GO:0009653

GO:0009653

morphogenesis (annotated genes)

Biological Process

Parent node

GO:0009653	morphogenesis

This leaf node contains 99 genes

The following 99 of these are used in classification:

	Symbol	Genename	NORMAL score	other score
39350_at	GPC3	glypican 3	1.9699	-0.1747
38772_at	CYR61	cysteine-rich, angiogenic inducer, 61	0.8435	-0.0748
40454_at	FAT	FAT tumor suppressor homolog 1 (Drosophila)	-0.7917	0.0702
34335_at	EFNB2	ephrin-B2	0.7085	-0.0629
33558_at	TBX5	T-box 5	0.7028	-0.0623
37920_at	PITX1	paired-like homeodomain transcription factor 1	-0.6859	0.0608
38181_at	MMP11	matrix metalloproteinase 11 (stromelysin 3)	-0.6354	0.0564
33128_s_at	CST6	cystatin E/M	0.6161	-0.0547
36708_at	CPM	carboxypeptidase M	0.5871	-0.0521
380_at	TBX5	T-box 5	0.5275	-0.0468
31669_s_at	HOXA11	homeo box A11	-0.4755	0.0422
40403_at	MYOC	myocilin, trabecular meshwork inducible glucocorticoid response	0.4718	-0.0419
864_at	HLXB9	homeo box HB9	-0.4658	0.0413
897_at	PKD1	polycystic kidney disease 1 (autosomal dominant)	0.4567	-0.0405
205_g_at	HOXA4	homeo box A4	0.4133	-0.0367
34296_at	MID1	midline 1 (Opitz/BBB syndrome)	0.4107	-0.0364
40328_at	TWIST1	twist homolog 1 (acrocephalosyndactyly 3; Saethre-Chotzen syndrome) (Drosophila)	-0.3939	0.0349
40864_at	RAC1	ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)	0.3775	-0.0335
31851_at	RFP2	ret finger protein 2	0.3757	-0.0333
38918_at	SOX13	SRY (sex determining region Y)-box 13	0.3522	-0.0312
204_at	HOXA4	homeo box A4	0.3503	-0.0311
34891_at	DNCL1	dynein, cytoplasmic, light polypeptide 1	0.3424	-0.0304
34334_at	EFNB2	ephrin-B2	0.3316	-0.0294
1902_at	ERCC1	excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)	-0.3202	0.0284
1526_i_at	FGF8	fibroblast growth factor 8 (androgen-induced)	-0.2959	0.0262
836_at	PTCH	patched homolog (Drosophila)	0.2949	-0.0262
41027_at	FOXC1	forkhead box C1	-0.2886	0.0256
32300_s_at	TH	tyrosine hydroxylase	-0.2756	0.0245
40445_at	ELF3	E74-like factor 3 (ets domain transcription factor, epithelial-specific )	-0.2725	0.0242
1237_at	IER3	immediate early response 3	-0.2694	0.0239
40393_at	HOXA4	homeo box A4	0.2661	-0.0236
31602_at	TBX6	T-box 6	-0.2634	0.0234
2050_s_at	RAC1	ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)	0.2566	-0.0228
38959_s_at	CASR	calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)	-0.2553	0.0226
34488_i_at	FSCN2	fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)	-0.251	0.0223
121_at	PAX8	paired box gene 8	0.2485	-0.022
38988_at	WHSC1	Wolf-Hirschhorn syndrome candidate 1	-0.2387	0.0212
41586_at	FGF18	fibroblast growth factor 18	0.2369	-0.021
1853_at	WNT1	wingless-type MMTV integration site family, member 1	-0.2275	0.0202
34627_at	KRTHA5	keratin, hair, acidic, 5	0.219	-0.0194
36370_at	FOXE1	forkhead box E1 (thyroid transcription factor 2)	-0.2047	0.0182
32706_at	HIRA	HIR histone cell cycle regulation defective homolog A (S. cerevisiae)	-0.2017	0.0179
32521_at	SFRP1	secreted frizzled-related protein 1	0.2012	-0.0178
163_at	DVL1	dishevelled, dsh homolog 1 (Drosophila)	-0.1997	0.0177
145_s_at	TBX5	T-box 5	0.1936	-0.0172
34251_at	HOXB5	homeo box B5	0.1857	-0.0165
31513_at	LBX1	transcription factor similar to D. melanogaster homeodomain protein lady bird late	-0.1824	0.0162
33330_at	CLTCL1	clathrin, heavy polypeptide-like 1	-0.1782	0.0158
38214_at	PTCH	patched homolog (Drosophila)	-0.1647	0.0146
38012_at	FBN2	fibrillin 2 (congenital contractural arachnodactyly)	-0.1627	0.0144
