GO:0006486

GO:0006486

protein amino acid glycosylation (annotated genes)

Biological Process

Parent node

GO:0006486	protein amino acid glycosylation

This leaf node contains 41 genes

The following 41 of these are used in classification:

	Symbol	Genename	SQUAMOUS score	other score
34693_at	SIAT7B	sialyltransferase 7 ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) B	1.3364	-0.1546
38161_at	ALG3	asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)	0.868	-0.1004
38469_at	TM4SF3	transmembrane 4 superfamily member 3	-0.672	0.0778
37035_at	SERP1	stress-associated endoplasmic reticulum protein 1	0.6349	-0.0735
34256_at	SIAT9	sialyltransferase 9 (CMP-NeuAc	-0.6081	0.0704
34879_at	DPM1	dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit	0.5723	-0.0662
40291_r_at	SIAT4A	sialyltransferase 4A (beta-galactoside alpha-2,3-sialyltransferase)	-0.5508	0.0637
36832_at	B3GNT3	UDP-GlcNAc	-0.5344	0.0618
35009_at	LRP2	low density lipoprotein-related protein 2	-0.5226	0.0605
34469_at	ABO	ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)	0.4777	-0.0553
36289_f_at	FUT6	fucosyltransferase 6 (alpha (1,3) fucosyltransferase)	-0.4244	0.0491
35861_at	SIAT4A	sialyltransferase 4A (beta-galactoside alpha-2,3-sialyltransferase)	0.4179	-0.0483
40678_at	SIAT8A	sialyltransferase 8A (alpha-N-acetylneuraminate	-0.3867	0.0447
41352_at	SIAT1	sialyltransferase 1 (beta-galactoside alpha-2,6-sialyltransferase)	-0.3436	0.0398
36322_at	FUT7	fucosyltransferase 7 (alpha (1,3) fucosyltransferase)	-0.3288	0.038
34779_at	SIAT7D	sialyltransferase 7D ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase)	-0.3058	0.0354
38495_s_at	FUT3	fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included)	-0.3022	0.035
38390_at	COG2	component of oligomeric golgi complex 2	0.2492	-0.0288
35100_at	SIAT8C	sialyltransferase 8C (alpha2,3Galbeta1,4GlcNAcalpha 2,8-sialyltransferase)	-0.2463	0.0285
314_at	PIGB	phosphatidylinositol glycan, class B	0.2341	-0.0271
40006_at	SIAT4B	sialyltransferase 4B (beta-galactoside alpha-2,3-sialyltransferase)	-0.2316	0.0268
33547_i_at	FUT2	fucosyltransferase 2 (secretor status included)	-0.2189	0.0253
41627_at	SDF2	stromal cell-derived factor 2	-0.2144	0.0248
39298_at	SIAT10	sialyltransferase 10 (alpha-2,3-sialyltransferase VI)	0.2122	-0.0246
38583_at	B3GALT2	UDP-Gal	-0.1717	0.0199
38413_at	DAD1	defender against cell death 1	0.1686	-0.0195
36916_at	SIAT4C	sialyltransferase 4C (beta-galactoside alpha-2,3-sialyltransferase)	-0.1648	0.0191
40337_at	FUT1	fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase)	-0.1557	0.018
32008_at	FUT9	fucosyltransferase 9 (alpha (1,3) fucosyltransferase)	-0.1518	0.0176
37991_at	ITM1	integral membrane protein 1	-0.1216	0.0141
33099_at	FUT5	fucosyltransferase 5 (alpha (1,3) fucosyltransferase)	-0.1203	0.0139
1359_at	IL17	interleukin 17 (cytotoxic T-lymphocyte-associated serine esterase 8)	-0.0951	0.011
33548_f_at	FUT2	fucosyltransferase 2 (secretor status included)	-0.078	0.009
33649_at	SIAT8D	sialyltransferase 8D (alpha-2, 8-polysialyltransferase)	-0.077	0.0089
36290_s_at	FUT6	fucosyltransferase 6 (alpha (1,3) fucosyltransferase)	0.0642	-0.0074
32942_at	SIAT8E	sialyltransferase 8E (alpha-2, 8-polysialyltransferase)	0.0525	-0.0061
36936_at	TSTA3	tissue specific transplantation antigen P35B	-0.0497	0.0058
40290_f_at	SIAT4A	sialyltransferase 4A (beta-galactoside alpha-2,3-sialyltransferase)	0.0432	-0.005
39293_at	B3GALT3	UDP-Gal	-0.0292	0.0034
39210_at	FUT4	fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)	-0.0272	0.0031
34128_at	B3GALT5	UDP-Gal	-0.0064	7e-04

