883	other
CL2001041716AA	other	0.00228	0.99772	other
CL2001042501AA	other	0.00077	0.99923	other
CL2001042505AA (testset)	other	0.01003	0.98997	other
CL2001042506AA	other	0.01282	0.98718	other