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| Total number of samples: | 203 |
|---|---|
| Training samples: | 203 ( 17 from NORMAL, 186 from other ) |
| Test samples: | 203 ( 17 from NORMAL, 186 from other ) |
| Focus on class: | NORMAL |
| Data frm chip: | hgu95av2 |
| Start node: | GO:0008150 ( biological_process ) |
| Chip annotations for: | hgu95av2 |
|---|---|
| Chip data package: | data package version 1.5.1 Mon May 10 11:12:58 2004 |
| GO data package: | GO package version 1.5.1 Mon May 10 11:46:39 2004 |
| Root node chosen: | GO:0008150 ( biological_process ) |
| Number of probesets on the chip: | 12625 |
| Probesets annotated below GO:0008150 : | 8679 |
| Number of nodes with direct annotations: | 1359 |
| Total number of nodes: | 2204 |
| Number of samples: | 203 |
|---|---|
| Number of classes: | 2 |
| Class weights: | 'NORMAL': 0.01 'other': 0.99 |
| Class prior: | 'NORMAL':0.084 'other':0.916 |
| Shrinkage candidates: | 0, 0.025, 0.049, 0.074, 0.099, 0.124, 0.148, 0.173, 0.198, 0.222, 0.247, 0.272, 0.297, 0.321, 0.346, 0.371, 0.395, 0.42, 0.445, 0.47, 0.494, 0.519, 0.544, 0.568, 0.593, 0.618, 0.643, 0.667, 0.692, 0.717 |
| Root.error.rate | Root.performance | Mean.redundancy | Nodes | Genes | |
|---|---|---|---|---|---|
| 0 | 0.02463 | 0.17971 | 1.93507 | 2203 | 8612 |
| 0.025 | 0.02463 | 0.17957 | 1.93515 | 2203 | 8612 |
| 0.049 | 0.02463 | 0.1794 | 1.93524 | 2203 | 8612 |
| 0.074 | 0.02463 | 0.17922 | 1.93534 | 2203 | 8612 |
| 0.099 | 0.02463 | 0.17903 | 1.93545 | 2203 | 8612 |
| 0.124 | 0.0197 | 0.17881 | 1.93526 | 2202 | 8576 |
| 0.148 | 0.0197 | 0.17856 | 1.9354 | 2202 | 8576 |
| 0.173 | 0.0197 | 0.17828 | 1.93555 | 2202 | 8576 |
| 0.198 | 0.0197 | 0.17796 | 1.93572 | 2202 | 8576 |
| 0.222 | 0.0197 | 0.1776 | 1.93591 | 2202 | 8576 |
| 0.247 | 0.0197 | 0.17718 | 1.93614 | 2202 | 8576 |
| 0.272 | 0.02956 | 0.17669 | 1.93597 | 2201 | 8520 |
| 0.297 | 0.02956 | 0.1761 | 1.93629 | 2201 | 8520 |
| 0.321 | 0.03448 | 0.17539 | 1.93625 | 2200 | 8480 |
| 0.346 | 0.02463 | 0.17452 | 1.93639 | 2199 | 8479 |
| 0.371 | 0.02463 | 0.17342 | 1.937 | 2199 | 8479 |
| 0.395 | 0.02463 | 0.17199 | 1.93778 | 2199 | 8479 |
| 0.42 | 0.02463 | 0.17005 | 1.93886 | 2199 | 8479 |
| 0.445 | 0.02463 | 0.1673 | 1.93967 | 2197 | 8452 |
| 0.47 | 0.02463 | 0.16309 | 1.94204 | 2196 | 8441 |
| 0.494 | 0.0197 | 0.15595 | 1.94559 | 2190 | 8399 |
| 0.519 | 0.0197 | 0.1415 | 1.95439 | 2185 | 8394 |
| 0.544 | 0.0197 | 0.1018 | 2.78989 | 542 | 7302 |
| 0.568 | 0.01478 | 0.09906 | 2.79247 | 523 | 7233 |
| 0.593 | 0.00985 | 0.0942 | 2.86054 | 478 | 6849 |
| 0.618 | 0.00985 | 0.08711 | 2.92008 | 396 | 5020 |
| 0.643 | 0.0197 | 0.07615 | 3.11461 | 240 | 2016 |
| 0.667 | 0.0197 | 0.07065 | 3.40293 | 130 | 1103 |
| 0.692 | 0.01478 | 0.07121 | 3.42068 | 56 | 263 |
| Best Delta | Root Error Rate | Performance | Redundancy | #Nodes | #Genes | |
|---|---|---|---|---|---|---|
| 0 | 0 | 0.0246 | 0.1797 | 1.9351 | 2203 | 8612 |
| 0.1 | 0.519 | 0.0197 | 0.1415 | 1.9544 | 2185 | 8394 |
