GO:0005975


GO:0005975

carbohydrate metabolism
(annotated genes)

Biological
Process

Parent node

This leaf node contains 124 genes

The following 124 of these are used in classification:

 SymbolGenenameSQUAMOUS scoreother score
39432_atB4GALT4 UDP-Gal1.0117-0.1171
40031_atALDH3A1 aldehyde dehydrogenase 3 family, memberA10.861-0.0996
39122_atGPI glucose phosphate isomerase0.8173-0.0946
40111_g_atIDH3B isocitrate dehydrogenase 3 (NAD+) beta0.7626-0.0882
37779_atASML3B acid sphingomyelinase-like phosphodiesterase-0.73780.0854
37686_s_atUNG uracil-DNA glycosylase0.6697-0.0775
837_s_atME1 malic enzyme 1, NADP(+)-dependent, cytosolic0.6588-0.0762
38029_atSLC3A2 solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 20.5965-0.069
40112_atIDH3B isocitrate dehydrogenase 3 (NAD+) beta0.5887-0.0681
38394_atKIAA0089 KIAA0089 protein-0.53410.0618
36480_atPHKA2 phosphorylase kinase, alpha 2 (liver)0.5299-0.0613
37742_atGLB1 galactosidase, beta 1-0.52030.0602
38667_atCGI-150 CGI-150 protein0.5201-0.0602
37042_atHYAL2 hyaluronoglucosaminidase 2-0.49650.0574
36680_atAMY2B amylase, alpha 2B; pancreatic-0.48240.0558
37371_atSMPD1 sphingomyelin phosphodiesterase 1, acid lysosomal (acid sphingomyelinase)-0.46870.0542
38975_atGENX-3414 genethonin 1-0.46610.0539
37076_atSLC2A4 solute carrier family 2 (facilitated glucose transporter), member 4-0.45390.0525
41814_atFUCA1 fucosidase, alpha-L- 1, tissue-0.45240.0523
38129_atGK glycerol kinase-0.43510.0503
34469_atABO ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)0.4334-0.0501
35529_atTREH trehalase (brush-border membrane glycoprotein)-0.42660.0494
37040_atG2AN alpha glucosidase II alpha subunit0.4213-0.0487
39369_atKIAA0935 mannosidase alpha class 2B member 2-0.41650.0482
36484_atGALNT3 UDP-N-acetyl-alpha-D-galactosamine0.4098-0.0474
31824_atME1 malic enzyme 1, NADP(+)-dependent, cytosolic0.4095-0.0474
34177_atB4GALT2 UDP-Gal0.3949-0.0457
40325_atNTHL1 nth endonuclease III-like 1 (E. coli)-0.38940.0451
37061_atCHIT1 chitinase 1 (chitotriosidase)-0.38940.0451
32747_atALDH2 aldehyde dehydrogenase 2 family (mitochondrial)-0.38330.0443
31798_atTFF1 trefoil factor 1 (breast cancer, estrogen-inducible sequence expressed in)-0.37850.0438
31598_s_atGALE galactose-4-epimerase, UDP--0.36380.0421
33308_atGUSB glucuronidase, beta-0.35340.0409
40678_atSIAT8A sialyltransferase 8A (alpha-N-acetylneuraminate-0.34480.0399
37617_atKIAA1128 KIAA1128 protein-0.32380.0375
38333_atOGG1 8-oxoguanine DNA glycosylase-0.3070.0355
39613_atMAN1A1 mannosidase, alpha, class 1A, member 1-0.29920.0346
38495_s_atFUT3 fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included)-0.27740.0321
38503_atALDH1B1 aldehyde dehydrogenase 1 family, member B1-0.27380.0317
