GO:0006520

GO:0006520

amino acid metabolism (annotated genes)

Biological Process

Parent node

GO:0006520	amino acid metabolism

This leaf node contains 48 genes

The following 34 of these are used in classification:

	Symbol	Genename	NORMAL score	other score
35606_at	HDC	histidine decarboxylase	1.1464	-0.1017
33731_at	SLC7A7	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	0.8766	-0.0778
40765_at	KIAA0251	KIAA0251 protein	-0.647	0.0574
33386_at	GCAT	glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase)	-0.6171	0.0547
32186_at	SLC7A5	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	-0.5492	0.0487
36636_at	OAT	ornithine aminotransferase (gyrate atrophy)	-0.5115	0.0454
41868_at	GGT1	gamma-glutamyltransferase 1	0.5003	-0.0444
35697_at	PTS	6-pyruvoyltetrahydropterin synthase	-0.4794	0.0425
749_at	CAD	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	-0.3551	0.0315
36274_at	SLC7A1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	-0.3404	0.0302
40201_at	DDC	dopa decarboxylase (aromatic L-amino acid decarboxylase)	-0.3251	0.0288
40764_at	GOT2	glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)	-0.2984	0.0265
39748_at	SLC7A1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	-0.2972	0.0264
33580_r_at	GCAT	glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase)	-0.2649	0.0235
32031_at	CAD	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	-0.2594	0.023
36475_at	GCAT	glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase)	-0.2515	0.0223
38474_at	CBS	cystathionine-beta-synthase	-0.2153	0.0191
37183_at	GAD1	glutamate decarboxylase 1 (brain, 67kDa)	-0.1834	0.0163
40390_at	SDS	serine dehydratase	-0.1817	0.0161
35711_at	GA	liver mitochondrial glutaminase	-0.1722	0.0153
39533_at	SLC7A6	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	0.1513	-0.0134
36566_at	CTNS	cystinosis, nephropathic	0.1368	-0.0121
31690_at	GLUD2	glutamate dehydrogenase 2	0.1294	-0.0115
37713_at	ACY1	aminoacylase 1	-0.1228	0.0109
38386_r_at	GSS	glutathione synthetase	-0.1066	0.0095
31691_g_at	GLUD2	glutamate dehydrogenase 2	-0.0863	0.0077
34758_at	EIF2B5	eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82kDa	-0.0856	0.0076
32962_at	CTH	cystathionase (cystathionine gamma-lyase)	-0.0809	0.0072
40236_at	SLC7A2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	-0.0695	0.0062
683_at	OTC	ornithine carbamoyltransferase	0.0408	-0.0036
1961_f_at	NOS3	nitric oxide synthase 3 (endothelial cell)	-0.0337	0.003
576_at	NOS3	nitric oxide synthase 3 (endothelial cell)	0.0286	-0.0025
41631_f_at	GSS	glutathione synthetase	-0.0193	0.0017
39284_at	SLC3A1	solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1	-0.0106	9e-04