34489_f_at	FSCN2	fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)	0.1626	-0.0144
36519_at	ERCC1	excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)	-0.1568	0.0139
1525_s_at	FGF8	fibroblast growth factor 8 (androgen-induced)	-0.1542	0.0137
32474_at	PAX7	paired box gene 7	-0.1529	0.0136
36018_at	SOX10	SRY (sex determining region Y)-box 10	-0.1438	0.0128
41700_at	F2R	coagulation factor II (thrombin) receptor	0.1409	-0.0125
34631_at	EYA4	eyes absent homolog 4 (Drosophila)	0.1394	-0.0124
31620_at	TBX10	T-box 10	-0.1381	0.0122
37139_at	ED1	ectodermal dysplasia 1, anhidrotic	0.1375	-0.0122
1878_g_at	ERCC1	excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)	-0.1337	0.0119
38750_at	NOTCH3	Notch homolog 3 (Drosophila)	-0.1247	0.0111
41869_at	PES1	pescadillo homolog 1, containing BRCT domain (zebrafish)	-0.1217	0.0108
39605_at	FOXG1B	forkhead box G1B	-0.1208	0.0107
33565_at	TSHB	thyroid stimulating hormone, beta	0.1205	-0.0107
33248_at	HOXA11	homeo box A11	-0.1204	0.0107
996_at	FGF1	fibroblast growth factor 1 (acidic)	0.1176	-0.0104
33129_at	CST6	cystatin E/M	-0.1124	0.01
41427_at	WNT11	wingless-type MMTV integration site family, member 11	-0.1046	0.0093
31549_at	MAS1	MAS1 oncogene	-0.0968	0.0086
41588_at	FGF18	fibroblast growth factor 18	0.0928	-0.0082
37865_at	EDN3	endothelin 3	-0.0907	0.008
34986_at	EVA1	epithelial V-like antigen 1	-0.0889	0.0079
40358_at	GLI3	GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome)	-0.0841	0.0075
35865_at	NR5A2	nuclear receptor subfamily 5, group A, member 2	-0.0806	0.0072
34490_f_at	FSCN2	fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)	0.0798	-0.0071
39297_at	MAB21L1	mab-21-like 1 (C. elegans)	0.0757	-0.0067
36763_at	WNT7A	wingless-type MMTV integration site family, member 7A	-0.0754	0.0067
33684_at	WNT2B	wingless-type MMTV integration site family, member 2B	0.0722	-0.0064
160040_at	EDN3	endothelin 3	0.0677	-0.006
40511_at	GATA3	GATA binding protein 3	-0.0608	0.0054
31655_at	DNCL1	dynein, cytoplasmic, light polypeptide 1	0.0571	-0.0051
38958_at	CASR	calcium-sensing receptor (hypocalciuric hypercalcemia 1, severe neonatal hyperparathyroidism)	-0.0552	0.0049
36702_at	TBX19	T-box 19	0.0525	-0.0047
38439_at	NFE2L1	nuclear factor (erythroid-derived 2)-like 1	0.0507	-0.0045
1855_at	FGF3	fibroblast growth factor 3 (murine mammary tumor virus integration site (v-int-2) oncogene homolog)	-0.0483	0.0043
797_at	MCAM	melanoma cell adhesion molecule	-0.0443	0.0039
37073_at	EYA1	eyes absent homolog 1 (Drosophila)	0.0393	-0.0035
37140_s_at	ED1	ectodermal dysplasia 1, anhidrotic	0.0389	-0.0035
1887_g_at	WNT7A	wingless-type MMTV integration site family, member 7A	0.0376	-0.0033
2030_at	WNT11	wingless-type MMTV integration site family, member 11	0.0345	-0.0031
1695_at	NEDD8	neural precursor cell expressed, developmentally down-regulated 8	-0.0277	0.0025
34058_at	ZNF141	zinc finger protein 141 (clone pHZ-44)	0.0139	-0.0012
1886_at	WNT7A	wingless-type MMTV integration site family, member 7A	0.0113	-0.001
33770_at	CHUK	conserved helix-loop-helix ubiquitous kinase	-0.0107	0.001
36693_at	EYA3	eyes absent homolog 3 (Drosophila)	0.0087	-8e-04
36869_at	PAX8	paired box gene 8	-0.0073	6e-04
41587_g_at	FGF18	fibroblast growth factor 18	0.0072	-6e-04
36508_at	GPC4	glypican 4	-0.003	3e-04
39808_at	WNT11	wingless-type MMTV integration site family, member 11	-0.0024	2e-04

