GO:0006979

GO:0006979

response to oxidative stress (annotated genes)

Biological Process

Parent node

GO:0006979	response to oxidative stress

This leaf node contains 29 genes

The following 25 of these are used in classification:

	Symbol	Genename	NORMAL score	other score
37009_at	CAT	catalase	1.295	-0.1149
34363_at	SEPP1	selenoprotein P, plasma, 1	1.1262	-0.0999
36937_s_at	PDLIM1	PDZ and LIM domain 1 (elfin)	1.0692	-0.0949
1005_at	DUSP1	dual specificity phosphatase 1	0.9082	-0.0806
1403_s_at	CCL5	chemokine (C-C motif) ligand 5	0.5372	-0.0477
35194_at	GPX2	glutathione peroxidase 2 (gastrointestinal)	-0.5338	0.0474
39729_at	PRDX2	peroxiredoxin 2	-0.531	0.0471
34715_at	FOXM1	forkhead box M1	-0.3832	0.034
1405_i_at	CCL5	chemokine (C-C motif) ligand 5	0.3272	-0.029
35723_at	NUDT1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	-0.252	0.0224
34666_at	SOD2	superoxide dismutase 2, mitochondrial	-0.1619	0.0144
399_at	STK25	serine/threonine kinase 25 (STE20 homolog, yeast)	-0.1494	0.0133
1404_r_at	CCL5	chemokine (C-C motif) ligand 5	0.1458	-0.0129
41323_at	FOXM1	forkhead box M1	-0.136	0.0121
39136_at	OSR1	oxidative-stress responsive 1	0.1339	-0.0119
36336_s_at	GPX4	glutathione peroxidase 4 (phospholipid hydroperoxidase)	0.1051	-0.0093
34587_at	EPX	eosinophil peroxidase	-0.0799	0.0071
38386_r_at	GSS	glutathione synthetase	-0.0715	0.0063
33284_at	MPO	myeloperoxidase	0.0672	-0.006
33333_at	PIP3-E	phosphoinositide-binding protein PIP3-E	0.0566	-0.005
33931_at	GPX4	glutathione peroxidase 4 (phospholipid hydroperoxidase)	-0.0409	0.0036
41776_at	ATOX1	ATX1 antioxidant protein 1 homolog (yeast)	-0.0347	0.0031
39354_at	PRDX6	peroxiredoxin 6	0.0307	-0.0027
35928_at	TPO	thyroid peroxidase	-0.0251	0.0022
40104_at	STK25	serine/threonine kinase 25 (STE20 homolog, yeast)	-0.001	1e-04