Performance on training data

• Error rate: 0.02222
• Performance: 0.14209
• Redundancy: 4.18379

	Sensitivity	Specificity
SQUAMOUS	0.78571	1
other	1	0.78571

Performance on test data

• Error rate: 0.04412
• Performance: 0.14999
• Redundancy: 4.49768

	Sensitivity	Specificity
SQUAMOUS	0.71429	0.98361
other	0.98361	0.71429

Predictions

	Class	SQUAMOUS	other	Predictionn
CL2001031606AA (testset)	SQUAMOUS	0.2906	0.7094	other
CL2001031607AA	other	0.05653	0.94347	other
CL2001031608AA	other	0.00419	0.99581	other
CL2001031609AA (testset)	other	0.00466	0.99534	other
CL2001031611AA	other	0.00454	0.99546	other
CL2001031612AA (testset)	other	0.00362	0.99638	other
CL2001031613AA (testset)	other	0.24669	0.75331	other
CL2001031615AA (testset)	other	6e-04	0.9994	other
CL2001031616AA	other	0.01434	0.98566	other
CL2001031618AA	other	0.00045	0.99955	other
CL2001031620AA	SQUAMOUS	0.98398	0.01602	SQUAMOUS
CL2001031621AA	SQUAMOUS	0.6486	0.3514	SQUAMOUS
CL2001031622AA	other	0.11207	0.88793	other
CL2001031625AA	other	4e-05	0.99996	other
CL2001031627AA (testset)	other	0.00067	0.99933	other
CL2001031628AA	other	0.00026	0.99974	other
CL2001031629AA	other	0.0049	0.9951	other
CL2001031630AA	other	2e-05	0.99998	other
CL2001031631AA (testset)	other	5e-05	0.99995	other
CL2001031632AA	other	0.00169	0.99831	other
CL2001031634AA	other	1e-05	0.99999	other
CL2001031635AA (testset)	other	0.00011	0.99989	other
CL2001031636AA (testset)	other	0.03381	0.96619	other
CL2001032002AA	other	0.00022	0.99978	other
CL2001032005AA	other	0.00035	0.99965	other
CL2001032008AA	other	0.00115	0.99885	other
CL2001032009AA	other	0.00023	0.99977	other
CL2001032010AA	other	0.00071	0.99929	other
CL2001032011AA	other	0.00137	0.99863	other
CL2001032012AA	other	0.00021	0.99979	other
CL2001032013AA	other	0.00136	0.99864	other
CL2001032015AA (testset)	other	0.00533	0.99467	other
CL2001032016AA (testset)	other	0.00049	0.99951	other
CL2001032019AA	other	0.0019	0.9981	other
CL2001032020AA (testset)	other	0.00193	0.99807	other
CL2001032025AA (testset)	other	4e-05	0.99996	other
CL2001032026AA	other	0.00044	0.99956	other
CL2001032027AA (testset)	other	0.22837	0.77163	other
CL2001032030AA (testset)	other	0.00286	0.99714	other
CL2001032031AA (testset)	other	0.0179	0.9821	other
CL2001032032AA	other	0.00066	0.99934	other
CL2001032034AA (testset)	other	0.06371	0.93629	other
CL2001032036AA	other	0.00627	0.99373	other
CL2001032041AA (testset)	other	0.04502	0.95498	other
CL2001032043AA	other	0.0398	0.9602	other
CL2001032044AA	other	6e-05	0.99994	other
CL2001032045AA (testset)	other	0.0032	0.9968	other
CL2001032046AA	other	0.00508	0.99492	other
CL2001032101AA	other	4e-05	0.99996	other
CL2001032102AA	other	0.00437	0.99563	other
CL2001032103AA	other	2e-04	0.9998	other
CL2001032104AA	other	6e-05	0.99994	other
CL2001032105AA	other	0.00028	0.99972	other
CL2001032107AA	other	0.00108	0.99892	other
CL2001032108AA (testset)	other	0.00061	0.99939	other
CL2001032109AA (testset)	other	0.00221	0.99779	other
CL2001032110AA	other	0.003	0.997	other
CL2001032111AA (testset)	other	1e-04	0.9999	other
CL2001032113AA	other	5e-05	0.99995	other
CL2001032114AA	other	0.00054	0.99946	other
CL2001032115AA	other	5e-05	0.99995	other
CL2001032116AA	other	0.00025	0.99975	other
CL2001032117AA (testset)	other	0.00031	0.99969	other