Performance on training data

• Error rate: 0.02963
• Performance: 0.13865
• Redundancy: 4.02813

	Sensitivity	Specificity
NORMAL	0.90909	0.97581
other	0.97581	0.90909

Performance on test data

• Error rate: 0.02941
• Performance: 0.25887
• Redundancy: 3.9722

	Sensitivity	Specificity
NORMAL	0.83333	0.98387
other	0.98387	0.83333

Predictions

	Class	NORMAL	other	Predictionn
CL2001031606AA	other	0.00227	0.99773	other
CL2001031607AA	other	0.00129	0.99871	other
CL2001031608AA	other	0.01671	0.98329	other
CL2001031609AA	other	0	1	other
CL2001031611AA	other	0.00015	0.99985	other
CL2001031612AA	other	0.0056	0.9944	other
CL2001031613AA	other	0.21177	0.78823	other
CL2001031615AA	other	0	1	other
CL2001031616AA (testset)	other	0.00084	0.99916	other
CL2001031618AA	other	1e-04	0.9999	other
CL2001031620AA (testset)	other	3e-05	0.99997	other
CL2001031621AA (testset)	other	2e-05	0.99998	other
CL2001031622AA	other	4e-05	0.99996	other
CL2001031625AA	other	3e-05	0.99997	other
CL2001031627AA (testset)	other	0.00028	0.99972	other
CL2001031628AA (testset)	other	0.00209	0.99791	other
CL2001031629AA	other	0	1	other
CL2001031630AA (testset)	other	0	1	other
CL2001031631AA	other	3e-05	0.99997	other
CL2001031632AA	other	0.00025	0.99975	other
CL2001031634AA	other	0	1	other
CL2001031635AA	other	1e-05	0.99999	other
CL2001031636AA	other	0	1	other
CL2001032002AA	other	4e-05	0.99996	other
CL2001032005AA	other	0	1	other
CL2001032008AA	other	0	1	other
CL2001032009AA (testset)	other	0	1	other
CL2001032010AA (testset)	NORMAL	0.56886	0.43114	NORMAL
CL2001032011AA (testset)	other	0.00044	0.99956	other
CL2001032012AA (testset)	other	0.00183	0.99817	other
CL2001032013AA (testset)	other	0.0015	0.9985	other
CL2001032015AA	other	0.00126	0.99874	other
CL2001032016AA (testset)	other	0	1	other
CL2001032019AA	other	6e-05	0.99994	other
CL2001032020AA (testset)	other	3e-05	0.99997	other
CL2001032025AA	other	0.00052	0.99948	other
CL2001032026AA	other	0.00027	0.99973	other
CL2001032027AA	other	0.00499	0.99501	other
CL2001032030AA	other	0	1	other
CL2001032031AA (testset)	other	0.03877	0.96123	other
CL2001032032AA	other	8e-04	0.9992	other
CL2001032034AA	other	0.5128	0.4872	NORMAL
CL2001032036AA	other	0.10634	0.89366	other
CL2001032041AA	NORMAL	0.98938	0.01062	NORMAL
CL2001032043AA	NORMAL	0.99991	9e-05	NORMAL
CL2001032044AA	other	0	1	other
CL2001032045AA (testset)	NORMAL	0.95803	0.04197	NORMAL
CL2001032046AA	NORMAL	0.98647	0.01353	NORMAL
CL2001032101AA	other	0	1	other
CL2001032102AA	NORMAL	0.9969	0.0031	NORMAL
CL2001032103AA	other	1e-05	0.99999	other
CL2001032104AA	other	0	1	other
CL2001032105AA	other	0	1	other
CL2001032107AA	other	0	1	other
CL2001032108AA	other	6e-05	0.99994	other
CL2001032109AA (testset)	other	0.00024	0.99976	other
CL2001032110AA	other	0.00088	0.99912	other
CL2001032111AA	other	4e-05	0.99996	other
CL2001032113AA (testset)	other	0	1	other
CL2001032114AA	other	4e-05	0.99996	other
CL2001032115AA (testset)	other	0	1	other
CL2001032116AA (testset)	other	4e-05	0.99996	other
CL2001032117AA	other	0.00155	0.99845	other
