GO:0006350

GO:0006350

transcription (annotated genes)

Biological Process

Parent node

GO:0006350	transcription

This leaf node contains 87 genes

The following 59 of these are used in classification:

	Symbol	Genename	NORMAL score	other score
280_g_at	NR4A1	nuclear receptor subfamily 4, group A, member 1	0.6085	-0.054
279_at	NR4A1	nuclear receptor subfamily 4, group A, member 1	0.5712	-0.0507
1248_at	POLR2H	polymerase (RNA) II (DNA directed) polypeptide H	-0.552	0.049
35631_at	POLR2H	polymerase (RNA) II (DNA directed) polypeptide H	-0.5422	0.0481
484_at	NCOA1	nuclear receptor coactivator 1	0.5148	-0.0457
40777_at	CTNNB1	catenin (cadherin-associated protein), beta 1, 88kDa	0.4392	-0.039
1486_at	POLR2J	polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa	-0.4214	0.0374
36118_at	NCOA1	nuclear receptor coactivator 1	0.4156	-0.0369
503_at	POLR2L	polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa	0.4006	-0.0355
34828_at	POLR2I	polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa	-0.3927	0.0348
391_at	PPP5C	protein phosphatase 5, catalytic subunit	-0.3668	0.0325
36186_at	RNPS1	RNA binding protein S1, serine-rich domain	-0.3455	0.0307
34855_at	PAPOLA	poly(A) polymerase alpha	-0.3362	0.0298
33726_at	POLR2D	polymerase (RNA) II (DNA directed) polypeptide D	-0.3271	0.029
36460_at	POLR1C	polymerase (RNA) I polypeptide C, 30kDa	-0.3191	0.0283
36244_at	ZNF239	zinc finger protein 239	-0.2995	0.0266
40791_at	POLR2A	polymerase (RNA) II (DNA directed) polypeptide A, 220kDa	0.2851	-0.0253
35841_at	POLR2L	polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa	0.2815	-0.025
39746_at	POLR2B	polymerase (RNA) II (DNA directed) polypeptide B, 140kDa	-0.2767	0.0245
36171_at	PC4	activated RNA polymerase II transcription cofactor 4	-0.2765	0.0245
1073_at	TCEA1	transcription elongation factor A (SII), 1	-0.2636	0.0234
33381_at	NCOA3	nuclear receptor coactivator 3	0.2519	-0.0223
38672_at	PPP1R10	protein phosphatase 1, regulatory subunit 10	0.2493	-0.0221
704_at	NFIA	nuclear factor I/A	0.2391	-0.0212
37809_at	HOXA9	homeo box A9	-0.2224	0.0197
32049_f_at	TCEB3	transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)	0.2213	-0.0196
35758_at	RUVBL2	RuvB-like 2 (E. coli)	-0.1886	0.0167
1406_at	NR2C1	nuclear receptor subfamily 2, group C, member 1	-0.1812	0.0161
39438_at	CREBL2	cAMP responsive element binding protein-like 2	0.1808	-0.016
34810_at	POLR2C	polymerase (RNA) II (DNA directed) polypeptide C, 33kDa	-0.1641	0.0146
211_at	DR1	down-regulator of transcription 1, TBP-binding (negative cofactor 2)	-0.1515	0.0134
38519_at	NR1H4	nuclear receptor subfamily 1, group H, member 4	0.145	-0.0129
392_g_at	PPP5C	protein phosphatase 5, catalytic subunit	-0.1447	0.0128
40124_at	RUVBL1	RuvB-like 1 (E. coli)	-0.1375	0.0122
929_at	PPARA	peroxisome proliferative activated receptor, alpha	-0.1349	0.012
38589_i_at	PTMA	prothymosin, alpha (gene sequence 28)	-0.1341	0.0119
37094_at	XRCC3	X-ray repair complementing defective repair in Chinese hamster cells 3	-0.134	0.0119
38055_at	POLR2J2	DNA directed RNA polymerase II polypeptide J-related gene	-0.1325	0.0117
32621_at	DR1	down-regulator of transcription 1, TBP-binding (negative cofactor 2)	-0.1311	0.0116
41495_at	ZF	HCF-binding transcription factor Zhangfei	-0.1295	0.0115
41606_at	DRG1	developmentally regulated GTP binding protein 1	-0.1291	0.0115
160021_r_at	PGR	progesterone receptor	-0.1205	0.0107
32550_r_at	CEBPA	CCAAT/enhancer binding protein (C/EBP), alpha	0.1198	-0.0106
141_s_at	BRF1	BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)	-0.1169	0.0104
32601_s_at	POLR2C	polymerase (RNA) II (DNA directed) polypeptide C, 33kDa	-0.1059	0.0094
36882_at	HOXD9	homeo box D9	-0.1048	0.0093
39747_at	POLR2G	polymerase (RNA) II (DNA directed) polypeptide G	-0.0776	0.0069
34241_at	GATA4	GATA binding protein 4	-0.0747	0.0066
37810_at	HOXA9	homeo box A9	-0.0713	0.0063
35273_at	MMS19L	MMS19-like (MET18 homolog, S. cerevisiae)	0.0603	-0.0053
40208_at	CIP29	cytokine induced protein 29 kDa	-0.0473	0.0042
37152_at	PPARD	peroxisome proliferative activated receptor, delta	-0.0357	0.0032
34419_at	RAD51L1	RAD51-like 1 (S. cerevisiae)	-0.0301	0.0027
41065_at	NFKBIB	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta	-0.0297	0.0026
41566_at	TCF15	transcription factor 15 (basic helix-loop-helix)	-0.0295	0.0026
603_at	NR2C1	nuclear receptor subfamily 2, group C, member 1	-0.0259	0.0023
38296_at	USP49	ubiquitin specific protease 49	-0.0226	0.002
32261_at	BAZ1B	bromodomain adjacent to zinc finger domain, 1B	-0.0176	0.0016
39200_s_at	CIP29	cytokine induced protein 29 kDa	0.0165	-0.0015

