GO:0006139

GO:0006139

nucleobase, nucleoside, nucleotide and nucleic acid metabolism (annotated genes)

Biological Process

Parent node

GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolism

This leaf node contains 25 genes

The following 25 of these are used in classification:

	Symbol	Genename	NORMAL score	other score
40607_at	DPYSL2	dihydropyrimidinase-like 2	1.5416	-0.1368
36233_at	PAPSS2	3'-phosphoadenosine 5'-phosphosulfate synthase 2	0.8252	-0.0732
34411_at	PAPSS1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	0.5475	-0.0486
38811_at	ATIC	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	-0.4274	0.0379
39079_at	ERH	enhancer of rudimentary homolog (Drosophila)	-0.3959	0.0351
32331_at	AK3	adenylate kinase 3	-0.3419	0.0303
430_at	NP	nucleoside phosphorylase	0.3054	-0.0271
38412_at	ZNRD1	zinc ribbon domain containing, 1	0.2779	-0.0247
36149_at	DPYSL3	dihydropyrimidinase-like 3	0.277	-0.0246
40272_at	CRMP1	collapsin response mediator protein 1	-0.2586	0.0229
32441_at	CTPS	CTP synthase	-0.2398	0.0213
886_at	DCK	deoxycytidine kinase	-0.2388	0.0212
37335_at	DGUOK	deoxyguanosine kinase	-0.2151	0.0191
38388_at	OAS1	2',5'-oligoadenylate synthetase 1, 40/46kDa	-0.1882	0.0167
32810_at	TPMT	thiopurine S-methyltransferase	0.1567	-0.0139
39661_s_at	SLC29A2	solute carrier family 29 (nucleoside transporters), member 2	-0.1287	0.0114
1117_at	CDA	cytidine deaminase	-0.1234	0.0109
36923_at	FPGS	folylpolyglutamate synthase	0.1117	-0.0099
144_at	TK2	thymidine kinase 2, mitochondrial	0.1084	-0.0096
38389_at	OAS1	2',5'-oligoadenylate synthetase 1, 40/46kDa	-0.1064	0.0094
34985_at	CILP	cartilage intermediate layer protein, nucleotide pyrophosphohydrolase	-0.0898	0.008
41422_at	DPYS	dihydropyrimidinase	0.0711	-0.0063
34057_at	SLC28A2	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	-0.0446	0.004
38150_at	MTAP	methylthioadenosine phosphorylase	-0.0359	0.0032
35037_at	SLC28A1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	0.021	-0.0019

