GO:0006814

GO:0006814

sodium ion transport (annotated genes)

Biological Process

Parent nodes

GO:0015672	monovalent inorganic cation transport
GO:0030001	metal ion transport

This leaf node contains 53 genes

The following 42 of these are used in classification:

	Symbol	Genename	SQUAMOUS score	other score
32563_at	ATP1B3	ATPase, Na+/K+ transporting, beta 3 polypeptide	1.625	-0.188
39682_at	SCNN1B	sodium channel, nonvoltage-gated 1, beta (Liddle syndrome)	-0.5011	0.058
34377_at	ATP1A2	ATPase, Na+/K+ transporting, alpha 2 (+) polypeptide	-0.4876	0.0564
38516_at	SCN1B	sodium channel, voltage-gated, type I, beta	-0.4826	0.0558
38303_at	TMEM1	transmembrane protein 1	-0.4657	0.0539
40954_at	FXYD2	FXYD domain containing ion transport regulator 2	-0.4148	0.048
973_at	SGK	serum/glucocorticoid regulated kinase	0.3955	-0.0458
40317_at	ACCN1	amiloride-sensitive cation channel 1, neuronal (degenerin)	0.3246	-0.0376
35207_at	SCNN1A	sodium channel, nonvoltage-gated 1 alpha	-0.3158	0.0365
41368_at	SLC13A3	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	-0.3075	0.0356
32681_at	SLC9A1	solute carrier family 9 (sodium/hydrogen exchanger), isoform 1 (antiporter, Na+/H+, amiloride sensitive)	0.2972	-0.0344
34118_at	ATP1B2	ATPase, Na+/K+ transporting, beta 2 polypeptide	-0.2716	0.0314
36331_at	TMEM1	transmembrane protein 1	-0.2713	0.0314
31559_at	SLC13A2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2	-0.2622	0.0303
35256_at	SLC5A6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	0.2588	-0.0299
40360_at	SLC10A3	solute carrier family 10 (sodium/bile acid cotransporter family), member 3	0.2508	-0.029
33545_at	SCN4A	sodium channel, voltage-gated, type IV, alpha	-0.2458	0.0284
35904_at	SLC10A2	solute carrier family 10 (sodium/bile acid cotransporter family), member 2	-0.227	0.0263
41079_at	ACCN3	amiloride-sensitive cation channel 3	-0.2214	0.0256
33497_at	SCNN1G	sodium channel, nonvoltage-gated 1, gamma	-0.2157	0.025
36205_at	NDUFA9	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa	0.2028	-0.0235
34462_at	SCNN1D	sodium channel, nonvoltage-gated 1, delta	-0.1935	0.0224
34035_at	SLC10A1	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	0.1468	-0.017
32225_at	ATP1A1	ATPase, Na+/K+ transporting, alpha 1 polypeptide	-0.1441	0.0167
34520_at	HCN2	hyperpolarization activated cyclic nucleotide-gated potassium channel 2	-0.1315	0.0152
32920_at	HCN4	hyperpolarization activated cyclic nucleotide-gated potassium channel 4	-0.13	0.015
37953_s_at	ACCN2	amiloride-sensitive cation channel 2, neuronal	0.1295	-0.015
39498_at	FXYD2	FXYD domain containing ion transport regulator 2	-0.1221	0.0141
33010_at	SLC5A4	solute carrier family 5 (low affinity glucose cotransporter), member 4	-0.1111	0.0129
35670_at	ATP1A3	ATPase, Na+/K+ transporting, alpha 3 polypeptide	-0.0975	0.0113
36542_at	SLC9A6	solute carrier family 9 (sodium/hydrogen exchanger), isoform 6	0.0968	-0.0112
31328_at	SLC34A1	solute carrier family 34 (sodium phosphate), member 1	-0.0961	0.0111
34516_at	SLC12A1	solute carrier family 12 (sodium/potassium/chloride transporters), member 1	-0.0876	0.0101
35510_at	SCN8A	sodium channel, voltage gated, type VIII, alpha	-0.0652	0.0075
32459_at	SLC5A5	solute carrier family 5 (sodium iodide symporter), member 5	0.0285	-0.0033
32373_at	SLC17A2	solute carrier family 17 (sodium phosphate), member 2	0.0271	-0.0031
41305_at	SLC5A2	solute carrier family 5 (sodium/glucose cotransporter), member 2	-0.0264	0.0031
34208_at	SLC12A5	solute carrier family 12, (potassium-chloride transporter) member 5	0.0194	-0.0022
32981_at	SLC9A3	solute carrier family 9 (sodium/hydrogen exchanger), isoform 3	-0.0174	0.002
32439_at	ATP4B	ATPase, H+/K+ exchanging, beta polypeptide	-0.0161	0.0019
40247_at	SLC9A7	solute carrier family 9 (sodium/hydrogen exchanger), isoform 7	-0.0048	6e-04
38122_at	SLC23A2	solute carrier family 23 (nucleobase transporters), member 2	5e-04	-1e-04