Performance on training data

• Error rate: 0.02222
• Performance: 0.17045
• Redundancy: 3.28608

	Sensitivity	Specificity
NORMAL	0.81818	0.99194
other	0.99194	0.81818

Performance on test data

• Error rate: 0.08824
• Performance: 0.38249
• Redundancy: 3.32751

	Sensitivity	Specificity
NORMAL	0.66667	0.93548
other	0.93548	0.66667

Predictions

	Class	NORMAL	other	Predictionn
CL2001031606AA	other	0	1	other
CL2001031607AA	other	0.00607	0.99393	other
CL2001031608AA	other	0.19265	0.80735	other
CL2001031609AA	other	0.31065	0.68935	other
CL2001031611AA	other	0.00569	0.99431	other
CL2001031612AA	other	0.00307	0.99693	other
CL2001031613AA	other	0.02346	0.97654	other
CL2001031615AA	other	0.00648	0.99352	other
CL2001031616AA (testset)	other	0.00708	0.99292	other
CL2001031618AA	other	0.14589	0.85411	other
CL2001031620AA (testset)	other	0.00024	0.99976	other
CL2001031621AA (testset)	other	0.00035	0.99965	other
CL2001031622AA	other	1e-05	0.99999	other
CL2001031625AA	other	0.06001	0.93999	other
CL2001031627AA (testset)	other	0.01321	0.98679	other
CL2001031628AA (testset)	other	0.00193	0.99807	other
CL2001031629AA	other	6e-04	0.9994	other
CL2001031630AA (testset)	other	0.00357	0.99643	other
CL2001031631AA	other	0.00069	0.99931	other
CL2001031632AA	other	0.00091	0.99909	other
CL2001031634AA	other	0.00686	0.99314	other
CL2001031635AA	other	0.005	0.995	other
CL2001031636AA	other	1e-04	0.9999	other
CL2001032002AA	other	0.03098	0.96902	other
CL2001032005AA	other	0.00104	0.99896	other
CL2001032008AA	other	0.00014	0.99986	other
CL2001032009AA (testset)	other	7e-05	0.99993	other
CL2001032010AA (testset)	NORMAL	0.05661	0.94339	other
CL2001032011AA (testset)	other	0.16293	0.83707	other
CL2001032012AA (testset)	other	0.00806	0.99194	other
CL2001032013AA (testset)	other	0.08344	0.91656	other
CL2001032015AA	other	0.41881	0.58119	other
CL2001032016AA (testset)	other	0.0019	0.9981	other
CL2001032019AA	other	0.00194	0.99806	other
CL2001032020AA (testset)	other	0.00189	0.99811	other
CL2001032025AA	other	0.00016	0.99984	other
CL2001032026AA	other	0.06951	0.93049	other
CL2001032027AA	other	0.03552	0.96448	other
CL2001032030AA	other	0.00298	0.99702	other
CL2001032031AA (testset)	other	0.74815	0.25185	NORMAL
CL2001032032AA	other	0.22264	0.77736	other
CL2001032034AA	other	0.24521	0.75479	other
CL2001032036AA	other	0.00176	0.99824	other
CL2001032041AA	NORMAL	0.94587	0.05413	NORMAL
CL2001032043AA	NORMAL	0.59578	0.40422	NORMAL
CL2001032044AA	other	0.01109	0.98891	other
CL2001032045AA (testset)	NORMAL	0.62969	0.37031	NORMAL
CL2001032046AA	NORMAL	0.86423	0.13577	NORMAL
CL2001032101AA	other	0.24787	0.75213	other
CL2001032102AA	NORMAL	0.66212	0.33788	NORMAL
CL2001032103AA	other	0.25035	0.74965	other
CL2001032104AA	other	0.00958	0.99042	other
CL2001032105AA	other	0.001	0.999	other
CL2001032107AA	other	0.00915	0.99085	other
CL2001032108AA	other	0.11695	0.88305	other
CL2001032109AA (testset)	other	0.90775	0.09225	NORMAL
CL2001032110AA	other	0.24637	0.75363	other
CL2001032111AA	other	0.18617	0.81383	other
CL2001032113AA (testset)	other	0.00209	0.99791	other
CL2001032114AA	other	0.02365	0.97635	other
CL2001032115AA (testset)	other	0.03298	0.96702	other
CL2001032116AA (testset)	other	0.00448	0.99552	other
CL2001032117AA	other	0.00041	0.99959	other
