GO:0006915

GO:0006915

apoptosis (annotated genes)

Biological Process

Parent node

GO:0006915	apoptosis

This leaf node contains 200 genes

The following 29 of these are used in classification:

	Symbol	Genename	SQUAMOUS score	other score
31791_at	TP73L	tumor protein p73-like	2.6777	-0.3098
40926_at	BCAP31	B-cell receptor-associated protein 31	1.5535	-0.1797
1715_at	TNFSF10	tumor necrosis factor (ligand) superfamily, member 10	0.5213	-0.0603
1998_i_at	BAX	BCL2-associated X protein	-0.4654	0.0538
1673_at	NGFR	nerve growth factor receptor (TNFR superfamily, member 16)	0.4551	-0.0527
1558_g_at	PAK1	p21/Cdc42/Rac1-activated kinase 1 (STE20 homolog, yeast)	0.4067	-0.0471
38804_at	CSE1L	CSE1 chromosome segregation 1-like (yeast)	0.3944	-0.0456
41763_g_at	TIAL1	TIA1 cytotoxic granule-associated RNA binding protein-like 1	0.3357	-0.0388
1557_at	PAK1	p21/Cdc42/Rac1-activated kinase 1 (STE20 homolog, yeast)	0.3019	-0.0349
33357_at	NCKAP1	NCK-associated protein 1	0.2832	-0.0328
38405_at	FXR1	fragile X mental retardation, autosomal homolog 1	0.2748	-0.0318
39020_at	SIVA	CD27-binding (Siva) protein	0.2287	-0.0265
114_r_at	MAPT	microtubule-associated protein tau	-0.2236	0.0259
36463_at	BAG5	BCL2-associated athanogene 5	0.1651	-0.0191
1008_f_at	PRKR	protein kinase, interferon-inducible double stranded RNA dependent	-0.1575	0.0182
39154_at	GADD45G	growth arrest and DNA-damage-inducible, gamma	-0.1311	0.0152
41762_at	TIAL1	TIA1 cytotoxic granule-associated RNA binding protein-like 1	0.0943	-0.0109
38158_at	ESPL1	extra spindle poles like 1 (S. cerevisiae)	0.0915	-0.0106
32060_at	BNIP2	BCL2/adenovirus E1B 19kDa interacting protein 2	0.0821	-0.0095
40621_at	PAWR	PRKC, apoptosis, WT1, regulator	0.0779	-0.009
1939_at	TP53	tumor protein p53 (Li-Fraumeni syndrome)	0.0682	-0.0079
33884_s_at	UBE4B	ubiquitination factor E4B (UFD2 homolog, yeast)	0.06	-0.0069
40049_at	DAPK1	death-associated protein kinase 1	-0.0437	0.0051
41560_at	PDCD2	programmed cell death 2	-0.0413	0.0048
37569_at	PDCD6	programmed cell death 6	0.032	-0.0037
34740_at	FOXO3A	forkhead box O3A	0.0238	-0.0028
41161_at	DAXX	death-associated protein 6	0.014	-0.0016
38921_at	PDE1B	phosphodiesterase 1B, calmodulin-dependent	-0.0133	0.0015
37057_s_at	TRAF3	TNF receptor-associated factor 3	0.0081	-9e-04

