GO:0006464

GO:0006464

protein modification (annotated genes)

Biological Process

Parent node

GO:0006464	protein modification

This leaf node contains 57 genes

The following 57 of these are used in classification:

	Symbol	Genename	NORMAL score	other score
37895_at	SLC35A1	solute carrier family 35 (CMP-sialic acid transporter), member A1	0.7997	-0.0709
2012_s_at	PRKDC	protein kinase, DNA-activated, catalytic polypeptide	-0.5726	0.0508
34774_at	PPT1	palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile)	0.554	-0.0491
34795_at	PLOD2	procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase) 2	-0.5319	0.0472
34670_at	MAN2B1	mannosidase, alpha, class 2B, member 1	0.474	-0.0421
37699_at	METAP2	methionyl aminopeptidase 2	0.4326	-0.0384
37648_at	KIAA0153	KIAA0153 protein	-0.419	0.0372
36811_at	LOXL1	lysyl oxidase-like 1	-0.3771	0.0334
38682_at	BAP1	BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)	0.3714	-0.033
37472_at	MANBA	mannosidase, beta A, lysosomal	0.3495	-0.031
41775_at	ICMT	isoprenylcysteine carboxyl methyltransferase	0.3435	-0.0305
36606_at	CPE	carboxypeptidase E	-0.3407	0.0302
40129_at	PRKDC	protein kinase, DNA-activated, catalytic polypeptide	-0.3236	0.0287
1167_s_at	MMP15	matrix metalloproteinase 15 (membrane-inserted)	-0.3188	0.0283
37764_at	HLCS	holocarboxylase synthetase (biotin-[proprionyl-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	-0.318	0.0282
111_at	RABGGTA	Rab geranylgeranyltransferase, alpha subunit	0.3147	-0.0279
923_at	UBL4	ubiquitin-like 4	-0.3115	0.0276
100_g_at	RABGGTA	Rab geranylgeranyltransferase, alpha subunit	0.2998	-0.0266
1614_s_at	USP6	ubiquitin specific protease 6 (Tre-2 oncogene)	-0.2952	0.0262
38109_at	PPT2	palmitoyl-protein thioesterase 2	0.2798	-0.0248
160037_at	MMP15	matrix metalloproteinase 15 (membrane-inserted)	-0.2564	0.0227
35966_at	QPCT	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	-0.2525	0.0224
537_f_at	FBXW3	F-box and WD-40 domain protein 3	-0.2455	0.0218
40394_at	GGCX	gamma-glutamyl carboxylase	-0.2433	0.0216
38108_at	PPT2	palmitoyl-protein thioesterase 2	-0.2406	0.0213
517_at	FBXW3	F-box and WD-40 domain protein 3	-0.2355	0.0209
1250_at	PRKDC	protein kinase, DNA-activated, catalytic polypeptide	-0.2293	0.0203
41039_at	TTLL1	tubulin tyrosine ligase-like family, member 1	-0.2166	0.0192
37836_at	KIAA0998	KIAA0998	0.1949	-0.0173
40630_at	PIGH	phosphatidylinositol glycan, class H	-0.1802	0.016
37441_at	LIPT1	lipoyltransferase 1	-0.1749	0.0155
39387_at	SEPHS1	selenophosphate synthetase 1	0.1685	-0.0149
36525_at	FBXL2	F-box and leucine-rich repeat protein 2	-0.1646	0.0146
34803_at	USP12	ubiquitin specific protease 12	0.1633	-0.0145
38637_at	LOX	lysyl oxidase	-0.1482	0.0131
33452_at	PLAT	plasminogen activator, tissue	-0.1423	0.0126
35674_at	PADI2	peptidyl arginine deiminase, type II	-0.1049	0.0093
31367_at	KIAA0998	KIAA0998	-0.1044	0.0093
40154_at	TTLL3	tubulin tyrosine ligase-like family, member 3	0.0991	-0.0088
37703_at	RABGGTB	Rab geranylgeranyltransferase, beta subunit	-0.0935	0.0083
36184_at	PLOD	procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase, Ehlers-Danlos syndrome type VI)	-0.0869	0.0077
35100_at	SIAT8C	sialyltransferase 8C (alpha2,3Galbeta1,4GlcNAcalpha 2,8-sialyltransferase)	-0.0861	0.0076
40629_at	PIGH	phosphatidylinositol glycan, class H	0.083	-0.0074
31548_at	ADPRH	ADP-ribosylarginine hydrolase	-0.0798	0.0071
32671_at	KIAA0173	KIAA0173 gene product	0.0728	-0.0065
36035_at	GPAA1	GPAA1P anchor attachment protein 1 homolog (yeast)	-0.0689	0.0061
38956_at	NAGPA	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	0.0581	-0.0052
36759_at	CHRM3	cholinergic receptor, muscarinic 3	-0.0563	0.005
39801_at	PLOD3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	0.0426	-0.0038
781_at	RABGGTB	Rab geranylgeranyltransferase, beta subunit	-0.0368	0.0033
33962_at	PHEX	phosphate regulating endopeptidase homolog, X-linked (hypophosphatemia, vitamin D resistant rickets)	0.0318	-0.0028
1695_at	NEDD8	neural precursor cell expressed, developmentally down-regulated 8	-0.0269	0.0024
36480_at	PHKA2	phosphorylase kinase, alpha 2 (liver)	-0.0269	0.0024
31526_f_at	USP6	ubiquitin specific protease 6 (Tre-2 oncogene)	0.0241	-0.0021
33043_at	USP6	ubiquitin specific protease 6 (Tre-2 oncogene)	-0.0183	0.0016
1613_s_at	USP6	ubiquitin specific protease 6 (Tre-2 oncogene)	-0.0147	0.0013
33424_at	RPN1	ribophorin I	0.0046	-4e-04