| 0.2 | 0.519 | 0.0197 | 0.1415 | 1.9544 | 2185 | 8394 |
| 0.3 | 0.519 | 0.0197 | 0.1415 | 1.9544 | 2185 | 8394 |
| 0.4 | 0.519 | 0.0197 | 0.1415 | 1.9544 | 2185 | 8394 |
| 0.5 | 0.519 | 0.0197 | 0.1415 | 1.9544 | 2185 | 8394 |
| 0.6 | 0.6425 | 0.0197 | 0.0762 | 3.1146 | 240 | 2016 |
| 0.7 | 0.6425 | 0.0197 | 0.0762 | 3.1146 | 240 | 2016 |
| 0.8 | 0.6673 | 0.0197 | 0.0707 | 3.4029 | 130 | 1103 |
| 0.9 | 0.6673 | 0.0197 | 0.0707 | 3.4029 | 130 | 1103 |
| 1 | 0.6673 | 0.0197 | 0.0707 | 3.4029 | 130 | 1103 |
| Number of classes: | 2 |
|---|---|
| Class weights: | 'NORMAL': 0.01 'other': 0.99 |
| Class prior: | 'NORMAL':0.084 'other':0.916 |
| Chosen shrinkage level: | 0.667 (by accepting the system default (after consulting weighting alternatives) ) |
| Number of nodes left | 130 |
| Number of accessible genes | 1103 |
Hover over a node to see its description, click on it to view its detailed results.
| Number of samples: | 203 (17 from NORMAL, 186 from other) |
|---|---|
| Classes: | NORMAL, other |
Hover over a node description to see its ID, click on it to see detailed results.
GO:0008150 | biological_process | Biological Process |
| GO:0003673 | Gene_Ontology (not in fit) |
|---|
| ID | Term | Weight |
|---|---|---|
| GO:0007610 | behavior | 0.00000 |
| GO:0000004 | biological_process unknown | 0.00000 |
| GO:0009987 | cellular process | 0.26515 |
| GO:0007275 | development | 0.21091 |
| GO:0008371 | obsolete biological process | 0.00000 |
| GO:0007582 | physiological process | 0.34107 |
| GO:0050789 | regulation of biological process | 0.18287 |
| GO:0016032 | viral life cycle | 0.00000 |
| Sensitivity | Specificity | |
|---|---|---|
| NORMAL | 0.82353 | 0.99462 |
| other | 0.99462 | 0.82353 |
| Sensitivity | Specificity | |
|---|---|---|
| NORMAL | 0.82353 | 0.99462 |
| other | 0.99462 | 0.82353 |
| Class | NORMAL | other | Predictionn | |
|---|---|---|---|---|
| CL2001031606AA (testset) | other | 0.00394 | 0.99606 | other |
| CL2001031607AA (testset) | other | 0.01808 | 0.98192 | other |
| CL2001031608AA (testset) | other | 0.0193 | 0.9807 | other |
| CL2001031609AA (testset) | other | 0.01549 | 0.98451 | other |
| CL2001031611AA (testset) | other | 0.01218 | 0.98782 | other |
| CL2001031612AA (testset) | other | 0.01994 | 0.98006 | other |
| CL2001031613AA (testset) | other | 0.1092 | 0.8908 | other |
| CL2001031615AA (testset) | other | 0.00638 | 0.99362 | other |
| CL2001031616AA (testset) | other | 0.01 | 0.99 | other |
| CL2001031618AA (testset) | other | 0.01266 | 0.98734 | other |
| CL2001031620AA (testset) | other | 0.00585 | 0.99415 | other |
| CL2001031621AA (testset) | other | 0.00811 | 0.99189 | other |
| CL2001031622AA (testset) | other | 0.00561 | 0.99439 | other |
| CL2001031625AA (testset) | other | 0.03324 | 0.96676 | other |
| CL2001031627AA (testset) | other | 0.0142 | 0.9858 | other |
| CL2001031628AA (testset) | other | 0.01592 | 0.98408 | other |
| CL2001031629AA (testset) | other | 0.00842 | 0.99158 | other |