Performance on training data

• Error rate: 0.04444
• Performance: 0.2113
• Redundancy: 3.75449

	Sensitivity	Specificity
NORMAL	0.81818	0.96774
other	0.96774	0.81818

Performance on test data

• Error rate: 0.05882
• Performance: 0.21079
• Redundancy: 3.58615

	Sensitivity	Specificity
NORMAL	0.83333	0.95161
other	0.95161	0.83333

Predictions

	Class	NORMAL	other	Predictionn
CL2001031606AA	other	6e-05	0.99994	other
CL2001031607AA	other	0.01445	0.98555	other
CL2001031608AA	other	0.04796	0.95204	other
CL2001031609AA	other	5e-05	0.99995	other
CL2001031611AA	other	0.00407	0.99593	other
CL2001031612AA	other	0.05853	0.94147	other
CL2001031613AA	other	0.54584	0.45416	NORMAL
CL2001031615AA	other	2e-04	0.9998	other
CL2001031616AA (testset)	other	0.01638	0.98362	other
CL2001031618AA	other	0.0101	0.9899	other
CL2001031620AA (testset)	other	0.01331	0.98669	other
CL2001031621AA (testset)	other	0.00019	0.99981	other
CL2001031622AA	other	0.01249	0.98751	other
CL2001031625AA	other	0.00511	0.99489	other
CL2001031627AA (testset)	other	0.0055	0.9945	other
CL2001031628AA (testset)	other	0.00097	0.99903	other
CL2001031629AA	other	0.00224	0.99776	other
CL2001031630AA (testset)	other	8e-05	0.99992	other
CL2001031631AA	other	0.0055	0.9945	other
CL2001031632AA	other	1e-04	0.9999	other
CL2001031634AA	other	0.00033	0.99967	other
CL2001031635AA	other	0.04575	0.95425	other
CL2001031636AA	other	0.00976	0.99024	other
CL2001032002AA	other	0.00116	0.99884	other
CL2001032005AA	other	0.00022	0.99978	other
CL2001032008AA	other	5e-05	0.99995	other
CL2001032009AA (testset)	other	0.00062	0.99938	other
CL2001032010AA (testset)	NORMAL	0.60071	0.39929	NORMAL
CL2001032011AA (testset)	other	0.22531	0.77469	other
CL2001032012AA (testset)	other	0.10792	0.89208	other
CL2001032013AA (testset)	other	0.01377	0.98623	other
CL2001032015AA	other	0.10863	0.89137	other
CL2001032016AA (testset)	other	0.00122	0.99878	other
CL2001032019AA	other	0.00346	0.99654	other
CL2001032020AA (testset)	other	0.0245	0.9755	other
CL2001032025AA	other	0.00018	0.99982	other
CL2001032026AA	other	0.00439	0.99561	other
CL2001032027AA	other	0.06815	0.93185	other
CL2001032030AA	other	0.00185	0.99815	other
CL2001032031AA (testset)	other	0.2277	0.7723	other
CL2001032032AA	other	0.08865	0.91135	other
CL2001032034AA	other	0.88273	0.11727	NORMAL
CL2001032036AA	other	0.00071	0.99929	other
CL2001032041AA	NORMAL	0.9176	0.0824	NORMAL
CL2001032043AA	NORMAL	0.98195	0.01805	NORMAL
CL2001032044AA	other	2e-05	0.99998	other
CL2001032045AA (testset)	NORMAL	0.81542	0.18458	NORMAL
CL2001032046AA	NORMAL	0.9053	0.0947	NORMAL
CL2001032101AA	other	0.0019	0.9981	other
CL2001032102AA	NORMAL	0.92337	0.07663	NORMAL
CL2001032103AA	other	0.00111	0.99889	other
CL2001032104AA	other	0.00097	0.99903	other
CL2001032105AA	other	0.00032	0.99968	other
CL2001032107AA	other	0.00037	0.99963	other
CL2001032108AA	other	0.01723	0.98277	other
CL2001032109AA (testset)	other	0.67561	0.32439	NORMAL
CL2001032110AA	other	0.04018	0.95982	other
CL2001032111AA	other	0.12714	0.87286	other
CL2001032113AA (testset)	other	1e-05	0.99999	other
CL2001032114AA	other	0.01242	0.98758	other
CL2001032115AA (testset)	other	0.00011	0.99989	other
CL2001032116AA (testset)	other	0.00201	0.99799	other