Performance on training data

• Error rate: 0.02963
• Performance: 0.23028
• Redundancy: 4.81569

	Sensitivity	Specificity
SQUAMOUS	0.85714	0.98347
other	0.98347	0.85714

Performance on test data

• Error rate: 0.01471
• Performance: 0.08115
• Redundancy: 5.41334

	Sensitivity	Specificity
SQUAMOUS	0.85714	1
other	1	0.85714

Predictions

	Class	SQUAMOUS	other	Predictionn
CL2001031606AA (testset)	SQUAMOUS	0.06889	0.93111	other
CL2001031607AA	other	0.00047	0.99953	other
CL2001031608AA	other	1e-05	0.99999	other
CL2001031609AA (testset)	other	1e-05	0.99999	other
CL2001031611AA	other	0.00018	0.99982	other
CL2001031612AA (testset)	other	0.00449	0.99551	other
CL2001031613AA (testset)	other	0.00456	0.99544	other
CL2001031615AA (testset)	other	4e-05	0.99996	other
CL2001031616AA	other	0.00019	0.99981	other
CL2001031618AA	other	0	1	other
CL2001031620AA	SQUAMOUS	1	0	SQUAMOUS
CL2001031621AA	SQUAMOUS	0.99999	1e-05	SQUAMOUS
CL2001031622AA	other	0.00131	0.99869	other
CL2001031625AA	other	1e-05	0.99999	other
CL2001031627AA (testset)	other	2e-05	0.99998	other
CL2001031628AA	other	0	1	other
CL2001031629AA	other	0.97524	0.02476	SQUAMOUS
CL2001031630AA	other	0	1	other
CL2001031631AA (testset)	other	9e-05	0.99991	other
CL2001031632AA	other	0.00011	0.99989	other
CL2001031634AA	other	0	1	other
CL2001031635AA (testset)	other	0	1	other
CL2001031636AA (testset)	other	0.02625	0.97375	other
CL2001032002AA	other	1e-05	0.99999	other
CL2001032005AA	other	1e-05	0.99999	other
CL2001032008AA	other	0.00112	0.99888	other
CL2001032009AA	other	0.00011	0.99989	other
CL2001032010AA	other	0	1	other
CL2001032011AA	other	0.00065	0.99935	other
CL2001032012AA	other	2e-05	0.99998	other
CL2001032013AA	other	2e-05	0.99998	other
CL2001032015AA (testset)	other	0.00041	0.99959	other
CL2001032016AA (testset)	other	1e-05	0.99999	other
CL2001032019AA	other	6e-05	0.99994	other
CL2001032020AA (testset)	other	1e-05	0.99999	other
CL2001032025AA (testset)	other	2e-05	0.99998	other
CL2001032026AA	other	1e-05	0.99999	other
CL2001032027AA (testset)	other	8e-04	0.9992	other
CL2001032030AA (testset)	other	6e-05	0.99994	other
CL2001032031AA (testset)	other	0.00012	0.99988	other
CL2001032032AA	other	0.00138	0.99862	other
CL2001032034AA (testset)	other	0.00018	0.99982	other
CL2001032036AA	other	0.00029	0.99971	other
CL2001032041AA (testset)	other	5e-05	0.99995	other
CL2001032043AA	other	5e-05	0.99995	other
CL2001032044AA	other	1e-05	0.99999	other
CL2001032045AA (testset)	other	5e-05	0.99995	other
CL2001032046AA	other	1e-05	0.99999	other
CL2001032101AA	other	1e-05	0.99999	other
CL2001032102AA	other	1e-05	0.99999	other
CL2001032103AA	other	0	1	other
CL2001032104AA	other	1e-05	0.99999	other
CL2001032105AA	other	3e-05	0.99997	other
CL2001032107AA	other	1e-05	0.99999	other
CL2001032108AA (testset)	other	1e-05	0.99999	other
CL2001032109AA (testset)	other	0	1	other
CL2001032110AA	other	3e-05	0.99997	other
CL2001032111AA (testset)	other	3e-05	0.99997	other
CL2001032113AA	other	0	1	other
CL2001032114AA	other	3e-05	0.99997	other
CL2001032115AA	other	2e-05	0.99998	other
CL2001032116AA	other	0	1	other
