GO:0006810

GO:0006810

transport (annotated genes)

Biological Process

Parent node

GO:0006810	transport

This leaf node contains 329 genes

The following 23 of these are used in classification:

	Symbol	Genename	SQUAMOUS score	other score
32563_at	ATP1B3	ATPase, Na+/K+ transporting, beta 3 polypeptide	0.8195	-0.0948
34016_s_at	ABCC1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	0.5	-0.0579
40356_at	CLCA2	chloride channel, calcium activated, family member 2	0.425	-0.0492
38075_at	SYPL	synaptophysin-like protein	0.3456	-0.04
1137_at	SLC20A2	solute carrier family 20 (phosphate transporter), member 2	0.2788	-0.0323
38830_at	ABCF3	ATP-binding cassette, sub-family F (GCN20), member 3	0.2579	-0.0298
41126_at	SLC1A4	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	0.2501	-0.0289
38998_g_at	SLC25A1	solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1	0.2482	-0.0287
39799_at	FABP5	fatty acid binding protein 5 (psoriasis-associated)	0.2299	-0.0266
41778_at	SLC1A5	solute carrier family 1 (neutral amino acid transporter), member 5	0.2278	-0.0264
39748_at	SLC7A1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	0.2087	-0.0241
32186_at	SLC7A5	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	0.1704	-0.0197
32790_at	NCBP2	nuclear cap binding protein subunit 2, 20kDa	0.1589	-0.0184
36956_at	SLC20A2	solute carrier family 20 (phosphate transporter), member 2	0.1387	-0.016
34384_at	ABCC1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	0.1099	-0.0127
41271_at	SLC7A8	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	0.0987	-0.0114
34017_s_at	ABCC1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	0.0825	-0.0095
38828_s_at	KHSRP	KH-type splicing regulatory protein (FUSE binding protein 2)	0.0793	-0.0092
38997_at	SLC25A1	solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1	0.0642	-0.0074
38728_at	NUP205	nucleoporin 205kDa	0.0521	-0.006
36206_at	SLC16A1	solute carrier family 16 (monocarboxylic acid transporters), member 1	0.0374	-0.0043
1896_s_at	ABCC1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	0.0314	-0.0036
41133_at	G3BP	Ras-GTPase-activating protein SH3-domain-binding protein	0.012	-0.0014

