GO:0006461

GO:0006461

protein complex assembly (annotated genes)

Biological Process

Parent node

GO:0006461	protein complex assembly

This leaf node contains 114 genes

The following 56 of these are used in classification:

	Symbol	Genename	SQUAMOUS score	other score
32174_at	SLC9A3R1	solute carrier family 9 (sodium/hydrogen exchanger), isoform 3 regulatory factor 1	0.944	-0.1092
39704_s_at	HMGA1	high mobility group AT-hook 1	0.8569	-0.0991
41271_at	SLC7A8	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	0.7248	-0.0839
32589_at	CHAF1A	chromatin assembly factor 1, subunit A (p150)	0.5686	-0.0658
1688_s_at	MNAT1	menage a trois 1 (CAK assembly factor)	0.5008	-0.0579
548_s_at	SYK	spleen tyrosine kinase	0.4709	-0.0545
37190_at	WASF1	WAS protein family, member 1	0.3346	-0.0387
38352_at	PPIH	peptidyl prolyl isomerase H (cyclophilin H)	0.3237	-0.0374
38524_at	OCLN	occludin	-0.3232	0.0374
40910_at	CAPZA1	capping protein (actin filament) muscle Z-line, alpha 1	0.3225	-0.0373
1630_s_at	SYK	spleen tyrosine kinase	0.3169	-0.0367
37036_at	MDN1	MDN1, midasin homolog (yeast)	0.3038	-0.0351
33731_at	SLC7A7	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	-0.2921	0.0338
232_at	LAMC1	laminin, gamma 1 (formerly LAMB2)	0.2801	-0.0324
34344_at	IKBKAP	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein	0.2709	-0.0313
37469_at	KNTC1	kinetochore associated 1	0.2609	-0.0302
32615_at	DARS	aspartyl-tRNA synthetase	0.2301	-0.0266
1808_s_at	TNFRSF6	tumor necrosis factor receptor superfamily, member 6	-0.2227	0.0258
36989_at	DAG1	dystroglycan 1 (dystrophin-associated glycoprotein 1)	-0.1908	0.0221
41818_at	CARD10	caspase recruitment domain family, member 10	-0.1907	0.0221
36885_at	SYK	spleen tyrosine kinase	0.1867	-0.0216
37119_at	VAMP4	vesicle-associated membrane protein 4	0.1576	-0.0182
40985_g_at	76P	gamma tubulin ring complex protein (76p gene)	-0.1525	0.0176
39983_at	GLMN	glomulin, FKBP associated protein	0.1518	-0.0176
1093_at	PPP2R1B	protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform	-0.1488	0.0172
38963_i_at	WAS	Wiskott-Aldrich syndrome (eczema-thrombocytopenia)	0.1465	-0.017
35149_at	TNFRSF5	tumor necrosis factor receptor superfamily, member 5	0.1413	-0.0164
41757_at	VAPB	VAMP (vesicle-associated membrane protein)-associated protein B and C	0.1318	-0.0152
39875_at	WASL	Wiskott-Aldrich syndrome-like	-0.1296	0.015
922_at	PPP2R1A	protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform	0.1154	-0.0134
41816_at	CARD10	caspase recruitment domain family, member 10	-0.1151	0.0133
38387_at	MNAT1	menage a trois 1 (CAK assembly factor)	0.1056	-0.0122
36039_s_at	SH3BGR	SH3 domain binding glutamic acid-rich protein	-0.1042	0.0121
321_at	WASL	Wiskott-Aldrich syndrome-like	-0.1001	0.0116
36040_at	SH3BGR	SH3 domain binding glutamic acid-rich protein	-0.0915	0.0106
33919_at	TM4SF7	transmembrane 4 superfamily member 7	-0.0902	0.0104
37644_s_at	TNFRSF6	tumor necrosis factor receptor superfamily, member 6	-0.0864	0.01
40984_at	76P	gamma tubulin ring complex protein (76p gene)	0.0747	-0.0086
31606_at	RIMS1	regulating synaptic membrane exocytosis 1	0.0693	-0.008
35150_at	TNFRSF5	tumor necrosis factor receptor superfamily, member 5	0.0661	-0.0076
35725_at	KPNA3	karyopherin alpha 3 (importin alpha 4)	0.0608	-0.007
40940_at	VAPB	VAMP (vesicle-associated membrane protein)-associated protein B and C	-0.0367	0.0042
34451_at	MPP6	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	0.0343	-0.004
1912_s_at	APC	adenomatosis polyposis coli	-0.0338	0.0039
1746_s_at	TRAF2	TNF receptor-associated factor 2	-0.0332	0.0038
34701_at	DLG4	discs, large homolog 4 (Drosophila)	-0.0328	0.0038
1506_at	IL2RG	interleukin 2 receptor, gamma (severe combined immunodeficiency)	-0.0247	0.0029
33831_at	CREBBP	CREB binding protein (Rubinstein-Taybi syndrome)	0.0244	-0.0028
34655_at	MPP2	membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	-0.0212	0.0025
35433_s_at	APC	adenomatosis polyposis coli	-0.0173	0.002
41817_g_at	CARD10	caspase recruitment domain family, member 10	0.0157	-0.0018
36277_at	CD3E	CD3E antigen, epsilon polypeptide (TiT3 complex)	0.0128	-0.0015
33784_at	TRAF2	TNF receptor-associated factor 2	-0.0047	5e-04
40779_at	KIFAP3	kinesin-associated protein 3	0.0013	-1e-04
35784_at	VAMP3	vesicle-associated membrane protein 3 (cellubrevin)	0.0011	-1e-04
40942_g_at	VAPB	VAMP (vesicle-associated membrane protein)-associated protein B and C	-6e-04	1e-04