39075_atNEU1 sialidase 1 (lysosomal sialidase)-0.260.0301
38212_atGALGT UDP-N-acetyl-alpha-D-galactosamine-0.25340.0293
37372_atSMPD1 sphingomyelin phosphodiesterase 1, acid lysosomal (acid sphingomyelinase)-0.25090.029
34332_atGNPDA1 glucosamine-6-phosphate deaminase 10.2459-0.0285
36667_atPYGB phosphorylase, glycogen; brain0.2418-0.028
38188_s_atMAN2A2 mannosidase, alpha, class 2A, member 2-0.23910.0277
32917_atLCT lactase-0.23780.0275
41596_s_atNAGLU N-acetylglucosaminidase, alpha- (Sanfilippo disease IIIB)-0.2370.0274
39888_atB4GALT5 UDP-Gal0.2352-0.0272
35071_s_atGMDS GDP-mannose 4,6-dehydratase-0.23390.0271
39663_atMAN2A1 mannosidase, alpha, class 2A, member 1-0.23350.027
32210_atPGM1 phosphoglucomutase 1-0.23020.0266
36195_atIDH3A isocitrate dehydrogenase 3 (NAD+) alpha-0.22790.0264
41643_atSMA5 SMA5-0.22410.0259
35100_atSIAT8C sialyltransferase 8C (alpha2,3Galbeta1,4GlcNAcalpha 2,8-sialyltransferase)-0.22060.0255
1546_atHYAL1 hyaluronoglucosaminidase 1-0.21390.0248
38304_r_atKL klotho-0.20480.0237
34147_g_atOGG1 8-oxoguanine DNA glycosylase-0.20450.0237
40716_atMAN1C1 mannosidase, alpha, class 1C, member 1-0.20170.0233
41298_atMAN1A2 mannosidase, alpha, class 1A, member 2-0.20070.0232
38130_s_atGK glycerol kinase-0.19860.023
33936_atGALC galactosylceramidase (Krabbe disease)-0.19850.023
33547_i_atFUT2 fucosyltransferase 2 (secretor status included)-0.19660.0227
34362_atSLC2A5 solute carrier family 2 (facilitated glucose/fructose transporter), member 5-0.19580.0227
39778_atMGAT1 mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase0.1915-0.0222
41297_atMAN1A2 mannosidase, alpha, class 1A, member 2-0.19140.0221
41642_atSMA5 SMA5-0.18960.0219
38334_g_atOGG1 8-oxoguanine DNA glycosylase-0.1850.0214
37311_atTALDO1 transaldolase 10.1847-0.0214
33644_atME1 malic enzyme 1, NADP(+)-dependent, cytosolic-0.180.0208
37176_atHYAL1 hyaluronoglucosaminidase 1-0.17930.0207
39889_atB4GALT5 UDP-Gal-0.17740.0205
38213_atGLA galactosidase, alpha-0.17570.0203
33694_atPGM5 phosphoglucomutase 5-0.17470.0202
33162_atINSR insulin receptor-0.17440.0202
37895_atSLC35A1 solute carrier family 35 (CMP-sialic acid transporter), member A1-0.17070.0198
34670_atMAN2B1 mannosidase, alpha, class 2B, member 1-0.17070.0197
37797_atRPE ribulose-5-phosphate-3-epimerase0.1673-0.0194
32574_atSMPD1 sphingomyelin phosphodiesterase 1, acid lysosomal (acid sphingomyelinase)-0.15620.0181
36833_atGLA galactosidase, alpha0.1421-0.0164
37855_atCTBS chitobiase, di-N-acetyl--0.14130.0164
39340_atHEXA hexosaminidase A (alpha polypeptide)-0.14110.0163
40337_atFUT1 fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase)-0.14020.0162