CL2001032117AA	other	0.01364	0.98636	other
CL2001032121AA	other	6e-05	0.99994	other
CL2001032122AA	other	0.01212	0.98788	other
CL2001032124AA	other	0.00026	0.99974	other
CL2001032125AA	other	3e-05	0.99997	other
CL2001032127AA (testset)	other	6e-05	0.99994	other
CL2001032128AA (testset)	NORMAL	0.96204	0.03796	NORMAL
CL2001032129AA (testset)	other	0.00143	0.99857	other
CL2001032130AA	other	0.014	0.986	other
CL2001032132AA	other	0.00053	0.99947	other
CL2001032134AA (testset)	other	0.1575	0.8425	other
CL2001032135AA	other	0.1389	0.8611	other
CL2001032136AA (testset)	other	0.00531	0.99469	other
CL2001032138AA (testset)	other	0.00906	0.99094	other
CL2001032141AA (testset)	other	0.00146	0.99854	other
CL2001032142AA	other	0.00026	0.99974	other
CL2001032144AA	other	0.0038	0.9962	other
CL2001032145AA	other	0.00022	0.99978	other
CL2001032147AA	NORMAL	0.99752	0.00248	NORMAL
CL2001032149AA (testset)	other	0.3706	0.6294	other
CL2001032151AA	other	0	1	other
CL2001032152AA	other	3e-05	0.99997	other
CL2001032153AA	other	0.00634	0.99366	other
CL2001032155AA	other	0.97703	0.02297	NORMAL
CL2001032156AA (testset)	other	0.05563	0.94437	other
CL2001032202AA (testset)	NORMAL	0.876	0.124	NORMAL
CL2001032206AA	NORMAL	0.94656	0.05344	NORMAL
CL2001032207AA	other	0.00106	0.99894	other
CL2001032209AA	other	0.00282	0.99718	other
CL2001032210AA	other	0.00062	0.99938	other
CL2001032211AA (testset)	other	0.00021	0.99979	other
CL2001032212AA	other	0.0015	0.9985	other
CL2001032213AA	other	0.1697	0.8303	other
CL2001032214AA (testset)	other	0.54592	0.45408	NORMAL
CL2001032217AA (testset)	other	1e-05	0.99999	other
CL2001032218AA	other	0.00266	0.99734	other
CL2001032219AA (testset)	other	2e-05	0.99998	other
CL2001032220AA	NORMAL	0.35828	0.64172	other
CL2001032222AA (testset)	other	0.00033	0.99967	other
CL2001032229AA (testset)	other	0.00078	0.99922	other
CL2001032231AA	other	0.00748	0.99252	other
CL2001032232AA	other	0.00769	0.99231	other
CL2001032233AA (testset)	other	7e-05	0.99993	other
CL2001032238AA	other	0.00011	0.99989	other
CL2001032239AA	other	0.00014	0.99986	other
CL2001032240AA	other	6e-04	0.9994	other
CL2001032241AA (testset)	other	0.14831	0.85169	other
CL2001032242AA	other	8e-04	0.9992	other
CL2001032243AA	other	0.03851	0.96149	other
CL2001032248AA	other	0.00036	0.99964	other
CL2001032249AA (testset)	other	0.00074	0.99926	other
CL2001032252AA (testset)	other	0.00214	0.99786	other
CL2001032254AA (testset)	other	0.00261	0.99739	other
CL2001032255AA	other	0.00018	0.99982	other
CL2001032256AA (testset)	NORMAL	0.48276	0.51724	other
CL2001032259AA (testset)	other	0.02157	0.97843	other
CL2001032260AA	other	0.00404	0.99596	other
CL2001032301AA	other	0.06102	0.93898	other
CL2001032304AA	NORMAL	0.35802	0.64198	other
CL2001032305AA (testset)	other	0.00982	0.99018	other
CL2001032306AA (testset)	other	0.00796	0.99204	other
CL2001032307AA (testset)	other	0.83318	0.16682	NORMAL
CL2001032308AA	other	0.00209	0.99791	other
CL2001032309AA	other	0.05364	0.94636	other
CL2001032310AA	other	0.00041	0.99959	other
CL2001032311AA (testset)	other	0.0013	0.9987	other
CL2001032312AA	other	0.00576	0.99424	other
CL2001032313AA (testset)	other	2e-05	0.99998	other
CL2001032314AA (testset)	other	0.05083	0.94917	other
CL2001032316AA	other	0.00131	0.99869	other