Performance on training data

• Error rate: 0.03704
• Performance: 0.17618
• Redundancy: 3.45163

	Sensitivity	Specificity
NORMAL	0.63636	0.99194
other	0.99194	0.63636

Performance on test data

• Error rate: 0.07353
• Performance: 0.35327
• Redundancy: 3.40333

	Sensitivity	Specificity
NORMAL	0.16667	1
other	1	0.16667

Predictions

	Class	NORMAL	other	Predictionn
CL2001031606AA	other	3e-04	0.9997	other
CL2001031607AA	other	0.08184	0.91816	other
CL2001031608AA	other	0.07271	0.92729	other
CL2001031609AA	other	0.00213	0.99787	other
CL2001031611AA	other	0.00158	0.99842	other
CL2001031612AA	other	0.01032	0.98968	other
CL2001031613AA	other	0.08826	0.91174	other
CL2001031615AA	other	0.00472	0.99528	other
CL2001031616AA (testset)	other	0.01135	0.98865	other
CL2001031618AA	other	0.0126	0.9874	other
CL2001031620AA (testset)	other	5e-04	0.9995	other
CL2001031621AA (testset)	other	0.00175	0.99825	other
CL2001031622AA	other	0.00592	0.99408	other
CL2001031625AA	other	0.05623	0.94377	other
CL2001031627AA (testset)	other	0.00816	0.99184	other
CL2001031628AA (testset)	other	0.00057	0.99943	other
CL2001031629AA	other	0.00025	0.99975	other
CL2001031630AA (testset)	other	0.00719	0.99281	other
CL2001031631AA	other	0.00415	0.99585	other
CL2001031632AA	other	0.00082	0.99918	other
CL2001031634AA	other	0.00119	0.99881	other
CL2001031635AA	other	0.07626	0.92374	other
CL2001031636AA	other	0.00071	0.99929	other
CL2001032002AA	other	0.0126	0.9874	other
CL2001032005AA	other	0.006	0.994	other
CL2001032008AA	other	0.00117	0.99883	other
CL2001032009AA (testset)	other	0.00028	0.99972	other
CL2001032010AA (testset)	NORMAL	0.23793	0.76207	other
CL2001032011AA (testset)	other	0.01728	0.98272	other
CL2001032012AA (testset)	other	0.0458	0.9542	other
CL2001032013AA (testset)	other	0.0401	0.9599	other
CL2001032015AA	other	0.01086	0.98914	other
CL2001032016AA (testset)	other	0.01372	0.98628	other
CL2001032019AA	other	0.00668	0.99332	other
CL2001032020AA (testset)	other	0.04879	0.95121	other
CL2001032025AA	other	0.00424	0.99576	other
CL2001032026AA	other	0.00285	0.99715	other
CL2001032027AA	other	0.06424	0.93576	other
CL2001032030AA	other	0.01397	0.98603	other
CL2001032031AA (testset)	other	0.06592	0.93408	other
CL2001032032AA	other	0.02888	0.97112	other
CL2001032034AA	other	0.21147	0.78853	other
CL2001032036AA	other	4e-05	0.99996	other
CL2001032041AA	NORMAL	0.35872	0.64128	other
CL2001032043AA	NORMAL	0.70833	0.29167	NORMAL
CL2001032044AA	other	0.00375	0.99625	other
CL2001032045AA (testset)	NORMAL	0.5301	0.4699	NORMAL
CL2001032046AA	NORMAL	0.64109	0.35891	NORMAL
CL2001032101AA	other	0.01867	0.98133	other
CL2001032102AA	NORMAL	0.57698	0.42302	NORMAL
CL2001032103AA	other	0.05709	0.94291	other
CL2001032104AA	other	0.01559	0.98441	other
CL2001032105AA	other	0.00375	0.99625	other
CL2001032107AA	other	0.00498	0.99502	other
CL2001032108AA	other	0.01803	0.98197	other
CL2001032109AA (testset)	other	0.15652	0.84348	other
CL2001032110AA	other	0.01509	0.98491	other
CL2001032111AA	other	0.10044	0.89956	other
CL2001032113AA (testset)	other	0.00043	0.99957	other
CL2001032114AA	other	0.00544	0.99456	other
CL2001032115AA (testset)	other	0.01568	0.98432	other
CL2001032116AA (testset)	other	0.00414	0.99586	other
CL2001032117AA	other	0.00091	0.99909	other