38238_atSLC2A2 solute carrier family 2 (facilitated glucose transporter), member 2-0.13950.0161
32921_atSMA4 SMA4-0.1380.016
37059_atGCKR glucokinase (hexokinase 4) regulatory protein-0.1370.0159
36673_atMPI mannose phosphate isomerase0.1365-0.0158
32008_atFUT9 fucosyltransferase 9 (alpha (1,3) fucosyltransferase)-0.13570.0157
33465_atADRB3 adrenergic, beta-3-, receptor0.1291-0.0149
38335_atOGG1 8-oxoguanine DNA glycosylase-0.12860.0149
35419_g_atHEXA hexosaminidase A (alpha polypeptide)0.1275-0.0148
40553_atSMA5 SMA5-0.12270.0142
37472_atMANBA mannosidase, beta A, lysosomal-0.11110.0129
39641_atUNG2 uracil-DNA glycosylase 20.1094-0.0127
36574_atIDH3G isocitrate dehydrogenase 3 (NAD+) gamma0.1093-0.0126
33099_atFUT5 fucosyltransferase 5 (alpha (1,3) fucosyltransferase)-0.10630.0123
35418_atHEXA hexosaminidase A (alpha polypeptide)0.1032-0.0119
34249_atEPM2A epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)-0.09310.0108
34066_atH6PD hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)-0.09230.0107
40293_atFBP2 fructose-1,6-bisphosphatase 20.0878-0.0102
36979_atSLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3-0.08710.0101
32510_atAKR7A2 aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)0.0859-0.0099
41766_atMAN2A2 mannosidase, alpha, class 2A, member 20.0801-0.0093
32697_atIMPA1 inositol(myo)-1(or 4)-monophosphatase 1-0.07370.0085
34150_atHGNT-IV-H UDP-N-acetylglucosamine0.0708-0.0082
40110_atIDH3B isocitrate dehydrogenase 3 (NAD+) beta0.0705-0.0082
33548_f_atFUT2 fucosyltransferase 2 (secretor status included)-0.06990.0081
41305_atSLC5A2 solute carrier family 5 (sodium/glucose cotransporter), member 2-0.06780.0078
37608_g_atKHK ketohexokinase (fructokinase)0.0678-0.0078
35129_atSPAM1 sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding)-0.06680.0077
37606_atKHK ketohexokinase (fructokinase)0.0625-0.0072
38956_atNAGPA N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-0.05880.0068
34048_atGK2 glycerol kinase 2-0.04830.0056
32942_atSIAT8E sialyltransferase 8E (alpha-2, 8-polysialyltransferase)0.0476-0.0055
39267_atPGM3 phosphoglucomutase 3-0.04490.0052
39445_atB4GALT3 UDP-Gal0.0402-0.0046
35540_atHYAL3 hyaluronoglucosaminidase 30.0337-0.0039
34888_atHEXB hexosaminidase B (beta polypeptide)-0.03310.0038
37607_atKHK ketohexokinase (fructokinase)-0.03240.0037
39210_atFUT4 fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)-0.02410.0028
36366_atB4GALT6 UDP-Gal0.019-0.0022
1572_s_atINSR insulin receptor0.019-0.0022
39284_atSLC3A1 solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 10.0133-0.0015
36483_atGALNT3 UDP-N-acetyl-alpha-D-galactosamine0.0113-0.0013
34146_atOGG1 8-oxoguanine DNA glycosylase0.0012-1e-04