CL2001032121AA	other	0.00394	0.99606	other
CL2001032122AA	SQUAMOUS	0.79235	0.20765	SQUAMOUS
CL2001032124AA (testset)	other	4e-05	0.99996	other
CL2001032125AA	other	0.0678	0.9322	other
CL2001032127AA (testset)	other	0.00267	0.99733	other
CL2001032128AA (testset)	other	0.0622	0.9378	other
CL2001032129AA (testset)	SQUAMOUS	0.99883	0.00117	SQUAMOUS
CL2001032130AA	other	0.01052	0.98948	other
CL2001032132AA (testset)	other	0.00032	0.99968	other
CL2001032134AA	other	0.20647	0.79353	other
CL2001032135AA	other	0.27158	0.72842	other
CL2001032136AA (testset)	other	0.00238	0.99762	other
CL2001032138AA	other	0.00277	0.99723	other
CL2001032141AA	other	0.00126	0.99874	other
CL2001032142AA	other	0.01706	0.98294	other
CL2001032144AA	SQUAMOUS	0.5284	0.4716	SQUAMOUS
CL2001032145AA (testset)	other	0.00015	0.99985	other
CL2001032147AA (testset)	other	0.02417	0.97583	other
CL2001032149AA (testset)	other	0.06437	0.93563	other
CL2001032151AA (testset)	other	0.00097	0.99903	other
CL2001032152AA	other	2e-05	0.99998	other
CL2001032153AA (testset)	SQUAMOUS	0.85999	0.14001	SQUAMOUS
CL2001032155AA	other	0.38239	0.61761	other
CL2001032156AA	other	0.02694	0.97306	other
CL2001032202AA	other	0.07272	0.92728	other
CL2001032206AA (testset)	other	0.04037	0.95963	other
CL2001032207AA	SQUAMOUS	0.9953	0.0047	SQUAMOUS
CL2001032209AA (testset)	SQUAMOUS	0.99985	0.00015	SQUAMOUS
CL2001032210AA	other	0.00157	0.99843	other
CL2001032211AA (testset)	other	0.01892	0.98108	other
CL2001032212AA (testset)	other	0.00081	0.99919	other
CL2001032213AA	other	0.06499	0.93501	other
CL2001032214AA	other	0.37787	0.62213	other
CL2001032217AA (testset)	other	0.00063	0.99937	other
CL2001032218AA	SQUAMOUS	0.99334	0.00666	SQUAMOUS
CL2001032219AA	other	0.00027	0.99973	other
CL2001032220AA	other	0.00212	0.99788	other
CL2001032222AA	SQUAMOUS	0.07889	0.92111	other
CL2001032229AA	other	0.00052	0.99948	other
CL2001032231AA	SQUAMOUS	0.41774	0.58226	other
CL2001032232AA (testset)	other	0.0169	0.9831	other
CL2001032233AA	other	9e-05	0.99991	other
CL2001032238AA (testset)	other	0.00053	0.99947	other
CL2001032239AA	SQUAMOUS	0.64136	0.35864	SQUAMOUS
CL2001032240AA	SQUAMOUS	0.94348	0.05652	SQUAMOUS
CL2001032241AA	other	0.00489	0.99511	other
CL2001032242AA	other	0.09717	0.90283	other
CL2001032243AA (testset)	other	0.00054	0.99946	other
CL2001032248AA	other	0.00555	0.99445	other
CL2001032249AA	other	0.00014	0.99986	other
CL2001032252AA	other	0.04254	0.95746	other
CL2001032254AA (testset)	other	0.00013	0.99987	other
CL2001032255AA (testset)	other	0.00034	0.99966	other
CL2001032256AA	other	0.00195	0.99805	other
CL2001032259AA (testset)	other	5e-05	0.99995	other
CL2001032260AA (testset)	other	0.00215	0.99785	other
CL2001032301AA	other	0.01882	0.98118	other
CL2001032304AA	other	0.00715	0.99285	other
CL2001032305AA (testset)	SQUAMOUS	0.1933	0.8067	other
CL2001032306AA	other	0.00469	0.99531	other
CL2001032307AA	other	0.01429	0.98571	other
CL2001032308AA	other	0.03008	0.96992	other
CL2001032309AA	other	0.00045	0.99955	other
CL2001032310AA	other	2e-05	0.99998	other
CL2001032311AA	other	0.00359	0.99641	other
CL2001032312AA	other	0.00399	0.99601	other
CL2001032313AA	other	0.00032	0.99968	other
CL2001032314AA	other	0.00087	0.99913	other
CL2001032316AA	other	0.00095	0.99905	other