| CL2001031630AA (testset) | other | 0.00671 | 0.99329 | other |
| CL2001031631AA (testset) | other | 0.00654 | 0.99346 | other |
| CL2001031632AA (testset) | other | 0.00383 | 0.99617 | other |
| CL2001031634AA (testset) | other | 0.11602 | 0.88398 | other |
| CL2001031635AA (testset) | other | 0.02133 | 0.97867 | other |
| CL2001031636AA (testset) | other | 0.00917 | 0.99083 | other |
| CL2001032002AA (testset) | other | 0.02654 | 0.97346 | other |
| CL2001032005AA (testset) | other | 0.009 | 0.991 | other |
| CL2001032008AA (testset) | other | 0.00595 | 0.99405 | other |
| CL2001032009AA (testset) | other | 0.00806 | 0.99194 | other |
| CL2001032010AA (testset) | NORMAL | 0.58764 | 0.41236 | NORMAL |
| CL2001032011AA (testset) | other | 0.082 | 0.918 | other |
| CL2001032012AA (testset) | other | 0.01986 | 0.98014 | other |
| CL2001032013AA (testset) | other | 0.02212 | 0.97788 | other |
| CL2001032015AA (testset) | other | 0.16274 | 0.83726 | other |
| CL2001032016AA (testset) | other | 0.01616 | 0.98384 | other |
| CL2001032019AA (testset) | other | 0.01455 | 0.98545 | other |
| CL2001032020AA (testset) | other | 0.01822 | 0.98178 | other |
| CL2001032025AA (testset) | other | 0.01832 | 0.98168 | other |
| CL2001032026AA (testset) | other | 0.01346 | 0.98654 | other |
| CL2001032027AA (testset) | other | 0.02383 | 0.97617 | other |
| CL2001032030AA (testset) | other | 0.00928 | 0.99072 | other |
| CL2001032031AA (testset) | other | 0.02707 | 0.97293 | other |
| CL2001032032AA (testset) | other | 0.01901 | 0.98099 | other |
| CL2001032034AA (testset) | other | 0.14603 | 0.85397 | other |
| CL2001032036AA (testset) | other | 0.03638 | 0.96362 | other |
| CL2001032041AA (testset) | NORMAL | 0.5893 | 0.4107 | NORMAL |
| CL2001032043AA (testset) | NORMAL | 0.88468 | 0.11532 | NORMAL |
| CL2001032044AA (testset) | other | 0.01959 | 0.98041 | other |
| CL2001032045AA (testset) | NORMAL | 0.60631 | 0.39369 | NORMAL |
| CL2001032046AA (testset) | NORMAL | 0.70573 | 0.29427 | NORMAL |
| CL2001032101AA (testset) | other | 0.13715 | 0.86285 | other |
| CL2001032102AA (testset) | NORMAL | 0.73657 | 0.26343 | NORMAL |
| CL2001032103AA (testset) | other | 0.03231 | 0.96769 | other |
| CL2001032104AA (testset) | other | 0.01047 | 0.98953 | other |
| CL2001032105AA (testset) | other | 0.00419 | 0.99581 | other |
| CL2001032107AA (testset) | other | 0.00608 | 0.99392 | other |
| CL2001032108AA (testset) | other | 0.01234 | 0.98766 | other |
| CL2001032109AA (testset) | other | 0.04665 | 0.95335 | other |
| CL2001032110AA (testset) | other | 0.03062 | 0.96938 | other |
| CL2001032111AA (testset) | other | 0.01573 | 0.98427 | other |
| CL2001032113AA (testset) | other | 0.0018 | 0.9982 | other |
| CL2001032114AA (testset) | other | 0.01415 | 0.98585 | other |
| CL2001032115AA (testset) | other | 0.01623 | 0.98377 | other |
| CL2001032116AA (testset) | other | 0.01531 | 0.98469 | other |
| CL2001032117AA (testset) | other | 0.00676 | 0.99324 | other |
| CL2001032121AA (testset) | other | 0.01165 | 0.98835 | other |
