GO:0006936

GO:0006936

muscle contraction (annotated genes)

Biological Process

Parent node

GO:0006936	muscle contraction

This leaf node contains 59 genes

The following 49 of these are used in classification:

	Symbol	Genename	NORMAL score	other score
33766_at	VIPR1	vasoactive intestinal peptide receptor 1	2.1729	-0.1928
32109_at	FXYD1	FXYD domain containing ion transport regulator 1 (phospholemman)	1.5173	-0.1346
38734_at	PLN	phospholamban	0.6114	-0.0542
32243_g_at	CRYAB	crystallin, alpha B	0.5456	-0.0484
34873_at	NEBL	nebulette	0.5408	-0.048
35335_at	ROCK2	Rho-associated, coiled-coil containing protein kinase 2	0.5004	-0.0444
336_at	TBXA2R	thromboxane A2 receptor	0.4587	-0.0407
32242_at	CRYAB	crystallin, alpha B	0.3878	-0.0344
33642_s_at	SLC6A8	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	-0.3864	0.0343
33302_at	SSPN	sarcospan (Kras oncogene-associated gene)	0.3417	-0.0303
37996_s_at	DMPK	dystrophia myotonica-protein kinase	0.3354	-0.0298
33303_at	SSPN	sarcospan (Kras oncogene-associated gene)	0.323	-0.0286
40488_at	DMD	dystrophin (muscular dystrophy, Duchenne and Becker types)	0.3077	-0.0273
35627_at	SNTA1	syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)	-0.2951	0.0262
41738_at	CALD1	caldesmon 1	0.2814	-0.025
39050_at	PABPN1	poly(A) binding protein, nuclear 1	-0.2666	0.0236
33064_at	CACNG1	calcium channel, voltage-dependent, gamma subunit 1	0.2602	-0.0231
33545_at	SCN4A	sodium channel, voltage-gated, type IV, alpha	-0.2531	0.0225
37997_r_at	DMPK	dystrophia myotonica-protein kinase	-0.2462	0.0218
33567_at	VIP	vasoactive intestinal peptide	0.2273	-0.0202
37602_at	GAMT	guanidinoacetate N-methyltransferase	-0.2238	0.0199
40527_at	KCNQ1	potassium voltage-gated channel, KQT-like subfamily, member 1	0.211	-0.0187
37278_at	TAZ	tafazzin (cardiomyopathy, dilated 3A (X-linked); endocardial fibroelastosis 2; Barth syndrome)	0.1939	-0.0172
38225_at	KCNH2	potassium voltage-gated channel, subfamily H (eag-related), member 2	-0.1839	0.0163
31554_at	CHRND	cholinergic receptor, nicotinic, delta polypeptide	-0.18	0.016
41390_at	UTRN	utrophin (homologous to dystrophin)	0.1631	-0.0145
33133_at	FLII	flightless I homolog (Drosophila)	0.1627	-0.0144
36989_at	DAG1	dystroglycan 1 (dystrophin-associated glycoprotein 1)	0.1597	-0.0142
39834_at	CHRNE	cholinergic receptor, nicotinic, epsilon polypeptide	-0.1289	0.0114
31638_at	GAMT	guanidinoacetate N-methyltransferase	-0.1276	0.0113
35027_at	CHRNB1	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	-0.1235	0.011
39624_at	LTB4R	leukotriene B4 receptor	-0.1198	0.0106
36426_g_at	NEBL	nebulette	-0.1078	0.0096
41731_g_at	MYL3	myosin, light polypeptide 3, alkali; ventricular, skeletal, slow	-0.0956	0.0085
32495_at	CLCN1	chloride channel 1, skeletal muscle (Thomsen disease, autosomal dominant)	-0.0854	0.0076
32077_s_at	KCNQ1	potassium voltage-gated channel, KQT-like subfamily, member 1	-0.083	0.0074
34915_at	SLC8A1	solute carrier family 8 (sodium/calcium exchanger), member 1	0.0755	-0.0067
31737_at	ACTA1	actin, alpha 1, skeletal muscle	-0.0626	0.0056
355_s_at	FKBP1B	FK506 binding protein 1B, 12.6 kDa	0.05	-0.0044
37529_at	CACNA1H	calcium channel, voltage-dependent, alpha 1H subunit	-0.0397	0.0035
35239_at	EMD	emerin (Emery-Dreifuss muscular dystrophy)	0.0386	-0.0034
39063_at	ACTC	actin, alpha, cardiac muscle	0.0326	-0.0029
32920_at	HCN4	hyperpolarization activated cyclic nucleotide-gated potassium channel 4	-0.0311	0.0028
38263_at	RYR2	ryanodine receptor 2 (cardiac)	0.025	-0.0022
31905_at	GALR2	galanin receptor 2	-0.0222	0.002
37592_at	CKMT2	creatine kinase, mitochondrial 2 (sarcomeric)	-0.0211	0.0019
36425_at	NEBL	nebulette	-0.0206	0.0018
38858_at	KCNH2	potassium voltage-gated channel, subfamily H (eag-related), member 2	-0.0085	8e-04
34678_at	FER1L3	fer-1-like 3, myoferlin (C. elegans)	0.0037	-3e-04