CL2001032601AA	other	0.03868	0.96132	other
CL2001032602AA (testset)	other	0.00015	0.99985	other
CL2001032604AA (testset)	other	0.01026	0.98974	other
CL2001032607AA (testset)	other	0.00113	0.99887	other
CL2001032608AA	SQUAMOUS	0.92095	0.07905	SQUAMOUS
CL2001032610AA	other	0.00055	0.99945	other
CL2001032612AA	other	0.00014	0.99986	other
CL2001032613AA	other	0.00145	0.99855	other
CL2001032614AA (testset)	other	0.00033	0.99967	other
CL2001032616AA	other	0.00067	0.99933	other
CL2001032617AA	other	0.04793	0.95207	other
CL2001032620AA	other	6e-04	0.9994	other
CL2001032625AA	other	0.00013	0.99987	other
CL2001032627AA	SQUAMOUS	0.97752	0.02248	SQUAMOUS
CL2001032628AA	other	0.00087	0.99913	other
CL2001032629AA (testset)	other	0.00013	0.99987	other
CL2001032630AA (testset)	other	0.00096	0.99904	other
CL2001032632AA	other	0.02056	0.97944	other
CL2001032638AA	other	0.00061	0.99939	other
CL2001032640AA	other	0.0012	0.9988	other
CL2001032643AA	other	0.02689	0.97311	other
CL2001032644AA (testset)	SQUAMOUS	0.97992	0.02008	SQUAMOUS
CL2001032647AA	other	0.0049	0.9951	other
CL2001032701AA	other	0.00028	0.99972	other
CL2001032702AA	other	0.03397	0.96603	other
CL2001032703AA	other	0.04256	0.95744	other
CL2001032704AA	other	0.00593	0.99407	other
CL2001032706AA	other	0.0103	0.9897	other
CL2001032709AA (testset)	other	0.01888	0.98112	other
CL2001032716AA	other	0.00109	0.99891	other
CL2001032717AA (testset)	other	5e-05	0.99995	other
CL2001032718AA	other	0.00875	0.99125	other
CL2001032719AA (testset)	SQUAMOUS	0.84283	0.15717	SQUAMOUS
CL2001032720AA	other	0.00568	0.99432	other
CL2001032722AA	other	3e-04	0.9997	other
CL2001032724AA	other	0.006	0.994	other
CL2001032725AA (testset)	other	0.01681	0.98319	other
CL2001032727AA	other	0.00956	0.99044	other
CL2001032729AA	other	0.01046	0.98954	other
CL2001032730AA	other	0.00144	0.99856	other
CL2001032732AA	SQUAMOUS	0.23885	0.76115	other
CL2001032733AA (testset)	other	0.00044	0.99956	other
CL2001032738AA	other	0.0746	0.9254	other
CL2001032742AA (testset)	other	0.52611	0.47389	SQUAMOUS
CL2001032746AA (testset)	other	0.06492	0.93508	other
CL2001032747AA (testset)	other	0.00077	0.99923	other
CL2001032833AA (testset)	other	0.01157	0.98843	other
CL2001032836AA	other	0.02004	0.97996	other
CL2001032838AA	other	0.00299	0.99701	other
CL2001032839AA	other	0.00045	0.99955	other
CL2001032841AA	other	0.00019	0.99981	other
CL2001032842AA	other	0.05457	0.94543	other
CL2001032843AA	other	0.00014	0.99986	other
CL2001032845AA (testset)	other	0.00013	0.99987	other
CL2001032846AA (testset)	other	0.00011	0.99989	other
CL2001032847AA (testset)	other	5e-05	0.99995	other
CL2001032848AA	other	0.04712	0.95288	other
CL2001032850AA	other	8e-05	0.99992	other
CL2001032853AA	SQUAMOUS	0.99646	0.00354	SQUAMOUS
CL2001032854AA	other	0.00014	0.99986	other
CL2001032856AA	other	0.00092	0.99908	other
CL2001032857AA	other	3e-05	0.99997	other
CL2001032860AA	other	0.00026	0.99974	other
CL2001040305AA	other	7e-05	0.99993	other
CL2001040306AA	other	4e-04	0.9996	other
CL2001041708AA (testset)	other	0.00014	0.99986	other
CL2001041711AA	other	0.00058	0.99942	other
CL2001041716AA	other	6e-04	0.9994	other
CL2001042501AA	other	3e-05	0.99997	other
CL2001042505AA (testset)	other	5e-04	0.9995	other
CL2001042506AA	other	0.00195	0.99805	other