GO:0016192

GO:0016192

vesicle-mediated transport (annotated genes)

Biological Process

Parent node

GO:0016192	vesicle-mediated transport

This leaf node contains 34 genes

The following 26 of these are used in classification:

	Symbol	Genename	NORMAL score	other score
35693_at	HPCAL1	hippocalcin-like 1	0.8057	-0.0715
35325_at	RAB14	RAB14, member RAS oncogene family	0.6472	-0.0574
1074_at	RAB1A	RAB1A, member RAS oncogene family	-0.4838	0.0429
38666_at	PSCD1	pleckstrin homology, Sec7 and coiled-coil domains 1(cytohesin 1)	0.4827	-0.0428
36194_at	LRPAP1	low density lipoprotein receptor-related protein associated protein 1	0.4669	-0.0414
33630_s_at	SPTBN2	spectrin, beta, non-erythrocytic 2	-0.4083	0.0362
38803_at	NCALD	neurocalcin delta	0.3264	-0.029
37970_at	MAPK8IP3	mitogen-activated protein kinase 8 interacting protein 3	-0.2988	0.0265
34393_r_at	RAB1A	RAB1A, member RAS oncogene family	-0.2195	0.0195
39490_f_at	ARFGAP3	ADP-ribosylation factor GTPase activating protein 3	-0.1889	0.0168
39272_g_at	RAB4B	RAB4B, member RAS oncogene family	0.1837	-0.0163
41602_at	HPCA	hippocalcin	-0.1784	0.0158
34919_at	PSCD3	pleckstrin homology, Sec7 and coiled-coil domains 3	-0.1747	0.0155
35845_at	SEC24B	SEC24 related gene family, member B (S. cerevisiae)	0.1735	-0.0154
40052_at	ACTR1A	ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	0.134	-0.0119
36689_at	OSBPL1A	oxysterol binding protein-like 1A	0.1233	-0.0109
39905_i_at	ARFGAP3	ADP-ribosylation factor GTPase activating protein 3	-0.1205	0.0107
40851_r_at	SEC23B	Sec23 homolog B (S. cerevisiae)	-0.1152	0.0102
34392_s_at	RAB1A	RAB1A, member RAS oncogene family	-0.1145	0.0102
40452_at	CPNE1	copine I	-0.1137	0.0101
39099_at	SEC23A	Sec23 homolog A (S. cerevisiae)	-0.0901	0.008
41280_r_at	MAPK8IP1	mitogen-activated protein kinase 8 interacting protein 1	-0.0896	0.008
32150_at	GOLGA4	golgi autoantigen, golgin subfamily a, 4	0.083	-0.0074
40210_at	RAB13	RAB13, member RAS oncogene family	0.0754	-0.0067
40170_at	M6PRBP1	mannose-6-phosphate receptor binding protein 1	-0.0277	0.0025
39906_r_at	ARFGAP3	ADP-ribosylation factor GTPase activating protein 3	-0.0203	0.0018