| CL2001032122AA (testset) | other | 0.00827 | 0.99173 | other |
| CL2001032124AA (testset) | other | 0.01698 | 0.98302 | other |
| CL2001032125AA (testset) | other | 0.00267 | 0.99733 | other |
| CL2001032127AA (testset) | other | 0.00508 | 0.99492 | other |
| CL2001032128AA (testset) | NORMAL | 0.66228 | 0.33772 | NORMAL |
| CL2001032129AA (testset) | other | 0.0072 | 0.9928 | other |
| CL2001032130AA (testset) | other | 0.00876 | 0.99124 | other |
| CL2001032132AA (testset) | other | 0.0342 | 0.9658 | other |
| CL2001032134AA (testset) | other | 0.02303 | 0.97697 | other |
| CL2001032135AA (testset) | other | 0.03581 | 0.96419 | other |
| CL2001032136AA (testset) | other | 0.01504 | 0.98496 | other |
| CL2001032138AA (testset) | other | 0.0288 | 0.9712 | other |
| CL2001032141AA (testset) | other | 0.01193 | 0.98807 | other |
| CL2001032142AA (testset) | other | 0.0112 | 0.9888 | other |
| CL2001032144AA (testset) | other | 0.00725 | 0.99275 | other |
| CL2001032145AA (testset) | other | 0.00493 | 0.99507 | other |
| CL2001032147AA (testset) | NORMAL | 0.84502 | 0.15498 | NORMAL |
| CL2001032149AA (testset) | other | 0.03654 | 0.96346 | other |
| CL2001032151AA (testset) | other | 0.00451 | 0.99549 | other |
| CL2001032152AA (testset) | other | 0.00539 | 0.99461 | other |
| CL2001032153AA (testset) | other | 0.04524 | 0.95476 | other |
| CL2001032155AA (testset) | other | 0.18014 | 0.81986 | other |
| CL2001032156AA (testset) | other | 0.04613 | 0.95387 | other |
| CL2001032202AA (testset) | NORMAL | 0.88932 | 0.11068 | NORMAL |
| CL2001032206AA (testset) | NORMAL | 0.53743 | 0.46257 | NORMAL |
| CL2001032207AA (testset) | other | 0.01105 | 0.98895 | other |
| CL2001032209AA (testset) | other | 0.00537 | 0.99463 | other |
| CL2001032210AA (testset) | other | 0.03035 | 0.96965 | other |
| CL2001032211AA (testset) | other | 0.00469 | 0.99531 | other |
| CL2001032212AA (testset) | other | 0.00548 | 0.99452 | other |
| CL2001032213AA (testset) | other | 0.0466 | 0.9534 | other |
| CL2001032214AA (testset) | other | 0.05909 | 0.94091 | other |
| CL2001032217AA (testset) | other | 0.00357 | 0.99643 | other |
| CL2001032218AA (testset) | other | 0.00821 | 0.99179 | other |
| CL2001032219AA (testset) | other | 0.01574 | 0.98426 | other |
| CL2001032220AA (testset) | NORMAL | 0.71346 | 0.28654 | NORMAL |
| CL2001032222AA (testset) | other | 0.00417 | 0.99583 | other |
| CL2001032229AA (testset) | other | 0.00795 | 0.99205 | other |
| CL2001032231AA (testset) | other | 0.02666 | 0.97334 | other |
| CL2001032232AA (testset) | other | 0.0123 | 0.9877 | other |
| CL2001032233AA (testset) | other | 0.00516 | 0.99484 | other |
| CL2001032238AA (testset) | other | 0.00578 | 0.99422 | other |
| CL2001032239AA (testset) | other | 0.01613 | 0.98387 | other |
| CL2001032240AA (testset) | other | 0.01172 | 0.98828 | other |
| CL2001032241AA (testset) | other | 0.03417 | 0.96583 | other |
| CL2001032242AA (testset) | other | 0.00943 | 0.99057 | other |