Performance on training data

• Error rate: 0.02222
• Performance: 0.18415
• Redundancy: 3.80471

	Sensitivity	Specificity
SQUAMOUS	0.85714	0.99174
other	0.99174	0.85714

Performance on test data

• Error rate: 0.07353
• Performance: 0.30419
• Redundancy: 4.24588

	Sensitivity	Specificity
SQUAMOUS	0.57143	0.96721
other	0.96721	0.57143

Predictions

	Class	SQUAMOUS	other	Predictionn
CL2001031606AA (testset)	SQUAMOUS	0.47827	0.52173	other
CL2001031607AA	other	0.04794	0.95206	other
CL2001031608AA	other	0.00635	0.99365	other
CL2001031609AA (testset)	other	0	1	other
CL2001031611AA	other	0.07713	0.92287	other
CL2001031612AA (testset)	other	0.68437	0.31563	SQUAMOUS
CL2001031613AA (testset)	other	0.44059	0.55941	other
CL2001031615AA (testset)	other	0.0135	0.9865	other
CL2001031616AA	other	0.18086	0.81914	other
CL2001031618AA	other	1e-04	0.9999	other
CL2001031620AA	SQUAMOUS	0.74092	0.25908	SQUAMOUS
CL2001031621AA	SQUAMOUS	0.95048	0.04952	SQUAMOUS
CL2001031622AA	other	0.15375	0.84625	other
CL2001031625AA	other	0.00059	0.99941	other
CL2001031627AA (testset)	other	0.00407	0.99593	other
CL2001031628AA	other	0.00622	0.99378	other
CL2001031629AA	other	0.07552	0.92448	other
CL2001031630AA	other	2e-05	0.99998	other
CL2001031631AA (testset)	other	0.08826	0.91174	other
CL2001031632AA	other	0.00227	0.99773	other
CL2001031634AA	other	4e-04	0.9996	other
CL2001031635AA (testset)	other	0.00224	0.99776	other
CL2001031636AA (testset)	other	0.35259	0.64741	other
CL2001032002AA	other	1e-05	0.99999	other
CL2001032005AA	other	0.00084	0.99916	other
CL2001032008AA	other	0.0159	0.9841	other
CL2001032009AA	other	0.00042	0.99958	other
CL2001032010AA	other	0.02374	0.97626	other
CL2001032011AA	other	0.0267	0.9733	other
CL2001032012AA	other	0.00391	0.99609	other
CL2001032013AA	other	0.00353	0.99647	other
CL2001032015AA (testset)	other	0.00292	0.99708	other
CL2001032016AA (testset)	other	3e-04	0.9997	other
CL2001032019AA	other	0.00173	0.99827	other
CL2001032020AA (testset)	other	0.02431	0.97569	other
CL2001032025AA (testset)	other	0.00014	0.99986	other
CL2001032026AA	other	0.00045	0.99955	other
CL2001032027AA (testset)	other	0.15183	0.84817	other
CL2001032030AA (testset)	other	0.01193	0.98807	other
CL2001032031AA (testset)	other	0.00247	0.99753	other
CL2001032032AA	other	0.00017	0.99983	other
CL2001032034AA (testset)	other	0.17678	0.82322	other
CL2001032036AA	other	0.01944	0.98056	other
CL2001032041AA (testset)	other	0.74142	0.25858	SQUAMOUS
CL2001032043AA	other	0.01863	0.98137	other
CL2001032044AA	other	0.00011	0.99989	other
CL2001032045AA (testset)	other	0.01173	0.98827	other
CL2001032046AA	other	0.00667	0.99333	other
CL2001032101AA	other	0.00068	0.99932	other
CL2001032102AA	other	0.07757	0.92243	other
CL2001032103AA	other	7e-04	0.9993	other
CL2001032104AA	other	0.00015	0.99985	other
CL2001032105AA	other	0.00637	0.99363	other
CL2001032107AA	other	0.00357	0.99643	other
CL2001032108AA (testset)	other	0.00051	0.99949	other
CL2001032109AA (testset)	other	0.00139	0.99861	other
CL2001032110AA	other	0.04895	0.95105	other
CL2001032111AA (testset)	other	0.00102	0.99898	other
CL2001032113AA	other	5e-05	0.99995	other
CL2001032114AA	other	0.00193	0.99807	other
CL2001032115AA	other	0	1	other
CL2001032116AA	other	1e-05	0.99999	other