Performance on training data

• Error rate: 0.04444
• Performance: 0.20323
• Redundancy: 3.79735

	Sensitivity	Specificity
SQUAMOUS	0.85714	0.96694
other	0.96694	0.85714

Performance on test data

• Error rate: 0.02941
• Performance: 0.12009
• Redundancy: 4.28539

	Sensitivity	Specificity
SQUAMOUS	0.85714	0.98361
other	0.98361	0.85714

Predictions

	Class	SQUAMOUS	other	Predictionn
CL2001031606AA (testset)	SQUAMOUS	0.98095	0.01905	SQUAMOUS
CL2001031607AA	other	0.14762	0.85238	other
CL2001031608AA	other	0.00636	0.99364	other
CL2001031609AA (testset)	other	7e-05	0.99993	other
CL2001031611AA	other	0.03746	0.96254	other
CL2001031612AA (testset)	other	0.51377	0.48623	SQUAMOUS
CL2001031613AA (testset)	other	0.49101	0.50899	other
CL2001031615AA (testset)	other	0.00792	0.99208	other
CL2001031616AA	other	0.09126	0.90874	other
CL2001031618AA	other	0.00024	0.99976	other
CL2001031620AA	SQUAMOUS	0.88313	0.11687	SQUAMOUS
CL2001031621AA	SQUAMOUS	0.99856	0.00144	SQUAMOUS
CL2001031622AA	other	0.89621	0.10379	SQUAMOUS
CL2001031625AA	other	0.00189	0.99811	other
CL2001031627AA (testset)	other	0.00727	0.99273	other
CL2001031628AA	other	4e-04	0.9996	other
CL2001031629AA	other	0.02581	0.97419	other
CL2001031630AA	other	0.00032	0.99968	other
CL2001031631AA (testset)	other	0.00271	0.99729	other
CL2001031632AA	other	0.01169	0.98831	other
CL2001031634AA	other	0.00967	0.99033	other
CL2001031635AA (testset)	other	0.00994	0.99006	other
CL2001031636AA (testset)	other	0.27647	0.72353	other
CL2001032002AA	other	0.00023	0.99977	other
CL2001032005AA	other	0.04398	0.95602	other
CL2001032008AA	other	0.59603	0.40397	SQUAMOUS
CL2001032009AA	other	0.01104	0.98896	other
CL2001032010AA	other	0.0021	0.9979	other
CL2001032011AA	other	0.00406	0.99594	other
CL2001032012AA	other	0.00087	0.99913	other
CL2001032013AA	other	0.00187	0.99813	other
CL2001032015AA (testset)	other	0.0052	0.9948	other
CL2001032016AA (testset)	other	0.00089	0.99911	other
CL2001032019AA	other	0.00839	0.99161	other
CL2001032020AA (testset)	other	0.01992	0.98008	other
CL2001032025AA (testset)	other	0.00018	0.99982	other
CL2001032026AA	other	0.00056	0.99944	other
CL2001032027AA (testset)	other	0.11915	0.88085	other
CL2001032030AA (testset)	other	0.13431	0.86569	other
CL2001032031AA (testset)	other	0.0087	0.9913	other
CL2001032032AA	other	0.00035	0.99965	other
CL2001032034AA (testset)	other	0.00345	0.99655	other
CL2001032036AA	other	0.0861	0.9139	other
CL2001032041AA (testset)	other	0.00569	0.99431	other