Performance on training data

• Error rate: 0.02222
• Performance: 0.14768
• Redundancy: 4.06135

	Sensitivity	Specificity
NORMAL	0.90909	0.98387
other	0.98387	0.90909

Performance on test data

• Error rate: 0.01471
• Performance: 0.10483
• Redundancy: 4.08371

	Sensitivity	Specificity
NORMAL	0.83333	1
other	1	0.83333

Predictions

	Class	NORMAL	other	Predictionn
CL2001031606AA	other	0	1	other
CL2001031607AA	other	0.00071	0.99929	other
CL2001031608AA	other	0.0068	0.9932	other
CL2001031609AA	other	0.17702	0.82298	other
CL2001031611AA	other	0.00021	0.99979	other
CL2001031612AA	other	0.00874	0.99126	other
CL2001031613AA	other	0.0025	0.9975	other
CL2001031615AA	other	0.00014	0.99986	other
CL2001031616AA (testset)	other	3e-04	0.9997	other
CL2001031618AA	other	0.00031	0.99969	other
CL2001031620AA (testset)	other	7e-05	0.99993	other
CL2001031621AA (testset)	other	2e-05	0.99998	other
CL2001031622AA	other	2e-04	0.9998	other
CL2001031625AA	other	0.00023	0.99977	other
CL2001031627AA (testset)	other	0.00027	0.99973	other
CL2001031628AA (testset)	other	0.00204	0.99796	other
CL2001031629AA	other	1e-05	0.99999	other
CL2001031630AA (testset)	other	0	1	other
CL2001031631AA	other	5e-05	0.99995	other
CL2001031632AA	other	3e-05	0.99997	other
CL2001031634AA	other	0.00289	0.99711	other
CL2001031635AA	other	3e-05	0.99997	other
CL2001031636AA	other	3e-05	0.99997	other
CL2001032002AA	other	9e-05	0.99991	other
CL2001032005AA	other	0	1	other
CL2001032008AA	other	0	1	other
CL2001032009AA (testset)	other	0	1	other
CL2001032010AA (testset)	NORMAL	0.82666	0.17334	NORMAL
CL2001032011AA (testset)	other	5e-04	0.9995	other
CL2001032012AA (testset)	other	0.00022	0.99978	other
CL2001032013AA (testset)	other	0.0037	0.9963	other
CL2001032015AA	other	0.89427	0.10573	NORMAL
CL2001032016AA (testset)	other	0.00023	0.99977	other
CL2001032019AA	other	4e-05	0.99996	other
CL2001032020AA (testset)	other	2e-05	0.99998	other
CL2001032025AA	other	0.00013	0.99987	other
CL2001032026AA	other	0.00014	0.99986	other
CL2001032027AA	other	0.00094	0.99906	other
CL2001032030AA	other	7e-05	0.99993	other
CL2001032031AA (testset)	other	0.00095	0.99905	other
CL2001032032AA	other	0.00555	0.99445	other
CL2001032034AA	other	0.14195	0.85805	other
CL2001032036AA	other	0.00115	0.99885	other
CL2001032041AA	NORMAL	0.69579	0.30421	NORMAL
CL2001032043AA	NORMAL	0.99974	0.00026	NORMAL
CL2001032044AA	other	1e-05	0.99999	other
CL2001032045AA (testset)	NORMAL	0.99383	0.00617	NORMAL
CL2001032046AA	NORMAL	0.82179	0.17821	NORMAL
CL2001032101AA	other	9e-05	0.99991	other
CL2001032102AA	NORMAL	0.99989	0.00011	NORMAL
CL2001032103AA	other	5e-05	0.99995	other
CL2001032104AA	other	3e-05	0.99997	other
CL2001032105AA	other	0.00016	0.99984	other
CL2001032107AA	other	2e-05	0.99998	other
CL2001032108AA	other	1e-04	0.9999	other
CL2001032109AA (testset)	other	0.02465	0.97535	other
CL2001032110AA	other	0.003	0.997	other
CL2001032111AA	other	0.00046	0.99954	other
CL2001032113AA (testset)	other	1e-05	0.99999	other
CL2001032114AA	other	0.00058	0.99942	other
CL2001032115AA (testset)	other	6e-05	0.99994	other
CL2001032116AA (testset)	other	0.00011	0.99989	other
CL2001032117AA	other	4e-05	0.99996	other