Performance on training data

• Error rate: 0.02222
• Performance: 0.22433
• Redundancy: 3.15739

	Sensitivity	Specificity
SQUAMOUS	0.92857	0.98347
other	0.98347	0.92857

Performance on test data

• Error rate: 0.02941
• Performance: 0.2191
• Redundancy: 3.41112

	Sensitivity	Specificity
SQUAMOUS	1	0.96721
other	0.96721	1

Predictions

	Class	SQUAMOUS	other	Predictionn
CL2001031606AA (testset)	SQUAMOUS	0.50105	0.49895	SQUAMOUS
CL2001031607AA	other	0.07072	0.92928	other
CL2001031608AA	other	0.01402	0.98598	other
CL2001031609AA (testset)	other	0.00207	0.99793	other
CL2001031611AA	other	0.126	0.874	other
CL2001031612AA (testset)	other	0.68057	0.31943	SQUAMOUS
CL2001031613AA (testset)	other	0.34572	0.65428	other
CL2001031615AA (testset)	other	0.01718	0.98282	other
CL2001031616AA	other	0.36232	0.63768	other
CL2001031618AA	other	0.0022	0.9978	other
CL2001031620AA	SQUAMOUS	0.96145	0.03855	SQUAMOUS
CL2001031621AA	SQUAMOUS	0.99808	0.00192	SQUAMOUS
CL2001031622AA	other	0.09786	0.90214	other
CL2001031625AA	other	0.01447	0.98553	other
CL2001031627AA (testset)	other	0.00841	0.99159	other
CL2001031628AA	other	0.02487	0.97513	other
CL2001031629AA	other	0.33392	0.66608	other
CL2001031630AA	other	0.00262	0.99738	other
CL2001031631AA (testset)	other	0.08806	0.91194	other
CL2001031632AA	other	0.0291	0.9709	other
CL2001031634AA	other	0.03851	0.96149	other
CL2001031635AA (testset)	other	0.01477	0.98523	other
CL2001031636AA (testset)	other	0.84341	0.15659	SQUAMOUS
CL2001032002AA	other	0.00259	0.99741	other
CL2001032005AA	other	0.00446	0.99554	other
CL2001032008AA	other	0.0982	0.9018	other
CL2001032009AA	other	0.03585	0.96415	other
CL2001032010AA	other	0.02425	0.97575	other
CL2001032011AA	other	0.15292	0.84708	other
CL2001032012AA	other	0.02768	0.97232	other
CL2001032013AA	other	0.01657	0.98343	other
CL2001032015AA (testset)	other	0.02766	0.97234	other
CL2001032016AA (testset)	other	0.01772	0.98228	other
CL2001032019AA	other	0.0176	0.9824	other
CL2001032020AA (testset)	other	0.03418	0.96582	other
CL2001032025AA (testset)	other	0.00447	0.99553	other
CL2001032026AA	other	0.00988	0.99012	other
CL2001032027AA (testset)	other	0.08642	0.91358	other
CL2001032030AA (testset)	other	0.03849	0.96151	other
CL2001032031AA (testset)	other	0.01712	0.98288	other
CL2001032032AA	other	0.00418	0.99582	other
CL2001032034AA (testset)	other	0.18871	0.81129	other
CL2001032036AA	other	0.15063	0.84937	other
CL2001032041AA (testset)	other	0.15869	0.84131	other
CL2001032043AA	other	0.0541	0.9459	other
CL2001032044AA	other	0.00393	0.99607	other
CL2001032045AA (testset)	other	0.01901	0.98099	other
CL2001032046AA	other	0.02188	0.97812	other
CL2001032101AA	other	0.01195	0.98805	other
CL2001032102AA	other	0.10682	0.89318	other
CL2001032103AA	other	0.00393	0.99607	other
CL2001032104AA	other	0.01081	0.98919	other
CL2001032105AA	other	0.02777	0.97223	other
CL2001032107AA	other	0.01143	0.98857	other
CL2001032108AA (testset)	other	0.00172	0.99828	other
CL2001032109AA (testset)	other	0.00455	0.99545	other
CL2001032110AA	other	0.02498	0.97502	other
CL2001032111AA (testset)	other	0.01132	0.98868	other
CL2001032113AA	other	0.00095	0.99905	other
CL2001032114AA	other	0.00672	0.99328	other
CL2001032115AA	other	0.00057	0.99943	other
CL2001032116AA	other	0.01213	0.98787	other