CL2001032043AA	other	0.00222	0.99778	other
CL2001032044AA	other	0.00013	0.99987	other
CL2001032045AA (testset)	other	0.00079	0.99921	other
CL2001032046AA	other	0.00252	0.99748	other
CL2001032101AA	other	0.00144	0.99856	other
CL2001032102AA	other	0.00084	0.99916	other
CL2001032103AA	other	0.00026	0.99974	other
CL2001032104AA	other	0.00069	0.99931	other
CL2001032105AA	other	0.00642	0.99358	other
CL2001032107AA	other	0.00334	0.99666	other
CL2001032108AA (testset)	other	0.00055	0.99945	other
CL2001032109AA (testset)	other	0.00122	0.99878	other
CL2001032110AA	other	0.00671	0.99329	other
CL2001032111AA (testset)	other	0.00613	0.99387	other
CL2001032113AA	other	0.00127	0.99873	other
CL2001032114AA	other	0.00278	0.99722	other
CL2001032115AA	other	0.00018	0.99982	other
CL2001032116AA	other	0.00254	0.99746	other
CL2001032117AA (testset)	other	0.01512	0.98488	other
CL2001032121AA	other	0.06372	0.93628	other
CL2001032122AA	SQUAMOUS	0.86654	0.13346	SQUAMOUS
CL2001032124AA (testset)	other	0.00169	0.99831	other
CL2001032125AA	other	0.0124	0.9876	other
CL2001032127AA (testset)	other	0.00013	0.99987	other
CL2001032128AA (testset)	other	0.00378	0.99622	other
CL2001032129AA (testset)	SQUAMOUS	0.91692	0.08308	SQUAMOUS
CL2001032130AA	other	0.06017	0.93983	other
CL2001032132AA (testset)	other	0.00376	0.99624	other
CL2001032134AA	other	0.05539	0.94461	other
CL2001032135AA	other	0.15426	0.84574	other
CL2001032136AA (testset)	other	0.20198	0.79802	other
CL2001032138AA	other	0.01413	0.98587	other
CL2001032141AA	other	0.03394	0.96606	other
CL2001032142AA	other	0.11882	0.88118	other
CL2001032144AA	SQUAMOUS	0.9456	0.0544	SQUAMOUS
CL2001032145AA (testset)	other	0.00019	0.99981	other
CL2001032147AA (testset)	other	0.00143	0.99857	other
CL2001032149AA (testset)	other	0.03582	0.96418	other
CL2001032151AA (testset)	other	7e-05	0.99993	other
CL2001032152AA	other	0.00019	0.99981	other
CL2001032153AA (testset)	SQUAMOUS	0.37755	0.62245	other
CL2001032155AA	other	0.74179	0.25821	SQUAMOUS
CL2001032156AA	other	0.07756	0.92244	other
CL2001032202AA	other	0.00055	0.99945	other
CL2001032206AA (testset)	other	0.00443	0.99557	other
CL2001032207AA	SQUAMOUS	0.97771	0.02229	SQUAMOUS
CL2001032209AA (testset)	SQUAMOUS	0.99999	1e-05	SQUAMOUS
CL2001032210AA	other	0.00054	0.99946	other
CL2001032211AA (testset)	other	0.0073	0.9927	other
CL2001032212AA (testset)	other	0.00082	0.99918	other
CL2001032213AA	other	0.01678	0.98322	other
CL2001032214AA	other	0.01402	0.98598	other