CL2001032121AA	other	0.00606	0.99394	other
CL2001032122AA	other	1e-05	0.99999	other
CL2001032124AA	other	0	1	other
CL2001032125AA	other	0	1	other
CL2001032127AA (testset)	other	5e-05	0.99995	other
CL2001032128AA (testset)	NORMAL	0.99967	0.00033	NORMAL
CL2001032129AA (testset)	other	0.12505	0.87495	other
CL2001032130AA	other	3e-05	0.99997	other
CL2001032132AA	other	0.00245	0.99755	other
CL2001032134AA (testset)	other	0.05425	0.94575	other
CL2001032135AA	other	0.21051	0.78949	other
CL2001032136AA (testset)	other	0.00119	0.99881	other
CL2001032138AA (testset)	other	0.00258	0.99742	other
CL2001032141AA (testset)	other	0	1	other
CL2001032142AA	other	0.03985	0.96015	other
CL2001032144AA	other	3e-05	0.99997	other
CL2001032145AA	other	1e-05	0.99999	other
CL2001032147AA	NORMAL	0.99982	0.00018	NORMAL
CL2001032149AA (testset)	other	0.00061	0.99939	other
CL2001032151AA	other	0	1	other
CL2001032152AA	other	3e-05	0.99997	other
CL2001032153AA	other	0.0794	0.9206	other
CL2001032155AA	other	0.52032	0.47968	NORMAL
CL2001032156AA (testset)	other	0.01679	0.98321	other
CL2001032202AA (testset)	NORMAL	0.99604	0.00396	NORMAL
CL2001032206AA	NORMAL	0.99648	0.00352	NORMAL
CL2001032207AA	other	0.00346	0.99654	other
CL2001032209AA	other	0.10696	0.89304	other
CL2001032210AA	other	0	1	other
CL2001032211AA (testset)	other	0.00013	0.99987	other
CL2001032212AA	other	2e-05	0.99998	other
CL2001032213AA	other	0.0037	0.9963	other
CL2001032214AA (testset)	other	0.99598	0.00402	NORMAL
CL2001032217AA (testset)	other	5e-05	0.99995	other
CL2001032218AA	other	0	1	other
CL2001032219AA (testset)	other	0	1	other
CL2001032220AA	NORMAL	0.99358	0.00642	NORMAL
CL2001032222AA (testset)	other	0.00016	0.99984	other
CL2001032229AA (testset)	other	9e-05	0.99991	other
CL2001032231AA	other	3e-05	0.99997	other
CL2001032232AA	other	0.02348	0.97652	other
CL2001032233AA (testset)	other	0	1	other
CL2001032238AA	other	0	1	other
CL2001032239AA	other	0.00173	0.99827	other
CL2001032240AA	other	2e-05	0.99998	other
CL2001032241AA (testset)	other	0.00019	0.99981	other
CL2001032242AA	other	1e-05	0.99999	other
CL2001032243AA	other	0.08009	0.91991	other
CL2001032248AA	other	0	1	other
CL2001032249AA (testset)	other	0.00044	0.99956	other
CL2001032252AA (testset)	other	2e-05	0.99998	other
CL2001032254AA (testset)	other	0	1	other
CL2001032255AA	other	0	1	other
CL2001032256AA (testset)	NORMAL	0.09599	0.90401	other
CL2001032259AA (testset)	other	0	1	other
CL2001032260AA	other	5e-05	0.99995	other
CL2001032301AA	other	0.00194	0.99806	other
CL2001032304AA	NORMAL	0.85772	0.14228	NORMAL
CL2001032305AA (testset)	other	1e-05	0.99999	other
CL2001032306AA (testset)	other	0.00088	0.99912	other
CL2001032307AA (testset)	other	0.19338	0.80662	other
CL2001032308AA	other	1e-05	0.99999	other
CL2001032309AA	other	3e-05	0.99997	other
CL2001032310AA	other	2e-05	0.99998	other
CL2001032311AA (testset)	other	1e-05	0.99999	other
CL2001032312AA	other	0.00019	0.99981	other
CL2001032313AA (testset)	other	7e-05	0.99993	other
CL2001032314AA (testset)	other	0.01784	0.98216	other