CL2001032121AA	other	8e-05	0.99992	other
CL2001032122AA	other	4e-05	0.99996	other
CL2001032124AA	other	0.00039	0.99961	other
CL2001032125AA	other	0.00703	0.99297	other
CL2001032127AA (testset)	other	3e-05	0.99997	other
CL2001032128AA (testset)	NORMAL	0.99827	0.00173	NORMAL
CL2001032129AA (testset)	other	0.00312	0.99688	other
CL2001032130AA	other	0.00022	0.99978	other
CL2001032132AA	other	0.00088	0.99912	other
CL2001032134AA (testset)	other	0.01074	0.98926	other
CL2001032135AA	other	0.00115	0.99885	other
CL2001032136AA (testset)	other	0.00089	0.99911	other
CL2001032138AA (testset)	other	0.00018	0.99982	other
CL2001032141AA (testset)	other	8e-05	0.99992	other
CL2001032142AA	other	0.00011	0.99989	other
CL2001032144AA	other	0	1	other
CL2001032145AA	other	0.00099	0.99901	other
CL2001032147AA	NORMAL	0.99907	0.00093	NORMAL
CL2001032149AA (testset)	other	0.00216	0.99784	other
CL2001032151AA	other	0.00791	0.99209	other
CL2001032152AA	other	1e-05	0.99999	other
CL2001032153AA	other	0.0012	0.9988	other
CL2001032155AA	other	0.03433	0.96567	other
CL2001032156AA (testset)	other	0.00227	0.99773	other
CL2001032202AA (testset)	NORMAL	0.99998	2e-05	NORMAL
CL2001032206AA	NORMAL	0.93647	0.06353	NORMAL
CL2001032207AA	other	0.00012	0.99988	other
CL2001032209AA	other	1e-05	0.99999	other
CL2001032210AA	other	0.00031	0.99969	other
CL2001032211AA (testset)	other	1e-05	0.99999	other
CL2001032212AA	other	5e-05	0.99995	other
CL2001032213AA	other	0.03688	0.96312	other
CL2001032214AA (testset)	other	0.02182	0.97818	other
CL2001032217AA (testset)	other	1e-05	0.99999	other
CL2001032218AA	other	1e-04	0.9999	other
CL2001032219AA (testset)	other	0.00021	0.99979	other
CL2001032220AA	NORMAL	0.99902	0.00098	NORMAL
CL2001032222AA (testset)	other	4e-05	0.99996	other
CL2001032229AA (testset)	other	7e-05	0.99993	other
CL2001032231AA	other	0.00302	0.99698	other
CL2001032232AA	other	0.00095	0.99905	other
CL2001032233AA (testset)	other	2e-05	0.99998	other
CL2001032238AA	other	0.00042	0.99958	other
CL2001032239AA	other	1e-05	0.99999	other
CL2001032240AA	other	4e-05	0.99996	other
CL2001032241AA (testset)	other	0.00041	0.99959	other
CL2001032242AA	other	3e-05	0.99997	other
CL2001032243AA	other	0.00027	0.99973	other
CL2001032248AA	other	0	1	other
CL2001032249AA (testset)	other	0.00021	0.99979	other
CL2001032252AA (testset)	other	0.00161	0.99839	other
CL2001032254AA (testset)	other	0.00016	0.99984	other
CL2001032255AA	other	1e-05	0.99999	other
CL2001032256AA (testset)	NORMAL	0.02902	0.97098	other
CL2001032259AA (testset)	other	1e-05	0.99999	other
CL2001032260AA	other	8e-05	0.99992	other
CL2001032301AA	other	0.00148	0.99852	other
CL2001032304AA	NORMAL	0.6356	0.3644	NORMAL
CL2001032305AA (testset)	other	0.00046	0.99954	other
CL2001032306AA (testset)	other	0.00071	0.99929	other
CL2001032307AA (testset)	other	0.01123	0.98877	other
CL2001032308AA	other	1e-04	0.9999	other
CL2001032309AA	other	3e-05	0.99997	other
CL2001032310AA	other	3e-05	0.99997	other
CL2001032311AA (testset)	other	0	1	other
CL2001032312AA	other	4e-05	0.99996	other
CL2001032313AA (testset)	other	0.00016	0.99984	other
CL2001032314AA (testset)	other	1e-05	0.99999	other
CL2001032316AA	other	1e-05	0.99999	other