CL2001032217AA (testset)	other	0.01727	0.98273	other
CL2001032218AA	SQUAMOUS	0.57741	0.42259	SQUAMOUS
CL2001032219AA	other	0.00012	0.99988	other
CL2001032220AA	other	0.00044	0.99956	other
CL2001032222AA	SQUAMOUS	0.81837	0.18163	SQUAMOUS
CL2001032229AA	other	0.00285	0.99715	other
CL2001032231AA	SQUAMOUS	0.2053	0.7947	other
CL2001032232AA (testset)	other	0.00296	0.99704	other
CL2001032233AA	other	0.0025	0.9975	other
CL2001032238AA (testset)	other	5e-05	0.99995	other
CL2001032239AA	SQUAMOUS	0.99172	0.00828	SQUAMOUS
CL2001032240AA	SQUAMOUS	0.92437	0.07563	SQUAMOUS
CL2001032241AA	other	0.0039	0.9961	other
CL2001032242AA	other	0.05613	0.94387	other
CL2001032243AA (testset)	other	0.00192	0.99808	other
CL2001032248AA	other	0.58601	0.41399	SQUAMOUS
CL2001032249AA	other	0.00052	0.99948	other
CL2001032252AA	other	0.48207	0.51793	other
CL2001032254AA (testset)	other	0.00146	0.99854	other
CL2001032255AA (testset)	other	0.00141	0.99859	other
CL2001032256AA	other	0.01899	0.98101	other
CL2001032259AA (testset)	other	0.00036	0.99964	other
CL2001032260AA (testset)	other	0.00137	0.99863	other
CL2001032301AA	other	0.01979	0.98021	other
CL2001032304AA	other	0.02769	0.97231	other
CL2001032305AA (testset)	SQUAMOUS	0.84942	0.15058	SQUAMOUS
CL2001032306AA	other	0.04604	0.95396	other
CL2001032307AA	other	0.01335	0.98665	other
CL2001032308AA	other	0.00639	0.99361	other
CL2001032309AA	other	0.00023	0.99977	other
CL2001032310AA	other	0.00129	0.99871	other
CL2001032311AA	other	0.2943	0.7057	other
CL2001032312AA	other	0.00114	0.99886	other
CL2001032313AA	other	0.00022	0.99978	other
CL2001032314AA	other	0.0043	0.9957	other
CL2001032316AA	other	0.05215	0.94785	other
CL2001032601AA	other	0.04784	0.95216	other
CL2001032602AA (testset)	other	0.00524	0.99476	other
CL2001032604AA (testset)	other	0.00056	0.99944	other
CL2001032607AA (testset)	other	9e-05	0.99991	other
CL2001032608AA	SQUAMOUS	0.71328	0.28672	SQUAMOUS
CL2001032610AA	other	0.02286	0.97714	other
CL2001032612AA	other	0.00298	0.99702	other
CL2001032613AA	other	0.00154	0.99846	other
CL2001032614AA (testset)	other	0.00832	0.99168	other
CL2001032616AA	other	0.00097	0.99903	other
CL2001032617AA	other	0.02148	0.97852	other
CL2001032620AA	other	0.00256	0.99744	other
CL2001032625AA	other	0.00067	0.99933	other
CL2001032627AA	SQUAMOUS	0.97308	0.02692	SQUAMOUS
CL2001032628AA	other	0.00063	0.99937	other
CL2001032629AA (testset)	other	4e-05	0.99996	other
CL2001032630AA (testset)	other	0.00164	0.99836	other