CL2001032117AA (testset)	other	0.0018	0.9982	other
CL2001032121AA	other	0.00178	0.99822	other
CL2001032122AA	SQUAMOUS	0.99382	0.00618	SQUAMOUS
CL2001032124AA (testset)	other	5e-05	0.99995	other
CL2001032125AA	other	0.02479	0.97521	other
CL2001032127AA (testset)	other	2e-04	0.9998	other
CL2001032128AA (testset)	other	0.49875	0.50125	other
CL2001032129AA (testset)	SQUAMOUS	0.99948	0.00052	SQUAMOUS
CL2001032130AA	other	0.01438	0.98562	other
CL2001032132AA (testset)	other	0.00017	0.99983	other
CL2001032134AA	other	0.24106	0.75894	other
CL2001032135AA	other	0.04605	0.95395	other
CL2001032136AA (testset)	other	0.33563	0.66437	other
CL2001032138AA	other	0.01804	0.98196	other
CL2001032141AA	other	0.00089	0.99911	other
CL2001032142AA	other	0.14802	0.85198	other
CL2001032144AA	SQUAMOUS	0.96973	0.03027	SQUAMOUS
CL2001032145AA (testset)	other	0.00106	0.99894	other
CL2001032147AA (testset)	other	0.18029	0.81971	other
CL2001032149AA (testset)	other	0.20131	0.79869	other
CL2001032151AA (testset)	other	1e-05	0.99999	other
CL2001032152AA	other	8e-05	0.99992	other
CL2001032153AA (testset)	SQUAMOUS	0.28306	0.71694	other
CL2001032155AA	other	0.69835	0.30165	SQUAMOUS
CL2001032156AA	other	0.01497	0.98503	other
CL2001032202AA	other	0.04964	0.95036	other
CL2001032206AA (testset)	other	0.36789	0.63211	other
CL2001032207AA	SQUAMOUS	0.94742	0.05258	SQUAMOUS
CL2001032209AA (testset)	SQUAMOUS	0.99842	0.00158	SQUAMOUS
CL2001032210AA	other	6e-05	0.99994	other
CL2001032211AA (testset)	other	0.01589	0.98411	other
CL2001032212AA (testset)	other	0.00047	0.99953	other
CL2001032213AA	other	0.11362	0.88638	other
CL2001032214AA	other	0.39548	0.60452	other
CL2001032217AA (testset)	other	0.00102	0.99898	other
CL2001032218AA	SQUAMOUS	0.76399	0.23601	SQUAMOUS
CL2001032219AA	other	3e-05	0.99997	other
CL2001032220AA	other	0.00099	0.99901	other
CL2001032222AA	SQUAMOUS	0.68022	0.31978	SQUAMOUS
CL2001032229AA	other	0.00029	0.99971	other
CL2001032231AA	SQUAMOUS	0.40807	0.59193	other
CL2001032232AA (testset)	other	0.00065	0.99935	other
CL2001032233AA	other	0.00245	0.99755	other
CL2001032238AA (testset)	other	0.00016	0.99984	other
CL2001032239AA	SQUAMOUS	0.6728	0.3272	SQUAMOUS
CL2001032240AA	SQUAMOUS	0.89985	0.10015	SQUAMOUS
CL2001032241AA	other	0.02362	0.97638	other
CL2001032242AA	other	0.0276	0.9724	other
CL2001032243AA (testset)	other	0.00028	0.99972	other
CL2001032248AA	other	0.00488	0.99512	other
CL2001032249AA	other	0.00053	0.99947	other
CL2001032252AA	other	0.28018	0.71982	other
CL2001032254AA (testset)	other	0.00288	0.99712	other
CL2001032255AA (testset)	other	0.00102	0.99898	other
CL2001032256AA	other	0.08219	0.91781	other
CL2001032259AA (testset)	other	0.00025	0.99975	other
CL2001032260AA (testset)	other	0.01232	0.98768	other
CL2001032301AA	other	0.02737	0.97263	other
CL2001032304AA	other	0.20879	0.79121	other
CL2001032305AA (testset)	SQUAMOUS	0.13915	0.86085	other
CL2001032306AA	other	0.0242	0.9758	other
CL2001032307AA	other	0.04921	0.95079	other
CL2001032308AA	other	0.01104	0.98896	other
CL2001032309AA	other	0.00258	0.99742	other
CL2001032310AA	other	0.00188	0.99812	other
CL2001032311AA	other	0.02414	0.97586	other
CL2001032312AA	other	0.00362	0.99638	other
CL2001032313AA	other	6e-05	0.99994	other
CL2001032314AA	other	0.00284	0.99716	other
CL2001032316AA	other	0.00206	0.99794	other