CL2001032117AA (testset)	other	0.00011	0.99989	other
CL2001032121AA	other	4e-05	0.99996	other
CL2001032122AA	SQUAMOUS	0.99995	5e-05	SQUAMOUS
CL2001032124AA (testset)	other	1e-05	0.99999	other
CL2001032125AA	other	8e-04	0.9992	other
CL2001032127AA (testset)	other	2e-05	0.99998	other
CL2001032128AA (testset)	other	9e-05	0.99991	other
CL2001032129AA (testset)	SQUAMOUS	1	0	SQUAMOUS
CL2001032130AA	other	8e-05	0.99992	other
CL2001032132AA (testset)	other	0	1	other
CL2001032134AA	other	0.00214	0.99786	other
CL2001032135AA	other	0.00064	0.99936	other
CL2001032136AA (testset)	other	0.00037	0.99963	other
CL2001032138AA	other	7e-05	0.99993	other
CL2001032141AA	other	0.00015	0.99985	other
CL2001032142AA	other	0.54965	0.45035	SQUAMOUS
CL2001032144AA	SQUAMOUS	1	0	SQUAMOUS
CL2001032145AA (testset)	other	1e-05	0.99999	other
CL2001032147AA (testset)	other	4e-05	0.99996	other
CL2001032149AA (testset)	other	0.00163	0.99837	other
CL2001032151AA (testset)	other	2e-05	0.99998	other
CL2001032152AA	other	1e-05	0.99999	other
CL2001032153AA (testset)	SQUAMOUS	0.99971	0.00029	SQUAMOUS
CL2001032155AA	other	0.03961	0.96039	other
CL2001032156AA	other	0.00239	0.99761	other
CL2001032202AA	other	3e-05	0.99997	other
CL2001032206AA (testset)	other	7e-05	0.99993	other
CL2001032207AA	SQUAMOUS	1	0	SQUAMOUS
CL2001032209AA (testset)	SQUAMOUS	1	0	SQUAMOUS
CL2001032210AA	other	1e-05	0.99999	other
CL2001032211AA (testset)	other	0.00027	0.99973	other
CL2001032212AA (testset)	other	1e-05	0.99999	other
CL2001032213AA	other	0.00012	0.99988	other
CL2001032214AA	other	0.00413	0.99587	other
CL2001032217AA (testset)	other	1e-05	0.99999	other
CL2001032218AA	SQUAMOUS	0.99983	0.00017	SQUAMOUS
CL2001032219AA	other	0	1	other
CL2001032220AA	other	2e-05	0.99998	other
CL2001032222AA	SQUAMOUS	0.99952	0.00048	SQUAMOUS
CL2001032229AA	other	1e-05	0.99999	other
CL2001032231AA	SQUAMOUS	0.99184	0.00816	SQUAMOUS
CL2001032232AA (testset)	other	4e-05	0.99996	other
CL2001032233AA	other	2e-05	0.99998	other
CL2001032238AA (testset)	other	0	1	other
CL2001032239AA	SQUAMOUS	0.3423	0.6577	other
CL2001032240AA	SQUAMOUS	0.99999	1e-05	SQUAMOUS
CL2001032241AA	other	2e-05	0.99998	other
CL2001032242AA	other	0.00128	0.99872	other
CL2001032243AA (testset)	other	3e-05	0.99997	other
CL2001032248AA	other	0.00012	0.99988	other
CL2001032249AA	other	2e-05	0.99998	other
CL2001032252AA	other	0.42325	0.57675	other
CL2001032254AA (testset)	other	3e-05	0.99997	other
CL2001032255AA (testset)	other	6e-05	0.99994	other
CL2001032256AA	other	9e-05	0.99991	other
CL2001032259AA (testset)	other	0.0021	0.9979	other
CL2001032260AA (testset)	other	3e-05	0.99997	other
CL2001032301AA	other	0.00055	0.99945	other
CL2001032304AA	other	7e-05	0.99993	other
CL2001032305AA (testset)	SQUAMOUS	0.9957	0.0043	SQUAMOUS
CL2001032306AA	other	1e-04	0.9999	other
CL2001032307AA	other	0.00052	0.99948	other
CL2001032308AA	other	0.29592	0.70408	other
CL2001032309AA	other	0	1	other
CL2001032310AA	other	0.00014	0.99986	other
CL2001032311AA	other	0.02824	0.97176	other
CL2001032312AA	other	3e-05	0.99997	other
CL2001032313AA	other	1e-05	0.99999	other
CL2001032314AA	other	0	1	other