CL2001032121AA	other	0.00025	0.99975	other
CL2001032122AA	other	0.00222	0.99778	other
CL2001032124AA	other	0.0071	0.9929	other
CL2001032125AA	other	0.00937	0.99063	other
CL2001032127AA (testset)	other	0.00741	0.99259	other
CL2001032128AA (testset)	NORMAL	0.43325	0.56675	other
CL2001032129AA (testset)	other	0.00556	0.99444	other
CL2001032130AA	other	0.00868	0.99132	other
CL2001032132AA	other	0.00494	0.99506	other
CL2001032134AA (testset)	other	0.00284	0.99716	other
CL2001032135AA	other	0.02461	0.97539	other
CL2001032136AA (testset)	other	0.00196	0.99804	other
CL2001032138AA (testset)	other	0.01355	0.98645	other
CL2001032141AA (testset)	other	0.00076	0.99924	other
CL2001032142AA	other	0.00857	0.99143	other
CL2001032144AA	other	0.00187	0.99813	other
CL2001032145AA	other	0.00616	0.99384	other
CL2001032147AA	NORMAL	0.32508	0.67492	other
CL2001032149AA (testset)	other	0.00733	0.99267	other
CL2001032151AA	other	0.00291	0.99709	other
CL2001032152AA	other	0.00759	0.99241	other
CL2001032153AA	other	0.00545	0.99455	other
CL2001032155AA	other	0.7908	0.2092	NORMAL
CL2001032156AA (testset)	other	0.00444	0.99556	other
CL2001032202AA (testset)	NORMAL	0.37662	0.62338	other
CL2001032206AA	NORMAL	0.32609	0.67391	other
CL2001032207AA	other	0.01586	0.98414	other
CL2001032209AA	other	0.00977	0.99023	other
CL2001032210AA	other	0.00719	0.99281	other
CL2001032211AA (testset)	other	0.00056	0.99944	other
CL2001032212AA	other	0.00239	0.99761	other
CL2001032213AA	other	0.00974	0.99026	other
CL2001032214AA (testset)	other	0.01127	0.98873	other
CL2001032217AA (testset)	other	0.00412	0.99588	other
CL2001032218AA	other	0.00043	0.99957	other
CL2001032219AA (testset)	other	0.03059	0.96941	other
CL2001032220AA	NORMAL	0.53935	0.46065	NORMAL
CL2001032222AA (testset)	other	0.00273	0.99727	other
CL2001032229AA (testset)	other	0.00318	0.99682	other
CL2001032231AA	other	0.00987	0.99013	other
CL2001032232AA	other	0.00446	0.99554	other
CL2001032233AA (testset)	other	0.02282	0.97718	other
CL2001032238AA	other	0.00649	0.99351	other
CL2001032239AA	other	0.00404	0.99596	other
CL2001032240AA	other	0.00475	0.99525	other
CL2001032241AA (testset)	other	0.00809	0.99191	other
CL2001032242AA	other	0.00322	0.99678	other
CL2001032243AA	other	0.01083	0.98917	other
CL2001032248AA	other	0.00721	0.99279	other
CL2001032249AA (testset)	other	0.00247	0.99753	other
CL2001032252AA (testset)	other	0.00039	0.99961	other
CL2001032254AA (testset)	other	0.00774	0.99226	other
CL2001032255AA	other	0.00862	0.99138	other
CL2001032256AA (testset)	NORMAL	0.00255	0.99745	other
CL2001032259AA (testset)	other	0.04046	0.95954	other
CL2001032260AA	other	0.00449	0.99551	other
CL2001032301AA	other	0.00417	0.99583	other
CL2001032304AA	NORMAL	0.33768	0.66232	other
CL2001032305AA (testset)	other	0.00848	0.99152	other
CL2001032306AA (testset)	other	0.0046	0.9954	other
CL2001032307AA (testset)	other	0.11638	0.88362	other
CL2001032308AA	other	0.00142	0.99858	other
CL2001032309AA	other	0.03497	0.96503	other
CL2001032310AA	other	0.0264	0.9736	other
CL2001032311AA (testset)	other	0.00046	0.99954	other
CL2001032312AA	other	0.0073	0.9927	other
CL2001032313AA (testset)	other	0.00101	0.99899	other
CL2001032314AA (testset)	other	0.00539	0.99461	other
CL2001032316AA	other	0.00192	0.99808	other