CL2001032632AA	other	0.01576	0.98424	other
CL2001032638AA	other	0.01889	0.98111	other
CL2001032640AA	other	0.00139	0.99861	other
CL2001032643AA	other	0.03571	0.96429	other
CL2001032644AA (testset)	SQUAMOUS	0.98738	0.01262	SQUAMOUS
CL2001032647AA	other	0.01112	0.98888	other
CL2001032701AA	other	0.00118	0.99882	other
CL2001032702AA	other	0.01533	0.98467	other
CL2001032703AA	other	0.29699	0.70301	other
CL2001032704AA	other	0.04098	0.95902	other
CL2001032706AA	other	0.01162	0.98838	other
CL2001032709AA (testset)	other	0.00133	0.99867	other
CL2001032716AA	other	0.04505	0.95495	other
CL2001032717AA (testset)	other	0.00879	0.99121	other
CL2001032718AA	other	0.00347	0.99653	other
CL2001032719AA (testset)	SQUAMOUS	0.96151	0.03849	SQUAMOUS
CL2001032720AA	other	0.01924	0.98076	other
CL2001032722AA	other	0.00082	0.99918	other
CL2001032724AA	other	0.00111	0.99889	other
CL2001032725AA (testset)	other	0.00028	0.99972	other
CL2001032727AA	other	0.00073	0.99927	other
CL2001032729AA	other	0.07098	0.92902	other
CL2001032730AA	other	0.00357	0.99643	other
CL2001032732AA	SQUAMOUS	0.46716	0.53284	other
CL2001032733AA (testset)	other	0.00186	0.99814	other
CL2001032738AA	other	0.12056	0.87944	other
CL2001032742AA (testset)	other	0.18566	0.81434	other
CL2001032746AA (testset)	other	0.03761	0.96239	other
CL2001032747AA (testset)	other	0.01578	0.98422	other
CL2001032833AA (testset)	other	0.02043	0.97957	other
CL2001032836AA	other	0.42002	0.57998	other
CL2001032838AA	other	0.00188	0.99812	other
CL2001032839AA	other	0.12699	0.87301	other
CL2001032841AA	other	0.00041	0.99959	other
CL2001032842AA	other	0.25181	0.74819	other
CL2001032843AA	other	0.00529	0.99471	other
CL2001032845AA (testset)	other	0.00666	0.99334	other
CL2001032846AA (testset)	other	0.00034	0.99966	other
CL2001032847AA (testset)	other	0.00045	0.99955	other
CL2001032848AA	other	0.00848	0.99152	other
CL2001032850AA	other	0.00075	0.99925	other
CL2001032853AA	SQUAMOUS	0.97611	0.02389	SQUAMOUS
CL2001032854AA	other	0.00022	0.99978	other
CL2001032856AA	other	0.00105	0.99895	other
CL2001032857AA	other	0.00058	0.99942	other
CL2001032860AA	other	0.00023	0.99977	other
CL2001040305AA	other	0.01034	0.98966	other
CL2001040306AA	other	0.00077	0.99923	other
CL2001041708AA (testset)	other	0.00239	0.99761	other
CL2001041711AA	other	0.00039	0.99961	other
CL2001041716AA	other	0.02266	0.97734	other
CL2001042501AA	other	3e-05	0.99997	other
CL2001042505AA (testset)	other	0.06034	0.93966	other
CL2001042506AA	other	0.01226	0.98774	other