CL2001032117AA (testset)	other	0.10917	0.89083	other
CL2001032121AA	other	0.01008	0.98992	other
CL2001032122AA	SQUAMOUS	0.9529	0.0471	SQUAMOUS
CL2001032124AA (testset)	other	0.00691	0.99309	other
CL2001032125AA	other	0.0262	0.9738	other
CL2001032127AA (testset)	other	0.00428	0.99572	other
CL2001032128AA (testset)	other	0.29443	0.70557	other
CL2001032129AA (testset)	SQUAMOUS	0.99944	0.00056	SQUAMOUS
CL2001032130AA	other	0.30394	0.69606	other
CL2001032132AA (testset)	other	0.01263	0.98737	other
CL2001032134AA	other	0.33094	0.66906	other
CL2001032135AA	other	0.18247	0.81753	other
CL2001032136AA (testset)	other	0.30683	0.69317	other
CL2001032138AA	other	0.03192	0.96808	other
CL2001032141AA	other	0.1362	0.8638	other
CL2001032142AA	other	0.11605	0.88395	other
CL2001032144AA	SQUAMOUS	0.98194	0.01806	SQUAMOUS
CL2001032145AA (testset)	other	0.00885	0.99115	other
CL2001032147AA (testset)	other	0.08773	0.91227	other
CL2001032149AA (testset)	other	0.20055	0.79945	other
CL2001032151AA (testset)	other	0.00305	0.99695	other
CL2001032152AA	other	0.00233	0.99767	other
CL2001032153AA (testset)	SQUAMOUS	0.85493	0.14507	SQUAMOUS
CL2001032155AA	other	0.52158	0.47842	SQUAMOUS
CL2001032156AA	other	0.06288	0.93712	other
CL2001032202AA	other	0.05587	0.94413	other
CL2001032206AA (testset)	other	0.14761	0.85239	other
CL2001032207AA	SQUAMOUS	0.99949	0.00051	SQUAMOUS
CL2001032209AA (testset)	SQUAMOUS	0.99988	0.00012	SQUAMOUS
CL2001032210AA	other	0.00522	0.99478	other
CL2001032211AA (testset)	other	0.09864	0.90136	other
CL2001032212AA (testset)	other	0.00571	0.99429	other
CL2001032213AA	other	0.0289	0.9711	other
CL2001032214AA	other	0.18144	0.81856	other
CL2001032217AA (testset)	other	0.00721	0.99279	other
CL2001032218AA	SQUAMOUS	0.92156	0.07844	SQUAMOUS
CL2001032219AA	other	0.00157	0.99843	other
CL2001032220AA	other	0.00515	0.99485	other
CL2001032222AA	SQUAMOUS	0.84711	0.15289	SQUAMOUS
CL2001032229AA	other	0.00702	0.99298	other
CL2001032231AA	SQUAMOUS	0.59623	0.40377	SQUAMOUS
CL2001032232AA (testset)	other	0.02192	0.97808	other
CL2001032233AA	other	0.03664	0.96336	other
CL2001032238AA (testset)	other	0.00116	0.99884	other
CL2001032239AA	SQUAMOUS	0.65099	0.34901	SQUAMOUS
CL2001032240AA	SQUAMOUS	0.99202	0.00798	SQUAMOUS
CL2001032241AA	other	0.02638	0.97362	other
CL2001032242AA	other	0.08458	0.91542	other
CL2001032243AA (testset)	other	0.00568	0.99432	other
CL2001032248AA	other	0.0518	0.9482	other
CL2001032249AA	other	0.00668	0.99332	other
CL2001032252AA	other	0.81871	0.18129	SQUAMOUS
CL2001032254AA (testset)	other	0.01903	0.98097	other
CL2001032255AA (testset)	other	0.04413	0.95587	other
CL2001032256AA	other	0.10525	0.89475	other
CL2001032259AA (testset)	other	0.00404	0.99596	other
CL2001032260AA (testset)	other	0.0093	0.9907	other
CL2001032301AA	other	0.0419	0.9581	other
CL2001032304AA	other	0.19068	0.80932	other
CL2001032305AA (testset)	SQUAMOUS	0.85911	0.14089	SQUAMOUS
CL2001032306AA	other	0.05897	0.94103	other
CL2001032307AA	other	0.05981	0.94019	other
CL2001032308AA	other	0.24576	0.75424	other
CL2001032309AA	other	0.00581	0.99419	other
CL2001032310AA	other	0.00181	0.99819	other
CL2001032311AA	other	0.31702	0.68298	other
CL2001032312AA	other	0.0083	0.9917	other
CL2001032313AA	other	0.00582	0.99418	other
CL2001032314AA	other	0.00993	0.99007	other
CL2001032316AA	other	0.01943	0.98057	other