CL2001032601AA	other	0.00314	0.99686	other
CL2001032602AA	other	0.00315	0.99685	other
CL2001032604AA	other	0.00155	0.99845	other
CL2001032607AA	other	1e-05	0.99999	other
CL2001032608AA	other	0.00045	0.99955	other
CL2001032610AA	other	0.00136	0.99864	other
CL2001032612AA	other	0.00254	0.99746	other
CL2001032613AA (testset)	other	0.00106	0.99894	other
CL2001032614AA	other	6e-05	0.99994	other
CL2001032616AA	other	0.00081	0.99919	other
CL2001032617AA (testset)	other	0.00021	0.99979	other
CL2001032620AA (testset)	other	0.00148	0.99852	other
CL2001032625AA	other	0.00023	0.99977	other
CL2001032627AA	other	0.00011	0.99989	other
CL2001032628AA	other	0.0014	0.9986	other
CL2001032629AA	other	0	1	other
CL2001032630AA (testset)	other	0.00089	0.99911	other
CL2001032632AA	other	0.00033	0.99967	other
CL2001032638AA	other	0.00131	0.99869	other
CL2001032640AA (testset)	other	0.00123	0.99877	other
CL2001032643AA	other	0.00257	0.99743	other
CL2001032644AA (testset)	other	0.0018	0.9982	other
CL2001032647AA	other	0.08509	0.91491	other
CL2001032701AA	other	0.00093	0.99907	other
CL2001032702AA	other	0.04243	0.95757	other
CL2001032703AA	other	0.00181	0.99819	other
CL2001032704AA	other	0.00185	0.99815	other
CL2001032706AA (testset)	other	0.10285	0.89715	other
CL2001032709AA	other	0.00017	0.99983	other
CL2001032716AA	other	0.00278	0.99722	other
CL2001032717AA	other	0.00016	0.99984	other
CL2001032718AA (testset)	NORMAL	0.98639	0.01361	NORMAL
CL2001032719AA	other	0.03872	0.96128	other
CL2001032720AA	other	1e-05	0.99999	other
CL2001032722AA	other	0.00063	0.99937	other
CL2001032724AA	NORMAL	0.85228	0.14772	NORMAL
CL2001032725AA	NORMAL	0.64157	0.35843	NORMAL
CL2001032727AA	NORMAL	0.89851	0.10149	NORMAL
CL2001032729AA	other	0.03542	0.96458	other
CL2001032730AA (testset)	other	0.00051	0.99949	other
CL2001032732AA (testset)	other	0.00113	0.99887	other
CL2001032733AA	other	0.01902	0.98098	other
CL2001032738AA (testset)	other	0.00081	0.99919	other
CL2001032742AA (testset)	other	0.00052	0.99948	other
CL2001032746AA	other	0.00174	0.99826	other
CL2001032747AA	other	0.00089	0.99911	other
CL2001032833AA	other	0.00305	0.99695	other
CL2001032836AA (testset)	other	0.00321	0.99679	other
CL2001032838AA (testset)	other	0.00395	0.99605	other
CL2001032839AA	other	0.001	0.999	other
CL2001032841AA	other	0.00172	0.99828	other
CL2001032842AA	other	0.00166	0.99834	other
CL2001032843AA (testset)	other	0.00017	0.99983	other
CL2001032845AA (testset)	other	0.00094	0.99906	other
CL2001032846AA	other	0.00354	0.99646	other
CL2001032847AA	other	0.00363	0.99637	other
CL2001032848AA	other	0.93543	0.06457	NORMAL
CL2001032850AA	other	2e-05	0.99998	other
CL2001032853AA	other	0.00032	0.99968	other
CL2001032854AA (testset)	other	9e-05	0.99991	other
CL2001032856AA	other	0.00213	0.99787	other
CL2001032857AA	other	0.00292	0.99708	other
CL2001032860AA (testset)	other	1e-05	0.99999	other
CL2001040305AA	other	0.0014	0.9986	other
CL2001040306AA	other	5e-04	0.9995	other
CL2001041708AA	other	0.00167	0.99833	other
CL2001041711AA	other	0.00086	0.99914	other
CL2001041716AA	other	0.11535	0.88465	other
CL2001042501AA (testset)	other	0	1	other
CL2001042505AA	other	0.00012	0.99988	other
CL2001042506AA (testset)	other	0.10721	0.89279	other