CL2001032316AA	other	3e-04	0.9997	other
CL2001032601AA	other	3e-05	0.99997	other
CL2001032602AA (testset)	other	1e-05	0.99999	other
CL2001032604AA (testset)	other	0.00054	0.99946	other
CL2001032607AA (testset)	other	0	1	other
CL2001032608AA	SQUAMOUS	1	0	SQUAMOUS
CL2001032610AA	other	1e-04	0.9999	other
CL2001032612AA	other	1e-05	0.99999	other
CL2001032613AA	other	2e-05	0.99998	other
CL2001032614AA (testset)	other	1e-05	0.99999	other
CL2001032616AA	other	1e-05	0.99999	other
CL2001032617AA	other	3e-04	0.9997	other
CL2001032620AA	other	1e-05	0.99999	other
CL2001032625AA	other	1e-05	0.99999	other
CL2001032627AA	SQUAMOUS	1	0	SQUAMOUS
CL2001032628AA	other	0	1	other
CL2001032629AA (testset)	other	0	1	other
CL2001032630AA (testset)	other	1e-05	0.99999	other
CL2001032632AA	other	1e-05	0.99999	other
CL2001032638AA	other	0.00065	0.99935	other
CL2001032640AA	other	5e-05	0.99995	other
CL2001032643AA	other	0.00039	0.99961	other
CL2001032644AA (testset)	SQUAMOUS	1	0	SQUAMOUS
CL2001032647AA	other	4e-05	0.99996	other
CL2001032701AA	other	2e-05	0.99998	other
CL2001032702AA	other	0.00033	0.99967	other
CL2001032703AA	other	0.00196	0.99804	other
CL2001032704AA	other	0.02702	0.97298	other
CL2001032706AA	other	0.00017	0.99983	other
CL2001032709AA (testset)	other	3e-05	0.99997	other
CL2001032716AA	other	0.00113	0.99887	other
CL2001032717AA (testset)	other	1e-05	0.99999	other
CL2001032718AA	other	0.00013	0.99987	other
CL2001032719AA (testset)	SQUAMOUS	0.99539	0.00461	SQUAMOUS
CL2001032720AA	other	2e-05	0.99998	other
CL2001032722AA	other	1e-05	0.99999	other
CL2001032724AA	other	1e-05	0.99999	other
CL2001032725AA (testset)	other	4e-05	0.99996	other
CL2001032727AA	other	1e-05	0.99999	other
CL2001032729AA	other	1e-04	0.9999	other
CL2001032730AA	other	1e-05	0.99999	other
CL2001032732AA	SQUAMOUS	0.00013	0.99987	other
CL2001032733AA (testset)	other	1e-05	0.99999	other
CL2001032738AA	other	0.00026	0.99974	other
CL2001032742AA (testset)	other	0.0106	0.9894	other
CL2001032746AA (testset)	other	0.00016	0.99984	other
CL2001032747AA (testset)	other	0.00013	0.99987	other
CL2001032833AA (testset)	other	8e-05	0.99992	other
CL2001032836AA	other	0.00026	0.99974	other
CL2001032838AA	other	9e-05	0.99991	other
CL2001032839AA	other	6e-05	0.99994	other
CL2001032841AA	other	1e-05	0.99999	other
CL2001032842AA	other	2e-05	0.99998	other
CL2001032843AA	other	1e-05	0.99999	other
CL2001032845AA (testset)	other	0	1	other
CL2001032846AA (testset)	other	8e-05	0.99992	other
CL2001032847AA (testset)	other	1e-05	0.99999	other
CL2001032848AA	other	0.00026	0.99974	other
CL2001032850AA	other	0	1	other
CL2001032853AA	SQUAMOUS	1	0	SQUAMOUS
CL2001032854AA	other	0	1	other
CL2001032856AA	other	3e-05	0.99997	other
CL2001032857AA	other	0	1	other
CL2001032860AA	other	1e-05	0.99999	other
CL2001040305AA	other	0.01998	0.98002	other
CL2001040306AA	other	1e-05	0.99999	other
CL2001041708AA (testset)	other	0.00037	0.99963	other
CL2001041711AA	other	0	1	other
CL2001041716AA	other	4e-05	0.99996	other
CL2001042501AA	other	0	1	other
CL2001042505AA (testset)	other	6e-05	0.99994	other
CL2001042506AA	other	0.00036	0.99964	other