Performance on training data

• Error rate: 0.00741
• Performance: 0.09834
• Redundancy: 3.49175

	Sensitivity	Specificity
NORMAL	0.90909	1
other	1	0.90909

Performance on test data

• Error rate: 0.02941
• Performance: 0.17223
• Redundancy: 3.45179

	Sensitivity	Specificity
NORMAL	0.66667	1
other	1	0.66667

Predictions

	Class	NORMAL	other	Predictionn
CL2001031606AA	other	0	1	other
CL2001031607AA	other	0.01613	0.98387	other
CL2001031608AA	other	0.07433	0.92567	other
CL2001031609AA	other	0.00442	0.99558	other
CL2001031611AA	other	0.00044	0.99956	other
CL2001031612AA	other	0.00088	0.99912	other
CL2001031613AA	other	0.00123	0.99877	other
CL2001031615AA	other	0.00958	0.99042	other
CL2001031616AA (testset)	other	0.00099	0.99901	other
CL2001031618AA	other	0.20093	0.79907	other
CL2001031620AA (testset)	other	0.00153	0.99847	other
CL2001031621AA (testset)	other	0.00049	0.99951	other
CL2001031622AA	other	4e-05	0.99996	other
CL2001031625AA	other	0.0046	0.9954	other
CL2001031627AA (testset)	other	0.04667	0.95333	other
CL2001031628AA (testset)	other	0.00333	0.99667	other
CL2001031629AA	other	0.00061	0.99939	other
CL2001031630AA (testset)	other	0.04437	0.95563	other
CL2001031631AA	other	0.00885	0.99115	other
CL2001031632AA	other	0.00098	0.99902	other
CL2001031634AA	other	0.01653	0.98347	other
CL2001031635AA	other	0.12305	0.87695	other
CL2001031636AA	other	0.01266	0.98734	other
CL2001032002AA	other	0.01341	0.98659	other
CL2001032005AA	other	0.00066	0.99934	other
CL2001032008AA	other	0.00061	0.99939	other
CL2001032009AA (testset)	other	0.03567	0.96433	other
CL2001032010AA (testset)	NORMAL	0.55739	0.44261	NORMAL
CL2001032011AA (testset)	other	0.08406	0.91594	other
CL2001032012AA (testset)	other	0.12718	0.87282	other
CL2001032013AA (testset)	other	0.13052	0.86948	other
CL2001032015AA	other	0.01967	0.98033	other
CL2001032016AA (testset)	other	0.00289	0.99711	other
CL2001032019AA	other	0.00236	0.99764	other
CL2001032020AA (testset)	other	0.01204	0.98796	other
CL2001032025AA	other	0.00565	0.99435	other
CL2001032026AA	other	0.01339	0.98661	other
CL2001032027AA	other	0.00884	0.99116	other
CL2001032030AA	other	0.00024	0.99976	other
CL2001032031AA (testset)	other	0.00832	0.99168	other
CL2001032032AA	other	0.18244	0.81756	other
CL2001032034AA	other	0.11601	0.88399	other
CL2001032036AA	other	0.00124	0.99876	other
CL2001032041AA	NORMAL	0.92182	0.07818	NORMAL
CL2001032043AA	NORMAL	0.90196	0.09804	NORMAL
CL2001032044AA	other	0.00103	0.99897	other
CL2001032045AA (testset)	NORMAL	0.69003	0.30997	NORMAL
CL2001032046AA	NORMAL	0.90465	0.09535	NORMAL
CL2001032101AA	other	0.00532	0.99468	other
CL2001032102AA	NORMAL	0.70889	0.29111	NORMAL
CL2001032103AA	other	0.01269	0.98731	other
CL2001032104AA	other	0.00027	0.99973	other
CL2001032105AA	other	0.0013	0.9987	other
CL2001032107AA	other	0.00095	0.99905	other
CL2001032108AA	other	0.27519	0.72481	other
CL2001032109AA (testset)	other	0.26087	0.73913	other
CL2001032110AA	other	0.09373	0.90627	other
CL2001032111AA	other	0.00782	0.99218	other
CL2001032113AA (testset)	other	0.00079	0.99921	other
CL2001032114AA	other	0.08164	0.91836	other
CL2001032115AA (testset)	other	0.02172	0.97828	other
CL2001032116AA (testset)	other	0.01622	0.98378	other
CL2001032117AA	other	1e-04	0.9999	other