Performance on training data

 SensitivitySpecificity
SQUAMOUS0.928570.99174
other0.991740.92857

Performance on test data

 SensitivitySpecificity
SQUAMOUS0.857140.96721
other0.967210.85714

Predictions

 ClassSQUAMOUSotherPredictionn
CL2001031606AA (testset)SQUAMOUS0.999890.00011 SQUAMOUS
CL2001031607AAother0.012530.98747 other
CL2001031608AAother01 other
CL2001031609AA (testset)other0.000170.99983 other
CL2001031611AAother0.05870.9413 other
CL2001031612AA (testset)other0.003570.99643 other
CL2001031613AA (testset)other1e-050.99999 other
CL2001031615AA (testset)other0.001240.99876 other
CL2001031616AAother0.23850.7615 other
CL2001031618AAother01 other
CL2001031620AASQUAMOUS0.583930.41607 SQUAMOUS
CL2001031621AASQUAMOUS10 SQUAMOUS
CL2001031622AAother0.446920.55308 other
CL2001031625AAother01 other
CL2001031627AA (testset)other5e-050.99995 other
CL2001031628AAother01 other
CL2001031629AAother0.001390.99861 other
CL2001031630AAother01 other
CL2001031631AA (testset)other0.000320.99968 other
CL2001031632AAother0.000760.99924 other
CL2001031634AAother01 other
CL2001031635AA (testset)other01 other
CL2001031636AA (testset)other0.560030.43997 SQUAMOUS
CL2001032002AAother0.004280.99572 other
CL2001032005AAother0.032580.96742 other
CL2001032008AAother0.819530.18047 SQUAMOUS
CL2001032009AAother3e-050.99997 other
CL2001032010AAother01 other
CL2001032011AAother01 other
CL2001032012AAother01 other
CL2001032013AAother01 other
CL2001032015AA (testset)other0.000280.99972 other
CL2001032016AA (testset)other1e-050.99999 other
CL2001032019AAother01 other
CL2001032020AA (testset)other01 other
CL2001032025AA (testset)other01 other
CL2001032026AAother2e-050.99998 other
CL2001032027AA (testset)other5e-040.9995 other
CL2001032030AA (testset)other3e-050.99997 other
CL2001032031AA (testset)other0.001120.99888 other
CL2001032032AAother01 other
CL2001032034AA (testset)other3e-050.99997 other
CL2001032036AAother0.047240.95276 other
CL2001032041AA (testset)other8e-050.99992 other
CL2001032043AAother01 other
CL2001032044AAother1e-050.99999 other
CL2001032045AA (testset)other01 other
CL2001032046AAother01 other
CL2001032101AAother2e-050.99998 other
CL2001032102AAother01 other
CL2001032103AAother9e-050.99991 other
CL2001032104AAother0.002230.99777 other
CL2001032105AAother1e-050.99999 other
CL2001032107AAother01 other
CL2001032108AA (testset)other01 other
CL2001032109AA (testset)other01 other
CL2001032110AAother01 other
CL2001032111AA (testset)other01 other
CL2001032113AAother2e-050.99998 other
CL2001032114AAother01 other
CL2001032115AAother01 other
CL2001032116AAother01 other
CL2001032117AA (testset)other8e-050.99992 other
CL2001032121AAother0.11830.8817 other
CL2001032122AASQUAMOUS0.993810.00619 SQUAMOUS
CL2001032124AA (testset)other01 other
CL2001032125AAother0.018060.98194 other
CL2001032127AA (testset)other0.00340.9966 other
CL2001032128AA (testset)other1e-050.99999 other
CL2001032129AA (testset)SQUAMOUS0.998560.00144 SQUAMOUS
CL2001032130AAother0.031790.96821 other
CL2001032132AA (testset)other01 other
CL2001032134AAother0.001840.99816 other
CL2001032135AAother3e-050.99997 other
CL2001032136AA (testset)other0.009660.99034 other
CL2001032138AAother01 other
CL2001032141AAother0.000780.99922 other
CL2001032142AAother0.001220.99878 other
CL2001032144AASQUAMOUS0.999860.00014 SQUAMOUS
CL2001032145AA (testset)other4e-050.99996 other
CL2001032147AA (testset)other01 other
CL2001032149AA (testset)other9e-050.99991 other
CL2001032151AA (testset)other1e-040.9999 other
CL2001032152AAother8e-050.99992 other
CL2001032153AA (testset)SQUAMOUS0.998760.00124 SQUAMOUS
CL2001032155AAother0.000380.99962 other
CL2001032156AAother0.00270.9973 other
CL2001032202AAother01 other
CL2001032206AA (testset)other2e-050.99998 other
CL2001032207AASQUAMOUS0.999937e-05 SQUAMOUS
CL2001032209AA (testset)SQUAMOUS10 SQUAMOUS
CL2001032210AAother2e-050.99998 other
CL2001032211AA (testset)other0.002760.99724 other
CL2001032212AA (testset)other0.031020.96898 other
CL2001032213AAother0.001230.99877 other
CL2001032214AAother0.001770.99823 other
CL2001032217AA (testset)other0.001380.99862 other
CL2001032218AASQUAMOUS0.975770.02423 SQUAMOUS