CL2001032316AA	other	0.00021	0.99979	other
CL2001032601AA	other	1e-05	0.99999	other
CL2001032602AA	other	4e-05	0.99996	other
CL2001032604AA	other	5e-05	0.99995	other
CL2001032607AA	other	0	1	other
CL2001032608AA	other	0.00072	0.99928	other
CL2001032610AA	other	0.00017	0.99983	other
CL2001032612AA	other	1e-05	0.99999	other
CL2001032613AA (testset)	other	2e-05	0.99998	other
CL2001032614AA	other	1e-05	0.99999	other
CL2001032616AA	other	0.00117	0.99883	other
CL2001032617AA (testset)	other	7e-05	0.99993	other
CL2001032620AA (testset)	other	6e-05	0.99994	other
CL2001032625AA	other	0	1	other
CL2001032627AA	other	0.00017	0.99983	other
CL2001032628AA	other	2e-05	0.99998	other
CL2001032629AA	other	0	1	other
CL2001032630AA (testset)	other	0	1	other
CL2001032632AA	other	9e-05	0.99991	other
CL2001032638AA	other	9e-05	0.99991	other
CL2001032640AA (testset)	other	0	1	other
CL2001032643AA	other	5e-05	0.99995	other
CL2001032644AA (testset)	other	0.00952	0.99048	other
CL2001032647AA	other	0.00761	0.99239	other
CL2001032701AA	other	9e-05	0.99991	other
CL2001032702AA	other	0.00462	0.99538	other
CL2001032703AA	other	4e-05	0.99996	other
CL2001032704AA	other	0.05277	0.94723	other
CL2001032706AA (testset)	other	0.00845	0.99155	other
CL2001032709AA	other	1e-05	0.99999	other
CL2001032716AA	other	0.00207	0.99793	other
CL2001032717AA	other	0	1	other
CL2001032718AA (testset)	NORMAL	0.99999	1e-05	NORMAL
CL2001032719AA	other	0	1	other
CL2001032720AA	other	0	1	other
CL2001032722AA	other	0	1	other
CL2001032724AA	NORMAL	0.13237	0.86763	other
CL2001032725AA	NORMAL	0.99801	0.00199	NORMAL
CL2001032727AA	NORMAL	0.97155	0.02845	NORMAL
CL2001032729AA	other	0.00047	0.99953	other
CL2001032730AA (testset)	other	0	1	other
CL2001032732AA (testset)	other	6e-05	0.99994	other
CL2001032733AA	other	1e-05	0.99999	other
CL2001032738AA (testset)	other	0.00013	0.99987	other
CL2001032742AA (testset)	other	0.00103	0.99897	other
CL2001032746AA	other	0.01626	0.98374	other
CL2001032747AA	other	9e-04	0.9991	other
CL2001032833AA	other	0	1	other
CL2001032836AA (testset)	other	8e-05	0.99992	other
CL2001032838AA (testset)	other	0	1	other
CL2001032839AA	other	2e-05	0.99998	other
CL2001032841AA	other	1e-05	0.99999	other
CL2001032842AA	other	0.00032	0.99968	other
CL2001032843AA (testset)	other	1e-05	0.99999	other
CL2001032845AA (testset)	other	0	1	other
CL2001032846AA	other	4e-05	0.99996	other
CL2001032847AA	other	0	1	other
CL2001032848AA	other	0.9897	0.0103	NORMAL
CL2001032850AA	other	0	1	other
CL2001032853AA	other	0.00493	0.99507	other
CL2001032854AA (testset)	other	1e-05	0.99999	other
CL2001032856AA	other	1e-05	0.99999	other
CL2001032857AA	other	2e-05	0.99998	other
CL2001032860AA (testset)	other	0	1	other
CL2001040305AA	other	0	1	other
CL2001040306AA	other	1e-05	0.99999	other
CL2001041708AA	other	1e-05	0.99999	other
CL2001041711AA	other	1e-05	0.99999	other
CL2001041716AA	other	0.00332	0.99668	other
CL2001042501AA (testset)	other	0	1	other
CL2001042505AA	other	0	1	other
CL2001042506AA (testset)	other	2e-05	0.99998	other