CL2001032121AA	other	0.00126	0.99874	other
CL2001032122AA	other	0.00033	0.99967	other
CL2001032124AA	other	0.00055	0.99945	other
CL2001032125AA	other	3e-05	0.99997	other
CL2001032127AA (testset)	other	0.00144	0.99856	other
CL2001032128AA (testset)	NORMAL	0.24632	0.75368	other
CL2001032129AA (testset)	other	5e-05	0.99995	other
CL2001032130AA	other	0.00087	0.99913	other
CL2001032132AA	other	0.00526	0.99474	other
CL2001032134AA (testset)	other	0.00154	0.99846	other
CL2001032135AA	other	0.00783	0.99217	other
CL2001032136AA (testset)	other	0.00328	0.99672	other
CL2001032138AA (testset)	other	0.01614	0.98386	other
CL2001032141AA (testset)	other	0.00074	0.99926	other
CL2001032142AA	other	0.01245	0.98755	other
CL2001032144AA	other	0.00037	0.99963	other
CL2001032145AA	other	0.00132	0.99868	other
CL2001032147AA	NORMAL	0.36142	0.63858	other
CL2001032149AA (testset)	other	0.01208	0.98792	other
CL2001032151AA	other	0.00023	0.99977	other
CL2001032152AA	other	0.00245	0.99755	other
CL2001032153AA	other	0.00133	0.99867	other
CL2001032155AA	other	0.01167	0.98833	other
CL2001032156AA (testset)	other	0.03066	0.96934	other
CL2001032202AA (testset)	NORMAL	0.82117	0.17883	NORMAL
CL2001032206AA	NORMAL	0.94763	0.05237	NORMAL
CL2001032207AA	other	4e-05	0.99996	other
CL2001032209AA	other	0.00011	0.99989	other
CL2001032210AA	other	0.00104	0.99896	other
CL2001032211AA (testset)	other	0.00058	0.99942	other
CL2001032212AA	other	0.00392	0.99608	other
CL2001032213AA	other	0.05981	0.94019	other
CL2001032214AA (testset)	other	0.01225	0.98775	other
CL2001032217AA (testset)	other	0.00205	0.99795	other
CL2001032218AA	other	0.0031	0.9969	other
CL2001032219AA (testset)	other	0.00197	0.99803	other
CL2001032220AA	NORMAL	0.81298	0.18702	NORMAL
CL2001032222AA (testset)	other	0.00014	0.99986	other
CL2001032229AA (testset)	other	0.00803	0.99197	other
CL2001032231AA	other	0.00979	0.99021	other
CL2001032232AA	other	0.00119	0.99881	other
CL2001032233AA (testset)	other	0.00414	0.99586	other
CL2001032238AA	other	0.0075	0.9925	other
CL2001032239AA	other	3e-05	0.99997	other
CL2001032240AA	other	0.00056	0.99944	other
CL2001032241AA (testset)	other	0.01863	0.98137	other
CL2001032242AA	other	0.00996	0.99004	other
CL2001032243AA	other	0.0351	0.9649	other
CL2001032248AA	other	0.00696	0.99304	other
CL2001032249AA (testset)	other	0.00628	0.99372	other
CL2001032252AA (testset)	other	0.00014	0.99986	other
CL2001032254AA (testset)	other	0.03959	0.96041	other
CL2001032255AA	other	0.00115	0.99885	other
CL2001032256AA (testset)	NORMAL	0.22011	0.77989	other
CL2001032259AA (testset)	other	0.03909	0.96091	other
CL2001032260AA	other	0.00227	0.99773	other
CL2001032301AA	other	0.00116	0.99884	other
CL2001032304AA	NORMAL	0.54586	0.45414	NORMAL
CL2001032305AA (testset)	other	0.0016	0.9984	other
CL2001032306AA (testset)	other	0.0036	0.9964	other
CL2001032307AA (testset)	other	0.01434	0.98566	other
CL2001032308AA	other	0.00547	0.99453	other
CL2001032309AA	other	0.01232	0.98768	other
CL2001032310AA	other	0.02724	0.97276	other
CL2001032311AA (testset)	other	0.0041	0.9959	other
CL2001032312AA	other	0.07028	0.92972	other
CL2001032313AA (testset)	other	0.00414	0.99586	other
CL2001032314AA (testset)	other	0.00126	0.99874	other
CL2001032316AA	other	0.00867	0.99133	other