CL2001032601AA	other	0.01703	0.98297	other
CL2001032602AA (testset)	other	0.00344	0.99656	other
CL2001032604AA (testset)	other	0.01232	0.98768	other
CL2001032607AA (testset)	other	0.00213	0.99787	other
CL2001032608AA	SQUAMOUS	0.93125	0.06875	SQUAMOUS
CL2001032610AA	other	0.04829	0.95171	other
CL2001032612AA	other	0.03209	0.96791	other
CL2001032613AA	other	0.00564	0.99436	other
CL2001032614AA (testset)	other	0.00664	0.99336	other
CL2001032616AA	other	0.00286	0.99714	other
CL2001032617AA	other	0.06959	0.93041	other
CL2001032620AA	other	0.01343	0.98657	other
CL2001032625AA	other	0.00148	0.99852	other
CL2001032627AA	SQUAMOUS	0.99915	0.00085	SQUAMOUS
CL2001032628AA	other	0.00856	0.99144	other
CL2001032629AA (testset)	other	0.00089	0.99911	other
CL2001032630AA (testset)	other	0.00459	0.99541	other
CL2001032632AA	other	0.00869	0.99131	other
CL2001032638AA	other	0.1362	0.8638	other
CL2001032640AA	other	0.01217	0.98783	other
CL2001032643AA	other	0.03949	0.96051	other
CL2001032644AA (testset)	SQUAMOUS	0.99192	0.00808	SQUAMOUS
CL2001032647AA	other	0.02274	0.97726	other
CL2001032701AA	other	0.00256	0.99744	other
CL2001032702AA	other	0.06299	0.93701	other
CL2001032703AA	other	0.12164	0.87836	other
CL2001032704AA	other	0.05879	0.94121	other
CL2001032706AA	other	0.04647	0.95353	other
CL2001032709AA (testset)	other	0.01561	0.98439	other
CL2001032716AA	other	0.13056	0.86944	other
CL2001032717AA (testset)	other	0.00776	0.99224	other
CL2001032718AA	other	0.04838	0.95162	other
CL2001032719AA (testset)	SQUAMOUS	0.9678	0.0322	SQUAMOUS
CL2001032720AA	other	0.00143	0.99857	other
CL2001032722AA	other	0.00602	0.99398	other
CL2001032724AA	other	0.02111	0.97889	other
CL2001032725AA (testset)	other	0.00652	0.99348	other
CL2001032727AA	other	0.02681	0.97319	other
CL2001032729AA	other	0.03979	0.96021	other
CL2001032730AA	other	0.00518	0.99482	other
CL2001032732AA	SQUAMOUS	0.02264	0.97736	other
CL2001032733AA (testset)	other	0.01016	0.98984	other
CL2001032738AA	other	0.04988	0.95012	other
CL2001032742AA (testset)	other	0.30261	0.69739	other
CL2001032746AA (testset)	other	0.01839	0.98161	other
CL2001032747AA (testset)	other	0.04352	0.95648	other
CL2001032833AA (testset)	other	0.04319	0.95681	other
CL2001032836AA	other	0.35724	0.64276	other
CL2001032838AA	other	0.03299	0.96701	other
CL2001032839AA	other	0.06504	0.93496	other
CL2001032841AA	other	0.00522	0.99478	other
CL2001032842AA	other	0.0235	0.9765	other
CL2001032843AA	other	0.00598	0.99402	other
CL2001032845AA (testset)	other	0.00901	0.99099	other
CL2001032846AA (testset)	other	0.01362	0.98638	other
CL2001032847AA (testset)	other	0.0092	0.9908	other
CL2001032848AA	other	0.15847	0.84153	other
CL2001032850AA	other	0.00342	0.99658	other
CL2001032853AA	SQUAMOUS	0.94296	0.05704	SQUAMOUS
CL2001032854AA	other	0.0011	0.9989	other
CL2001032856AA	other	0.00523	0.99477	other
CL2001032857AA	other	0.01982	0.98018	other
CL2001032860AA	other	0.00192	0.99808	other
CL2001040305AA	other	0.03567	0.96433	other
CL2001040306AA	other	0.00983	0.99017	other
CL2001041708AA (testset)	other	0.03893	0.96107	other
CL2001041711AA	other	0.00304	0.99696	other
CL2001041716AA	other	0.04509	0.95491	other
CL2001042501AA	other	5e-04	0.9995	other
CL2001042505AA (testset)	other	0.0248	0.9752	other
CL2001042506AA	other	0.21044	0.78956	other