CL2001032219AAother0.000430.99957 other
CL2001032220AAother01 other
CL2001032222AASQUAMOUS0.695540.30446 SQUAMOUS
CL2001032229AAother2e-050.99998 other
CL2001032231AASQUAMOUS0.137580.86242 other
CL2001032232AA (testset)other01 other
CL2001032233AAother1e-050.99999 other
CL2001032238AA (testset)other01 other
CL2001032239AASQUAMOUS0.996560.00344 SQUAMOUS
CL2001032240AASQUAMOUS0.998750.00125 SQUAMOUS
CL2001032241AAother01 other
CL2001032242AAother0.001650.99835 other
CL2001032243AA (testset)other01 other
CL2001032248AAother0.192010.80799 other
CL2001032249AAother01 other
CL2001032252AAother0.000240.99976 other
CL2001032254AA (testset)other01 other
CL2001032255AA (testset)other0.000540.99946 other
CL2001032256AAother01 other
CL2001032259AA (testset)other01 other
CL2001032260AA (testset)other4e-040.9996 other
CL2001032301AAother0.003080.99692 other
CL2001032304AAother2e-040.9998 other
CL2001032305AA (testset)SQUAMOUS0.999240.00076 SQUAMOUS
CL2001032306AAother5e-050.99995 other
CL2001032307AAother4e-050.99996 other
CL2001032308AAother0.000930.99907 other
CL2001032309AAother01 other
CL2001032310AAother2e-050.99998 other
CL2001032311AAother0.001240.99876 other
CL2001032312AAother1e-050.99999 other
CL2001032313AAother0.000580.99942 other
CL2001032314AAother1e-050.99999 other
CL2001032316AAother01 other
CL2001032601AAother0.009360.99064 other
CL2001032602AA (testset)other1e-050.99999 other
CL2001032604AA (testset)other0.000820.99918 other
CL2001032607AA (testset)other0.000190.99981 other
CL2001032608AASQUAMOUS0.915530.08447 SQUAMOUS
CL2001032610AAother0.003460.99654 other
CL2001032612AAother0.008090.99191 other
CL2001032613AAother1e-050.99999 other
CL2001032614AA (testset)other0.000330.99967 other
CL2001032616AAother01 other
CL2001032617AAother0.013230.98677 other
CL2001032620AAother01 other
CL2001032625AAother01 other
CL2001032627AASQUAMOUS0.999991e-05 SQUAMOUS
CL2001032628AAother01 other
CL2001032629AA (testset)other01 other
CL2001032630AA (testset)other1e-050.99999 other
CL2001032632AAother0.006430.99357 other
CL2001032638AAother0.001080.99892 other
CL2001032640AAother0.00390.9961 other
CL2001032643AAother0.041170.95883 other
CL2001032644AA (testset)SQUAMOUS0.999750.00025 SQUAMOUS
CL2001032647AAother01 other
CL2001032701AAother2e-050.99998 other
CL2001032702AAother0.000690.99931 other
CL2001032703AAother0.012850.98715 other
CL2001032704AAother1e-050.99999 other
CL2001032706AAother1e-050.99999 other
CL2001032709AA (testset)other0.000120.99988 other
CL2001032716AAother0.000190.99981 other
CL2001032717AA (testset)other3e-050.99997 other
CL2001032718AAother01 other
CL2001032719AA (testset)SQUAMOUS0.051150.94885 other
CL2001032720AAother0.063290.93671 other
CL2001032722AAother2e-050.99998 other
CL2001032724AAother01 other
CL2001032725AA (testset)other01 other
CL2001032727AAother01 other
CL2001032729AAother2e-050.99998 other
CL2001032730AAother01 other
CL2001032732AASQUAMOUS0.76120.2388 SQUAMOUS
CL2001032733AA (testset)other01 other
CL2001032738AAother0.001140.99886 other
CL2001032742AA (testset)other0.946690.05331 SQUAMOUS
CL2001032746AA (testset)other0.002550.99745 other
CL2001032747AA (testset)other0.021410.97859 other
CL2001032833AA (testset)other0.000140.99986 other
CL2001032836AAother0.055860.94414 other
CL2001032838AAother4e-050.99996 other
CL2001032839AAother0.001840.99816 other
CL2001032841AAother01 other
CL2001032842AAother0.004540.99546 other
CL2001032843AAother1e-050.99999 other
CL2001032845AA (testset)other01 other
CL2001032846AA (testset)other0.000350.99965 other
CL2001032847AA (testset)other01 other
CL2001032848AAother7e-050.99993 other
CL2001032850AAother2e-050.99998 other
CL2001032853AASQUAMOUS0.999991e-05 SQUAMOUS
CL2001032854AAother4e-050.99996 other
CL2001032856AAother6e-050.99994 other
CL2001032857AAother01 other
CL2001032860AAother0.000910.99909 other
CL2001040305AAother0.008260.99174 other
CL2001040306AAother01 other
CL2001041708AA (testset)other4e-050.99996 other
CL2001041711AAother01 other
CL2001041716AAother01 other
CL2001042501AAother1e-050.99999 other
CL2001042505AA (testset)other0.009320.99068 other
CL2001042506AAother0.000330.99967 other

 


Generated by StAM on Tue Sep 7 17:28:23 2004