Performance on training data

• Error rate: 0.07407
• Performance: 0.23969
• Redundancy: 3.03886

	Sensitivity	Specificity
NORMAL	0.09091	1
other	1	0.09091

Performance on test data

• Error rate: 0.08824
• Performance: 0.29893
• Redundancy: 2.92019

	Sensitivity	Specificity
NORMAL	0	1
other	1	0

Predictions

	Class	NORMAL	other	Predictionn
CL2001031606AA	other	0.00365	0.99635	other
CL2001031607AA	other	0.0218	0.9782	other
CL2001031608AA	other	0.03395	0.96605	other
CL2001031609AA	other	0.01253	0.98747	other
CL2001031611AA	other	0.02749	0.97251	other
CL2001031612AA	other	0.05088	0.94912	other
CL2001031613AA	other	0.26558	0.73442	other
CL2001031615AA	other	0.00553	0.99447	other
CL2001031616AA (testset)	other	0.03369	0.96631	other
CL2001031618AA	other	0.00678	0.99322	other
CL2001031620AA (testset)	other	0.10908	0.89092	other
CL2001031621AA (testset)	other	0.04371	0.95629	other
CL2001031622AA	other	0.01871	0.98129	other
CL2001031625AA	other	0.03557	0.96443	other
CL2001031627AA (testset)	other	0.01077	0.98923	other
CL2001031628AA (testset)	other	0.03263	0.96737	other
CL2001031629AA	other	0.00853	0.99147	other
CL2001031630AA (testset)	other	0.01045	0.98955	other
CL2001031631AA	other	0.00509	0.99491	other
CL2001031632AA	other	0.02702	0.97298	other
CL2001031634AA	other	0.00717	0.99283	other
CL2001031635AA	other	0.02694	0.97306	other
CL2001031636AA	other	0.02057	0.97943	other
CL2001032002AA	other	0.07974	0.92026	other
CL2001032005AA	other	0.00602	0.99398	other
CL2001032008AA	other	0.02501	0.97499	other
CL2001032009AA (testset)	other	0.0354	0.9646	other
CL2001032010AA (testset)	NORMAL	0.17964	0.82036	other
CL2001032011AA (testset)	other	0.03601	0.96399	other
CL2001032012AA (testset)	other	0.05408	0.94592	other
CL2001032013AA (testset)	other	0.03112	0.96888	other
CL2001032015AA	other	0.07602	0.92398	other
CL2001032016AA (testset)	other	0.02596	0.97404	other
CL2001032019AA	other	0.02345	0.97655	other
CL2001032020AA (testset)	other	0.02584	0.97416	other
CL2001032025AA	other	0.01255	0.98745	other
CL2001032026AA	other	0.0424	0.9576	other
CL2001032027AA	other	0.08512	0.91488	other
CL2001032030AA	other	0.01189	0.98811	other
CL2001032031AA (testset)	other	0.01651	0.98349	other
CL2001032032AA	other	0.01857	0.98143	other
CL2001032034AA	other	0.10719	0.89281	other
CL2001032036AA	other	0.02206	0.97794	other
CL2001032041AA	NORMAL	0.32381	0.67619	other
CL2001032043AA	NORMAL	0.56426	0.43574	NORMAL
CL2001032044AA	other	0.05471	0.94529	other
CL2001032045AA (testset)	NORMAL	0.27393	0.72607	other
CL2001032046AA	NORMAL	0.40033	0.59967	other
CL2001032101AA	other	0.04625	0.95375	other
CL2001032102AA	NORMAL	0.42678	0.57322	other
CL2001032103AA	other	0.02031	0.97969	other
CL2001032104AA	other	0.01287	0.98713	other
CL2001032105AA	other	0.00188	0.99812	other
CL2001032107AA	other	0.02513	0.97487	other
CL2001032108AA	other	0.01104	0.98896	other
CL2001032109AA (testset)	other	0.13029	0.86971	other
CL2001032110AA	other	0.04498	0.95502	other
CL2001032111AA	other	0.02016	0.97984	other
CL2001032113AA (testset)	other	0.02273	0.97727	other
CL2001032114AA	other	0.03905	0.96095	other
CL2001032115AA (testset)	other	0.00523	0.99477	other
CL2001032116AA (testset)	other	0.04247	0.95753	other
CL2001032117AA	other	0.03781	0.96219	other