CL2001032121AA	other	4e-05	0.99996	other
CL2001032122AA	other	0.00289	0.99711	other
CL2001032124AA	other	0.01225	0.98775	other
CL2001032125AA	other	0.00136	0.99864	other
CL2001032127AA (testset)	other	0.0669	0.9331	other
CL2001032128AA (testset)	NORMAL	0.90013	0.09987	NORMAL
CL2001032129AA (testset)	other	3e-05	0.99997	other
CL2001032130AA	other	1e-05	0.99999	other
CL2001032132AA	other	0.0139	0.9861	other
CL2001032134AA (testset)	other	0.00177	0.99823	other
CL2001032135AA	other	0.00507	0.99493	other
CL2001032136AA (testset)	other	0.01605	0.98395	other
CL2001032138AA (testset)	other	0.00474	0.99526	other
CL2001032141AA (testset)	other	0.00763	0.99237	other
CL2001032142AA	other	0.00562	0.99438	other
CL2001032144AA	other	0.00602	0.99398	other
CL2001032145AA	other	0.15893	0.84107	other
CL2001032147AA	NORMAL	0.71116	0.28884	NORMAL
CL2001032149AA (testset)	other	0.03371	0.96629	other
CL2001032151AA	other	0.02419	0.97581	other
CL2001032152AA	other	0.29521	0.70479	other
CL2001032153AA	other	0.00543	0.99457	other
CL2001032155AA	other	0.03003	0.96997	other
CL2001032156AA (testset)	other	0.04469	0.95531	other
CL2001032202AA (testset)	NORMAL	0.82366	0.17634	NORMAL
CL2001032206AA	NORMAL	0.88057	0.11943	NORMAL
CL2001032207AA	other	4e-05	0.99996	other
CL2001032209AA	other	2e-05	0.99998	other
CL2001032210AA	other	0.02474	0.97526	other
CL2001032211AA (testset)	other	0.00018	0.99982	other
CL2001032212AA	other	0.01946	0.98054	other
CL2001032213AA	other	0.24991	0.75009	other
CL2001032214AA (testset)	other	0.09486	0.90514	other
CL2001032217AA (testset)	other	0.00023	0.99977	other
CL2001032218AA	other	0.00084	0.99916	other
CL2001032219AA (testset)	other	0.02939	0.97061	other
CL2001032220AA	NORMAL	0.96403	0.03597	NORMAL
CL2001032222AA (testset)	other	2e-05	0.99998	other
CL2001032229AA (testset)	other	0.06537	0.93463	other
CL2001032231AA	other	0.01817	0.98183	other
CL2001032232AA	other	0.0021	0.9979	other
CL2001032233AA (testset)	other	0.00017	0.99983	other
CL2001032238AA	other	0.01559	0.98441	other
CL2001032239AA	other	2e-05	0.99998	other
CL2001032240AA	other	0.00045	0.99955	other
CL2001032241AA (testset)	other	0.01824	0.98176	other
CL2001032242AA	other	7e-05	0.99993	other
CL2001032243AA	other	0.00188	0.99812	other
CL2001032248AA	other	0.00036	0.99964	other
CL2001032249AA (testset)	other	0.01296	0.98704	other
CL2001032252AA (testset)	other	1e-05	0.99999	other
CL2001032254AA (testset)	other	0.002	0.998	other
CL2001032255AA	other	5e-05	0.99995	other
CL2001032256AA (testset)	NORMAL	0.06787	0.93213	other
CL2001032259AA (testset)	other	0.01222	0.98778	other
CL2001032260AA	other	0.01419	0.98581	other
CL2001032301AA	other	0.08337	0.91663	other
CL2001032304AA	NORMAL	0.30463	0.69537	other
CL2001032305AA (testset)	other	0.00467	0.99533	other
CL2001032306AA (testset)	other	0.03056	0.96944	other
CL2001032307AA (testset)	other	0.12537	0.87463	other
CL2001032308AA	other	0.00504	0.99496	other
CL2001032309AA	other	0.0187	0.9813	other
CL2001032310AA	other	0.00338	0.99662	other
CL2001032311AA (testset)	other	9e-05	0.99991	other
CL2001032312AA	other	0.02099	0.97901	other
CL2001032313AA (testset)	other	0.00335	0.99665	other
CL2001032314AA (testset)	other	0.02231	0.97769	other
CL2001032316AA	other	0.00018	0.99982	other