CL2001032601AA	other	0.00486	0.99514	other
CL2001032602AA	other	0.00692	0.99308	other
CL2001032604AA	other	0.00821	0.99179	other
CL2001032607AA	other	0.00585	0.99415	other
CL2001032608AA	other	0.00795	0.99205	other
CL2001032610AA	other	0.01442	0.98558	other
CL2001032612AA	other	0.0157	0.9843	other
CL2001032613AA (testset)	other	0.05829	0.94171	other
CL2001032614AA	other	0.00375	0.99625	other
CL2001032616AA	other	0.07364	0.92636	other
CL2001032617AA (testset)	other	0.00088	0.99912	other
CL2001032620AA (testset)	other	0.07448	0.92552	other
CL2001032625AA	other	0.00499	0.99501	other
CL2001032627AA	other	7e-05	0.99993	other
CL2001032628AA	other	0.01234	0.98766	other
CL2001032629AA	other	0.01354	0.98646	other
CL2001032630AA (testset)	other	0.00021	0.99979	other
CL2001032632AA	other	0.06099	0.93901	other
CL2001032638AA	other	0.00454	0.99546	other
CL2001032640AA (testset)	other	0.0346	0.9654	other
CL2001032643AA	other	0.02352	0.97648	other
CL2001032644AA (testset)	other	0.00344	0.99656	other
CL2001032647AA	other	0.18971	0.81029	other
CL2001032701AA	other	0.10452	0.89548	other
CL2001032702AA	other	0.00163	0.99837	other
CL2001032703AA	other	0.00103	0.99897	other
CL2001032704AA	other	0.00439	0.99561	other
CL2001032706AA (testset)	other	0.00469	0.99531	other
CL2001032709AA	other	0.00989	0.99011	other
CL2001032716AA	other	0.00049	0.99951	other
CL2001032717AA	other	0.0296	0.9704	other
CL2001032718AA (testset)	NORMAL	0.63554	0.36446	NORMAL
CL2001032719AA	other	0.00252	0.99748	other
CL2001032720AA	other	0.01824	0.98176	other
CL2001032722AA	other	0.00112	0.99888	other
CL2001032724AA	NORMAL	0.57821	0.42179	NORMAL
CL2001032725AA	NORMAL	0.79432	0.20568	NORMAL
CL2001032727AA	NORMAL	0.8347	0.1653	NORMAL
CL2001032729AA	other	0.005	0.995	other
CL2001032730AA (testset)	other	0.00359	0.99641	other
CL2001032732AA (testset)	other	0.00038	0.99962	other
CL2001032733AA	other	0.01579	0.98421	other
CL2001032738AA (testset)	other	0.00152	0.99848	other
CL2001032742AA (testset)	other	0.00241	0.99759	other
CL2001032746AA	other	0.00766	0.99234	other
CL2001032747AA	other	0.00651	0.99349	other
CL2001032833AA	other	0.00035	0.99965	other
CL2001032836AA (testset)	other	2e-05	0.99998	other
CL2001032838AA (testset)	other	0.00051	0.99949	other
CL2001032839AA	other	0.00028	0.99972	other
CL2001032841AA	other	0.00525	0.99475	other
CL2001032842AA	other	0.00171	0.99829	other
CL2001032843AA (testset)	other	0.00169	0.99831	other
CL2001032845AA (testset)	other	0.11354	0.88646	other
CL2001032846AA	other	0.0013	0.9987	other
CL2001032847AA	other	0.00216	0.99784	other
CL2001032848AA	other	0.2081	0.7919	other
CL2001032850AA	other	0.00288	0.99712	other
CL2001032853AA	other	0.00043	0.99957	other
CL2001032854AA (testset)	other	0.02265	0.97735	other
CL2001032856AA	other	0.06027	0.93973	other
CL2001032857AA	other	0.01583	0.98417	other
CL2001032860AA (testset)	other	0.00055	0.99945	other
CL2001040305AA	other	0.01051	0.98949	other
CL2001040306AA	other	0.14524	0.85476	other
CL2001041708AA	other	0.0282	0.9718	other
CL2001041711AA	other	0.09546	0.90454	other
CL2001041716AA	other	0.0782	0.9218	other
CL2001042501AA (testset)	other	0.00377	0.99623	other
CL2001042505AA	other	0.0142	0.9858	other
CL2001042506AA (testset)	other	0.20877	0.79123	other