CL2001032601AA	other	0.00433	0.99567	other
CL2001032602AA	other	0.00718	0.99282	other
CL2001032604AA	other	0.00174	0.99826	other
CL2001032607AA	other	0.00163	0.99837	other
CL2001032608AA	other	0.00054	0.99946	other
CL2001032610AA	other	0.01629	0.98371	other
CL2001032612AA	other	0.00219	0.99781	other
CL2001032613AA (testset)	other	0.01743	0.98257	other
CL2001032614AA	other	0.00017	0.99983	other
CL2001032616AA	other	0.01573	0.98427	other
CL2001032617AA (testset)	other	0.00094	0.99906	other
CL2001032620AA (testset)	other	0.08118	0.91882	other
CL2001032625AA	other	0.00232	0.99768	other
CL2001032627AA	other	0.00091	0.99909	other
CL2001032628AA	other	0.00651	0.99349	other
CL2001032629AA	other	0.00652	0.99348	other
CL2001032630AA (testset)	other	0.00301	0.99699	other
CL2001032632AA	other	0.00574	0.99426	other
CL2001032638AA	other	0.00195	0.99805	other
CL2001032640AA (testset)	other	0.06324	0.93676	other
CL2001032643AA	other	0.00166	0.99834	other
CL2001032644AA (testset)	other	0.00159	0.99841	other
CL2001032647AA	other	0.03633	0.96367	other
CL2001032701AA	other	0.00226	0.99774	other
CL2001032702AA	other	0.03653	0.96347	other
CL2001032703AA	other	0.00144	0.99856	other
CL2001032704AA	other	0.00892	0.99108	other
CL2001032706AA (testset)	other	0.01134	0.98866	other
CL2001032709AA	other	0.0092	0.9908	other
CL2001032716AA	other	0.02076	0.97924	other
CL2001032717AA	other	0.0195	0.9805	other
CL2001032718AA (testset)	NORMAL	0.18626	0.81374	other
CL2001032719AA	other	0.00348	0.99652	other
CL2001032720AA	other	0.00467	0.99533	other
CL2001032722AA	other	0.01124	0.98876	other
CL2001032724AA	NORMAL	0.8117	0.1883	NORMAL
CL2001032725AA	NORMAL	0.6587	0.3413	NORMAL
CL2001032727AA	NORMAL	0.54173	0.45827	NORMAL
CL2001032729AA	other	0.01944	0.98056	other
CL2001032730AA (testset)	other	0.00436	0.99564	other
CL2001032732AA (testset)	other	0.00752	0.99248	other
CL2001032733AA	other	0.02395	0.97605	other
CL2001032738AA (testset)	other	0.00494	0.99506	other
CL2001032742AA (testset)	other	0.05345	0.94655	other
CL2001032746AA	other	0.00157	0.99843	other
CL2001032747AA	other	0.0066	0.9934	other
CL2001032833AA	other	0.02697	0.97303	other
CL2001032836AA (testset)	other	0.00032	0.99968	other
CL2001032838AA (testset)	other	0.05488	0.94512	other
CL2001032839AA	other	0.00038	0.99962	other
CL2001032841AA	other	0.00337	0.99663	other
CL2001032842AA	other	0.00075	0.99925	other
CL2001032843AA (testset)	other	0.00106	0.99894	other
CL2001032845AA (testset)	other	0.00438	0.99562	other
CL2001032846AA	other	0.01692	0.98308	other
CL2001032847AA	other	0.01556	0.98444	other
CL2001032848AA	other	0.35676	0.64324	other
CL2001032850AA	other	0.00732	0.99268	other
CL2001032853AA	other	0.00952	0.99048	other
CL2001032854AA (testset)	other	0.00539	0.99461	other
CL2001032856AA	other	0.00927	0.99073	other
CL2001032857AA	other	0.0277	0.9723	other
CL2001032860AA (testset)	other	0.00675	0.99325	other
CL2001040305AA	other	0.00262	0.99738	other
CL2001040306AA	other	0.01499	0.98501	other
CL2001041708AA	other	0.00984	0.99016	other
CL2001041711AA	other	0.39599	0.60401	other
CL2001041716AA	other	0.03266	0.96734	other
CL2001042501AA (testset)	other	0.01146	0.98854	other
CL2001042505AA	other	0.01136	0.98864	other
CL2001042506AA (testset)	other	0.20029	0.79971	other