CL2001032601AA	other	0.01146	0.98854	other
CL2001032602AA	other	0.17714	0.82286	other
CL2001032604AA	other	0.02393	0.97607	other
CL2001032607AA	other	0.04221	0.95779	other
CL2001032608AA	other	0.00087	0.99913	other
CL2001032610AA	other	0.01629	0.98371	other
CL2001032612AA	other	0.18959	0.81041	other
CL2001032613AA (testset)	other	0.02079	0.97921	other
CL2001032614AA	other	0.00186	0.99814	other
CL2001032616AA	other	0.03338	0.96662	other
CL2001032617AA (testset)	other	0.00397	0.99603	other
CL2001032620AA (testset)	other	0.01666	0.98334	other
CL2001032625AA	other	0.02851	0.97149	other
CL2001032627AA	other	0.00022	0.99978	other
CL2001032628AA	other	0.02592	0.97408	other
CL2001032629AA	other	0.17648	0.82352	other
CL2001032630AA (testset)	other	0.00676	0.99324	other
CL2001032632AA	other	0.00069	0.99931	other
CL2001032638AA	other	0.0031	0.9969	other
CL2001032640AA (testset)	other	0.06182	0.93818	other
CL2001032643AA	other	0.00071	0.99929	other
CL2001032644AA (testset)	other	0.00219	0.99781	other
CL2001032647AA	other	0.02945	0.97055	other
CL2001032701AA	other	0.04411	0.95589	other
CL2001032702AA	other	0.00296	0.99704	other
CL2001032703AA	other	0.00049	0.99951	other
CL2001032704AA	other	0.00314	0.99686	other
CL2001032706AA (testset)	other	0.01043	0.98957	other
CL2001032709AA	other	0.00143	0.99857	other
CL2001032716AA	other	0.18314	0.81686	other
CL2001032717AA	other	0.00799	0.99201	other
CL2001032718AA (testset)	NORMAL	0.93643	0.06357	NORMAL
CL2001032719AA	other	0.00049	0.99951	other
CL2001032720AA	other	0.00047	0.99953	other
CL2001032722AA	other	0.01688	0.98312	other
CL2001032724AA	NORMAL	0.43324	0.56676	other
CL2001032725AA	NORMAL	0.71003	0.28997	NORMAL
CL2001032727AA	NORMAL	0.97517	0.02483	NORMAL
CL2001032729AA	other	0.0026	0.9974	other
CL2001032730AA (testset)	other	0.02413	0.97587	other
CL2001032732AA (testset)	other	1e-04	0.9999	other
CL2001032733AA	other	0.01171	0.98829	other
CL2001032738AA (testset)	other	0.00032	0.99968	other
CL2001032742AA (testset)	other	0.00027	0.99973	other
CL2001032746AA	other	0.00524	0.99476	other
CL2001032747AA	other	0.0216	0.9784	other
CL2001032833AA	other	0.02732	0.97268	other
CL2001032836AA (testset)	other	3e-05	0.99997	other
CL2001032838AA (testset)	other	0.00792	0.99208	other
CL2001032839AA	other	0.05321	0.94679	other
CL2001032841AA	other	0.00614	0.99386	other
CL2001032842AA	other	6e-04	0.9994	other
CL2001032843AA (testset)	other	0.00038	0.99962	other
CL2001032845AA (testset)	other	0.00085	0.99915	other
CL2001032846AA	other	0.29123	0.70877	other
CL2001032847AA	other	0.24866	0.75134	other
CL2001032848AA	other	0.55359	0.44641	NORMAL
CL2001032850AA	other	0.02651	0.97349	other
CL2001032853AA	other	0.00014	0.99986	other
CL2001032854AA (testset)	other	0.05228	0.94772	other
CL2001032856AA	other	0.02094	0.97906	other
CL2001032857AA	other	0.00162	0.99838	other
CL2001032860AA (testset)	other	0.61008	0.38992	NORMAL
CL2001040305AA	other	0.00553	0.99447	other
CL2001040306AA	other	0.04788	0.95212	other
CL2001041708AA	other	0.00068	0.99932	other
CL2001041711AA	other	0.06763	0.93237	other
CL2001041716AA	other	0.13278	0.86722	other
CL2001042501AA (testset)	other	0.1847	0.8153	other
CL2001042505AA	other	0.0057	0.9943	other
CL2001042506AA (testset)	other	0.6204	0.3796	NORMAL