| CL2001032243AA (testset) | other | 0.01348 | 0.98652 | other |
| CL2001032248AA (testset) | other | 0.00485 | 0.99515 | other |
| CL2001032249AA (testset) | other | 0.01865 | 0.98135 | other |
| CL2001032252AA (testset) | other | 0.03882 | 0.96118 | other |
| CL2001032254AA (testset) | other | 0.01583 | 0.98417 | other |
| CL2001032255AA (testset) | other | 0.01354 | 0.98646 | other |
| CL2001032256AA (testset) | NORMAL | 0.32204 | 0.67796 | other |
| CL2001032259AA (testset) | other | 0.02612 | 0.97388 | other |
| CL2001032260AA (testset) | other | 0.14311 | 0.85689 | other |
| CL2001032301AA (testset) | other | 0.01217 | 0.98783 | other |
| CL2001032304AA (testset) | NORMAL | 0.40976 | 0.59024 | other |
| CL2001032305AA (testset) | other | 0.006 | 0.994 | other |
| CL2001032306AA (testset) | other | 0.01304 | 0.98696 | other |
| CL2001032307AA (testset) | other | 0.09208 | 0.90792 | other |
| CL2001032308AA (testset) | other | 0.00995 | 0.99005 | other |
| CL2001032309AA (testset) | other | 0.00758 | 0.99242 | other |
| CL2001032310AA (testset) | other | 0.00555 | 0.99445 | other |
| CL2001032311AA (testset) | other | 0.00983 | 0.99017 | other |
| CL2001032312AA (testset) | other | 0.02232 | 0.97768 | other |
| CL2001032313AA (testset) | other | 0.02199 | 0.97801 | other |
| CL2001032314AA (testset) | other | 0.0038 | 0.9962 | other |
| CL2001032316AA (testset) | other | 0.01116 | 0.98884 | other |
| CL2001032601AA (testset) | other | 0.00712 | 0.99288 | other |
| CL2001032602AA (testset) | other | 0.00702 | 0.99298 | other |
| CL2001032604AA (testset) | other | 0.00506 | 0.99494 | other |
| CL2001032607AA (testset) | other | 0.0051 | 0.9949 | other |
| CL2001032608AA (testset) | other | 0.02598 | 0.97402 | other |
| CL2001032610AA (testset) | other | 0.00379 | 0.99621 | other |
| CL2001032612AA (testset) | other | 0.01725 | 0.98275 | other |
| CL2001032613AA (testset) | other | 0.00651 | 0.99349 | other |
| CL2001032614AA (testset) | other | 0.00645 | 0.99355 | other |
| CL2001032616AA (testset) | other | 0.01285 | 0.98715 | other |
| CL2001032617AA (testset) | other | 0.01347 | 0.98653 | other |
| CL2001032620AA (testset) | other | 0.01661 | 0.98339 | other |
| CL2001032625AA (testset) | other | 0.00506 | 0.99494 | other |
| CL2001032627AA (testset) | other | 0.00494 | 0.99506 | other |
| CL2001032628AA (testset) | other | 0.01132 | 0.98868 | other |
| CL2001032629AA (testset) | other | 0.00334 | 0.99666 | other |
| CL2001032630AA (testset) | other | 0.03289 | 0.96711 | other |
| CL2001032632AA (testset) | other | 0.00366 | 0.99634 | other |
| CL2001032638AA (testset) | other | 0.01659 | 0.98341 | other |
| CL2001032640AA (testset) | other | 0.01598 | 0.98402 | other |
| CL2001032643AA (testset) | other | 0.00956 | 0.99044 | other |
| CL2001032644AA (testset) | other | 0.01206 | 0.98794 | other |
| CL2001032647AA (testset) | other | 0.0337 | 0.9663 | other |
| CL2001032701AA (testset) | other | 0.00686 | 0.99314 | other |
| CL2001032702AA (testset) | other | 0.03658 | 0.96342 | other |