CL2001032601AA	other	1e-04	0.9999	other
CL2001032602AA	other	0.00011	0.99989	other
CL2001032604AA	other	4e-05	0.99996	other
CL2001032607AA	other	0.00159	0.99841	other
CL2001032608AA	other	0.00016	0.99984	other
CL2001032610AA	other	8e-05	0.99992	other
CL2001032612AA	other	0.00017	0.99983	other
CL2001032613AA (testset)	other	3e-05	0.99997	other
CL2001032614AA	other	1e-05	0.99999	other
CL2001032616AA	other	8e-05	0.99992	other
CL2001032617AA (testset)	other	4e-05	0.99996	other
CL2001032620AA (testset)	other	5e-05	0.99995	other
CL2001032625AA	other	1e-05	0.99999	other
CL2001032627AA	other	0.00032	0.99968	other
CL2001032628AA	other	6e-05	0.99994	other
CL2001032629AA	other	3e-05	0.99997	other
CL2001032630AA (testset)	other	0.01384	0.98616	other
CL2001032632AA	other	4e-05	0.99996	other
CL2001032638AA	other	0.02289	0.97711	other
CL2001032640AA (testset)	other	0	1	other
CL2001032643AA	other	4e-05	0.99996	other
CL2001032644AA (testset)	other	8e-05	0.99992	other
CL2001032647AA	other	0.00012	0.99988	other
CL2001032701AA	other	6e-05	0.99994	other
CL2001032702AA	other	0.00053	0.99947	other
CL2001032703AA	other	1e-05	0.99999	other
CL2001032704AA	other	0.00076	0.99924	other
CL2001032706AA (testset)	other	0.00018	0.99982	other
CL2001032709AA	other	0.00048	0.99952	other
CL2001032716AA	other	0.00099	0.99901	other
CL2001032717AA	other	0.00035	0.99965	other
CL2001032718AA (testset)	NORMAL	0.99905	0.00095	NORMAL
CL2001032719AA	other	0.00363	0.99637	other
CL2001032720AA	other	1e-05	0.99999	other
CL2001032722AA	other	0.00322	0.99678	other
CL2001032724AA	NORMAL	0.04181	0.95819	other
CL2001032725AA	NORMAL	1	0	NORMAL
CL2001032727AA	NORMAL	0.98715	0.01285	NORMAL
CL2001032729AA	other	1e-05	0.99999	other
CL2001032730AA (testset)	other	0	1	other
CL2001032732AA (testset)	other	2e-05	0.99998	other
CL2001032733AA	other	0.00128	0.99872	other
CL2001032738AA (testset)	other	0.00034	0.99966	other
CL2001032742AA (testset)	other	2e-05	0.99998	other
CL2001032746AA	other	0.00044	0.99956	other
CL2001032747AA	other	0.00038	0.99962	other
CL2001032833AA	other	3e-05	0.99997	other
CL2001032836AA (testset)	other	2e-05	0.99998	other
CL2001032838AA (testset)	other	0.00031	0.99969	other
CL2001032839AA	other	7e-05	0.99993	other
CL2001032841AA	other	2e-05	0.99998	other
CL2001032842AA	other	1e-05	0.99999	other
CL2001032843AA (testset)	other	2e-05	0.99998	other
CL2001032845AA (testset)	other	6e-05	0.99994	other
CL2001032846AA	other	0.005	0.995	other
CL2001032847AA	other	0.2563	0.7437	other
CL2001032848AA	other	0.92716	0.07284	NORMAL
CL2001032850AA	other	1e-04	0.9999	other
CL2001032853AA	other	0.00655	0.99345	other
CL2001032854AA (testset)	other	3e-05	0.99997	other
CL2001032856AA	other	0.00018	0.99982	other
CL2001032857AA	other	0.00019	0.99981	other
CL2001032860AA (testset)	other	0.00442	0.99558	other
CL2001040305AA	other	2e-05	0.99998	other
CL2001040306AA	other	3e-05	0.99997	other
CL2001041708AA	other	2e-05	0.99998	other
CL2001041711AA	other	6e-05	0.99994	other
CL2001041716AA	other	0.00414	0.99586	other
CL2001042501AA (testset)	other	0.00013	0.99987	other
CL2001042505AA	other	0.00037	0.99963	other
CL2001042506AA (testset)	other	0.00028	0.99972	other