CL2001032601AA	other	0.01988	0.98012	other
CL2001032602AA (testset)	other	5e-05	0.99995	other
CL2001032604AA (testset)	other	0.00093	0.99907	other
CL2001032607AA (testset)	other	1e-05	0.99999	other
CL2001032608AA	SQUAMOUS	0.97695	0.02305	SQUAMOUS
CL2001032610AA	other	0.06929	0.93071	other
CL2001032612AA	other	0.07272	0.92728	other
CL2001032613AA	other	0.00474	0.99526	other
CL2001032614AA (testset)	other	0.00021	0.99979	other
CL2001032616AA	other	0.00106	0.99894	other
CL2001032617AA	other	0.00398	0.99602	other
CL2001032620AA	other	0.00379	0.99621	other
CL2001032625AA	other	0.00019	0.99981	other
CL2001032627AA	SQUAMOUS	0.81216	0.18784	SQUAMOUS
CL2001032628AA	other	0.00559	0.99441	other
CL2001032629AA (testset)	other	1e-05	0.99999	other
CL2001032630AA (testset)	other	0.00032	0.99968	other
CL2001032632AA	other	0.00828	0.99172	other
CL2001032638AA	other	0.18127	0.81873	other
CL2001032640AA	other	5e-05	0.99995	other
CL2001032643AA	other	0.04667	0.95333	other
CL2001032644AA (testset)	SQUAMOUS	0.94675	0.05325	SQUAMOUS
CL2001032647AA	other	0.02765	0.97235	other
CL2001032701AA	other	0.00036	0.99964	other
CL2001032702AA	other	0.03397	0.96603	other
CL2001032703AA	other	0.27688	0.72312	other
CL2001032704AA	other	0.07323	0.92677	other
CL2001032706AA	other	0.0695	0.9305	other
CL2001032709AA (testset)	other	0.00328	0.99672	other
CL2001032716AA	other	0.04841	0.95159	other
CL2001032717AA (testset)	other	0.01012	0.98988	other
CL2001032718AA	other	0.02285	0.97715	other
CL2001032719AA (testset)	SQUAMOUS	0.92429	0.07571	SQUAMOUS
CL2001032720AA	other	0.00048	0.99952	other
CL2001032722AA	other	2e-04	0.9998	other
CL2001032724AA	other	0.01059	0.98941	other
CL2001032725AA (testset)	other	0.00137	0.99863	other
CL2001032727AA	other	0.06033	0.93967	other
CL2001032729AA	other	0.05228	0.94772	other
CL2001032730AA	other	0.00216	0.99784	other
CL2001032732AA	SQUAMOUS	0.06752	0.93248	other
CL2001032733AA (testset)	other	0.00114	0.99886	other
CL2001032738AA	other	0.11578	0.88422	other
CL2001032742AA (testset)	other	0.07412	0.92588	other
CL2001032746AA (testset)	other	0.01219	0.98781	other
CL2001032747AA (testset)	other	0.00452	0.99548	other
CL2001032833AA (testset)	other	0.00628	0.99372	other
CL2001032836AA	other	0.4615	0.5385	other
CL2001032838AA	other	0.0081	0.9919	other
CL2001032839AA	other	0.0135	0.9865	other
CL2001032841AA	other	4e-04	0.9996	other
CL2001032842AA	other	0.0033	0.9967	other
CL2001032843AA	other	0.00012	0.99988	other
CL2001032845AA (testset)	other	0.00054	0.99946	other
CL2001032846AA (testset)	other	1e-04	0.9999	other
CL2001032847AA (testset)	other	1e-05	0.99999	other
CL2001032848AA	other	0.17211	0.82789	other
CL2001032850AA	other	3e-05	0.99997	other
CL2001032853AA	SQUAMOUS	0.62126	0.37874	SQUAMOUS
CL2001032854AA	other	6e-05	0.99994	other
CL2001032856AA	other	0.00352	0.99648	other
CL2001032857AA	other	2e-04	0.9998	other
CL2001032860AA	other	4e-05	0.99996	other
CL2001040305AA	other	0.02734	0.97266	other
CL2001040306AA	other	0.00012	0.99988	other
CL2001041708AA (testset)	other	0.00187	0.99813	other
CL2001041711AA	other	0.00016	0.99984	other
CL2001041716AA	other	0.04475	0.95525	other
CL2001042501AA	other	0	1	other
CL2001042505AA (testset)	other	0.01922	0.98078	other
CL2001042506AA	other	0.15389	0.84611	other