CL2001032121AA	other	0.00959	0.99041	other
CL2001032122AA	other	0.00408	0.99592	other
CL2001032124AA	other	0.04213	0.95787	other
CL2001032125AA	other	0.00428	0.99572	other
CL2001032127AA (testset)	other	0.10114	0.89886	other
CL2001032128AA (testset)	NORMAL	0.31366	0.68634	other
CL2001032129AA (testset)	other	0.01408	0.98592	other
CL2001032130AA	other	0.0083	0.9917	other
CL2001032132AA	other	0.0266	0.9734	other
CL2001032134AA (testset)	other	0.04349	0.95651	other
CL2001032135AA	other	0.09921	0.90079	other
CL2001032136AA (testset)	other	0.0216	0.9784	other
CL2001032138AA (testset)	other	0.02526	0.97474	other
CL2001032141AA (testset)	other	0.02863	0.97137	other
CL2001032142AA	other	0.009	0.991	other
CL2001032144AA	other	0.01973	0.98027	other
CL2001032145AA	other	0.07844	0.92156	other
CL2001032147AA	NORMAL	0.33545	0.66455	other
CL2001032149AA (testset)	other	0.08197	0.91803	other
CL2001032151AA	other	0.01641	0.98359	other
CL2001032152AA	other	0.05299	0.94701	other
CL2001032153AA	other	0.01154	0.98846	other
CL2001032155AA	other	0.49781	0.50219	other
CL2001032156AA (testset)	other	0.06391	0.93609	other
CL2001032202AA (testset)	NORMAL	0.45685	0.54315	other
CL2001032206AA	NORMAL	0.2601	0.7399	other
CL2001032207AA	other	0.00445	0.99555	other
CL2001032209AA	other	0.02001	0.97999	other
CL2001032210AA	other	0.04859	0.95141	other
CL2001032211AA (testset)	other	0.015	0.985	other
CL2001032212AA	other	0.00781	0.99219	other
CL2001032213AA	other	0.02449	0.97551	other
CL2001032214AA (testset)	other	0.03912	0.96088	other
CL2001032217AA (testset)	other	0.01035	0.98965	other
CL2001032218AA	other	0.00427	0.99573	other
CL2001032219AA (testset)	other	0.04917	0.95083	other
CL2001032220AA	NORMAL	0.44709	0.55291	other
CL2001032222AA (testset)	other	0.01106	0.98894	other
CL2001032229AA (testset)	other	0.0143	0.9857	other
CL2001032231AA	other	0.03524	0.96476	other
CL2001032232AA	other	0.08345	0.91655	other
CL2001032233AA (testset)	other	0.04927	0.95073	other
CL2001032238AA	other	0.01705	0.98295	other
CL2001032239AA	other	0.04536	0.95464	other
CL2001032240AA	other	0.04581	0.95419	other
CL2001032241AA (testset)	other	0.04196	0.95804	other
CL2001032242AA	other	0.21611	0.78389	other
CL2001032243AA	other	0.02403	0.97597	other
CL2001032248AA	other	0.0143	0.9857	other
CL2001032249AA (testset)	other	0.02951	0.97049	other
CL2001032252AA (testset)	other	0.00968	0.99032	other
CL2001032254AA (testset)	other	0.0091	0.9909	other
CL2001032255AA	other	0.03	0.97	other
CL2001032256AA (testset)	NORMAL	0.05952	0.94048	other
CL2001032259AA (testset)	other	0.04292	0.95708	other
CL2001032260AA	other	0.01122	0.98878	other
CL2001032301AA	other	0.02347	0.97653	other
CL2001032304AA	NORMAL	0.46761	0.53239	other
CL2001032305AA (testset)	other	0.03753	0.96247	other
CL2001032306AA (testset)	other	0.0099	0.9901	other
CL2001032307AA (testset)	other	0.06486	0.93514	other
CL2001032308AA	other	0.003	0.997	other
CL2001032309AA	other	0.01539	0.98461	other
CL2001032310AA	other	0.00813	0.99187	other
CL2001032311AA (testset)	other	0.02067	0.97933	other
CL2001032312AA	other	0.01093	0.98907	other
CL2001032313AA (testset)	other	0.00564	0.99436	other
CL2001032314AA (testset)	other	0.00755	0.99245	other
CL2001032316AA	other	0.00735	0.99265	other