| CL2001032703AA (testset) | other | 0.01368 | 0.98632 | other |
| CL2001032704AA (testset) | other | 0.017 | 0.983 | other |
| CL2001032706AA (testset) | other | 0.01077 | 0.98923 | other |
| CL2001032709AA (testset) | other | 0.01621 | 0.98379 | other |
| CL2001032716AA (testset) | other | 0.02322 | 0.97678 | other |
| CL2001032717AA (testset) | other | 0.0096 | 0.9904 | other |
| CL2001032718AA (testset) | NORMAL | 0.89341 | 0.10659 | NORMAL |
| CL2001032719AA (testset) | other | 0.01881 | 0.98119 | other |
| CL2001032720AA (testset) | other | 0.01312 | 0.98688 | other |
| CL2001032722AA (testset) | other | 0.01687 | 0.98313 | other |
| CL2001032724AA (testset) | NORMAL | 0.18172 | 0.81828 | other |
| CL2001032725AA (testset) | NORMAL | 0.73234 | 0.26766 | NORMAL |
| CL2001032727AA (testset) | NORMAL | 0.78486 | 0.21514 | NORMAL |
| CL2001032729AA (testset) | other | 0.00859 | 0.99141 | other |
| CL2001032730AA (testset) | other | 0.00484 | 0.99516 | other |
| CL2001032732AA (testset) | other | 0.00609 | 0.99391 | other |
| CL2001032733AA (testset) | other | 0.00559 | 0.99441 | other |
| CL2001032738AA (testset) | other | 0.00606 | 0.99394 | other |
| CL2001032742AA (testset) | other | 0.00547 | 0.99453 | other |
| CL2001032746AA (testset) | other | 0.01033 | 0.98967 | other |
| CL2001032747AA (testset) | other | 0.01707 | 0.98293 | other |
| CL2001032833AA (testset) | other | 0.01086 | 0.98914 | other |
| CL2001032836AA (testset) | other | 0.0039 | 0.9961 | other |
| CL2001032838AA (testset) | other | 0.0192 | 0.9808 | other |
| CL2001032839AA (testset) | other | 0.0243 | 0.9757 | other |
| CL2001032841AA (testset) | other | 0.01905 | 0.98095 | other |
| CL2001032842AA (testset) | other | 0.00629 | 0.99371 | other |
| CL2001032843AA (testset) | other | 0.01637 | 0.98363 | other |
| CL2001032845AA (testset) | other | 0.02612 | 0.97388 | other |
| CL2001032846AA (testset) | other | 0.00932 | 0.99068 | other |
| CL2001032847AA (testset) | other | 0.09785 | 0.90215 | other |
| CL2001032848AA (testset) | other | 0.57879 | 0.42121 | NORMAL |
| CL2001032850AA (testset) | other | 0.01106 | 0.98894 | other |
| CL2001032853AA (testset) | other | 0.01305 | 0.98695 | other |
| CL2001032854AA (testset) | other | 0.00839 | 0.99161 | other |
| CL2001032856AA (testset) | other | 0.01802 | 0.98198 | other |
| CL2001032857AA (testset) | other | 0.01023 | 0.98977 | other |
| CL2001032860AA (testset) | other | 0.01261 | 0.98739 | other |
| CL2001040305AA (testset) | other | 0.0036 | 0.9964 | other |
| CL2001040306AA (testset) | other | 0.0201 | 0.9799 | other |
| CL2001041708AA (testset) | other | 0.01244 | 0.98756 | other |
| CL2001041711AA (testset) | other | 0.01161 | 0.98839 | other |
| CL2001041716AA (testset) | other | 0.03533 | 0.96467 | other |
| CL2001042501AA (testset) | other | 0.01509 | 0.98491 | other |
| CL2001042505AA (testset) | other | 0.00665 | 0.99335 | other |
| CL2001042506AA (testset) | other | 0.04519 | 0.95481 | other |