CL2001032601AA	other	0.01483	0.98517	other
CL2001032602AA	other	0.01507	0.98493	other
CL2001032604AA	other	0.01455	0.98545	other
CL2001032607AA	other	0.00424	0.99576	other
CL2001032608AA	other	0.01604	0.98396	other
CL2001032610AA	other	0.01553	0.98447	other
CL2001032612AA	other	0.0083	0.9917	other
CL2001032613AA (testset)	other	0.00616	0.99384	other
CL2001032614AA	other	0.00385	0.99615	other
CL2001032616AA	other	0.01405	0.98595	other
CL2001032617AA (testset)	other	0.00251	0.99749	other
CL2001032620AA (testset)	other	0.02109	0.97891	other
CL2001032625AA	other	0.00756	0.99244	other
CL2001032627AA	other	0.01134	0.98866	other
CL2001032628AA	other	0.01246	0.98754	other
CL2001032629AA	other	0.00778	0.99222	other
CL2001032630AA (testset)	other	0.04146	0.95854	other
CL2001032632AA	other	0.00902	0.99098	other
CL2001032638AA	other	0.04188	0.95812	other
CL2001032640AA (testset)	other	0.14511	0.85489	other
CL2001032643AA	other	0.01888	0.98112	other
CL2001032644AA (testset)	other	0.01884	0.98116	other
CL2001032647AA	other	0.03156	0.96844	other
CL2001032701AA	other	0.04643	0.95357	other
CL2001032702AA	other	0.02303	0.97697	other
CL2001032703AA	other	0.02627	0.97373	other
CL2001032704AA	other	0.02545	0.97455	other
CL2001032706AA (testset)	other	0.0267	0.9733	other
CL2001032709AA	other	0.02428	0.97572	other
CL2001032716AA	other	0.05803	0.94197	other
CL2001032717AA	other	0.00787	0.99213	other
CL2001032718AA (testset)	NORMAL	0.38728	0.61272	other
CL2001032719AA	other	0.03562	0.96438	other
CL2001032720AA	other	0.00252	0.99748	other
CL2001032722AA	other	0.01494	0.98506	other
CL2001032724AA	NORMAL	0.17377	0.82623	other
CL2001032725AA	NORMAL	0.48837	0.51163	other
CL2001032727AA	NORMAL	0.18614	0.81386	other
CL2001032729AA	other	0.01811	0.98189	other
CL2001032730AA (testset)	other	0.00711	0.99289	other
CL2001032732AA (testset)	other	0.0075	0.9925	other
CL2001032733AA	other	0.00877	0.99123	other
CL2001032738AA (testset)	other	0.01355	0.98645	other
CL2001032742AA (testset)	other	0.00323	0.99677	other
CL2001032746AA	other	0.02759	0.97241	other
CL2001032747AA	other	0.02323	0.97677	other
CL2001032833AA	other	0.04208	0.95792	other
CL2001032836AA (testset)	other	0.02594	0.97406	other
CL2001032838AA (testset)	other	0.0268	0.9732	other
CL2001032839AA	other	0.01817	0.98183	other
CL2001032841AA	other	0.01201	0.98799	other
CL2001032842AA	other	0.01406	0.98594	other
CL2001032843AA (testset)	other	0.00788	0.99212	other
CL2001032845AA (testset)	other	0.02957	0.97043	other
CL2001032846AA	other	0.01852	0.98148	other
CL2001032847AA	other	0.05143	0.94857	other
CL2001032848AA	other	0.21675	0.78325	other
CL2001032850AA	other	0.03162	0.96838	other
CL2001032853AA	other	0.02282	0.97718	other
CL2001032854AA (testset)	other	0.03499	0.96501	other
CL2001032856AA	other	0.00907	0.99093	other
CL2001032857AA	other	0.08058	0.91942	other
CL2001032860AA (testset)	other	0.01558	0.98442	other
CL2001040305AA	other	0.00317	0.99683	other
CL2001040306AA	other	0.015	0.985	other
CL2001041708AA	other	0.00992	0.99008	other
CL2001041711AA	other	0.01594	0.98406	other
CL2001041716AA	other	0.05923	0.94077	other
CL2001042501AA (testset)	other	0.01736	0.98264	other
CL2001042505AA	other	0.01071	0.98929	other
CL2001042506AA (testset)	other	0.0629	0.9371	other