Performance on training data

• Error rate: 0.04444
• Performance: 0.1786
• Redundancy: 3.47672

	Sensitivity	Specificity
NORMAL	0.54545	0.99194
other	0.99194	0.54545

Performance on test data

• Error rate: 0.05882
• Performance: 0.21036
• Redundancy: 3.40718

	Sensitivity	Specificity
NORMAL	0.33333	1
other	1	0.33333

Predictions

	Class	NORMAL	other	Predictionn
CL2001031606AA	other	0.00099	0.99901	other
CL2001031607AA	other	0.01046	0.98954	other
CL2001031608AA	other	0.01283	0.98717	other
CL2001031609AA	other	0.03647	0.96353	other
CL2001031611AA	other	0.03512	0.96488	other
CL2001031612AA	other	0.01158	0.98842	other
CL2001031613AA	other	0.15992	0.84008	other
CL2001031615AA	other	0.00167	0.99833	other
CL2001031616AA (testset)	other	0.01405	0.98595	other
CL2001031618AA	other	0.00214	0.99786	other
CL2001031620AA (testset)	other	0.00642	0.99358	other
CL2001031621AA (testset)	other	0.00205	0.99795	other
CL2001031622AA	other	0.00397	0.99603	other
CL2001031625AA	other	0.00473	0.99527	other
CL2001031627AA (testset)	other	0.00207	0.99793	other
CL2001031628AA (testset)	other	0.01245	0.98755	other
CL2001031629AA	other	0.00044	0.99956	other
CL2001031630AA (testset)	other	0.00193	0.99807	other
CL2001031631AA	other	0.008	0.992	other
CL2001031632AA	other	0.00407	0.99593	other
CL2001031634AA	other	0.00055	0.99945	other
CL2001031635AA	other	0.00217	0.99783	other
CL2001031636AA	other	0.00045	0.99955	other
CL2001032002AA	other	0.00241	0.99759	other
CL2001032005AA	other	0.00362	0.99638	other
CL2001032008AA	other	0.00108	0.99892	other
CL2001032009AA (testset)	other	0.01034	0.98966	other
CL2001032010AA (testset)	NORMAL	0.28008	0.71992	other
CL2001032011AA (testset)	other	0.02343	0.97657	other
CL2001032012AA (testset)	other	0.00995	0.99005	other
CL2001032013AA (testset)	other	0.00839	0.99161	other
CL2001032015AA	other	0.04816	0.95184	other
CL2001032016AA (testset)	other	0.00223	0.99777	other
CL2001032019AA	other	0.01248	0.98752	other
CL2001032020AA (testset)	other	0.02137	0.97863	other
CL2001032025AA	other	0.01957	0.98043	other
CL2001032026AA	other	0.00357	0.99643	other
CL2001032027AA	other	0.02132	0.97868	other
CL2001032030AA	other	0.0066	0.9934	other
CL2001032031AA (testset)	other	0.05001	0.94999	other
CL2001032032AA	other	0.00997	0.99003	other
CL2001032034AA	other	0.25791	0.74209	other
CL2001032036AA	other	0.00668	0.99332	other
CL2001032041AA	NORMAL	0.63691	0.36309	NORMAL
CL2001032043AA	NORMAL	0.84404	0.15596	NORMAL
CL2001032044AA	other	0.12594	0.87406	other
CL2001032045AA (testset)	NORMAL	0.41777	0.58223	other
CL2001032046AA	NORMAL	0.34289	0.65711	other
CL2001032101AA	other	0.18306	0.81694	other
CL2001032102AA	NORMAL	0.67866	0.32134	NORMAL
CL2001032103AA	other	0.00194	0.99806	other
CL2001032104AA	other	0.00037	0.99963	other
CL2001032105AA	other	0.00032	0.99968	other
CL2001032107AA	other	0.00198	0.99802	other
CL2001032108AA	other	0.00793	0.99207	other
CL2001032109AA (testset)	other	0.02596	0.97404	other
CL2001032110AA	other	0.02061	0.97939	other
CL2001032111AA	other	0.00572	0.99428	other
CL2001032113AA (testset)	other	0.04425	0.95575	other
CL2001032114AA	other	0.00543	0.99457	other
CL2001032115AA (testset)	other	0.00326	0.99674	other
CL2001032116AA (testset)	other	0.01573	0.98427	other
CL2001032117AA	other	0.05143	0.94857	other
CL2001032121AA	other	0.00468	0.99532	other
CL2001032122AA	other	0.00127	0.99873	other
CL2001032124AA	other	0.15721	0.84279	other
CL2001032125AA	other	0.0086	0.9914	other
CL2001032127AA (testset)	other	0.02199	0.97801	other
CL2001032128AA (testset)	NORMAL	0.6233	0.3767	NORMAL
CL2001032129AA (testset)	other	0.0014	0.9986	other
CL2001032130AA	other	0.00191	0.99809	other
CL2001032132AA	other	0.02601	0.97399	other
CL2001032134AA (testset)	other	0.04756	0.95244	other
CL2001032135AA	other	0.10084	0.89916	other
CL2001032136AA (testset)	other	0.00602	0.99398	other
CL2001032138AA (testset)	other	0.01074	0.98926	other
CL2001032141AA (testset)	other	0.00468	0.99532	other
CL2001032142AA	other	0.0013	0.9987	other
CL2001032144AA	other	0.00034	0.99966	other
CL2001032145AA	other	0.00624	0.99376	other
CL2001032147AA	NORMAL	0.90921	0.09079	NORMAL
CL2001032149AA (testset)	other	0.11861	0.88139	other
CL2001032151AA	other	0.02753	0.97247	other
CL2001032152AA	other	0.00309	0.99691	other
CL2001032153AA	other	0.00447	0.99553	other
CL2001032155AA	other	0.28457	0.71543	other
CL2001032156AA (testset)	other	0.00732	0.99268	other
CL2001032202AA (testset)	NORMAL	0.63511	0.36489	NORMAL
CL2001032206AA	NORMAL	0.67119	0.32881	NORMAL
CL2001032207AA	other	0.00462	0.99538	other
CL2001032209AA	other	0.00129	0.99871	other
CL2001032210AA	other	0.01469	0.98531	other
CL2001032211AA (testset)	other	0.0012	0.9988	other
CL2001032212AA	other	0.00248	0.99752	other
CL2001032213AA	other	0.16129	0.83871	other
CL2001032214AA (testset)	other	0.26923	0.73077	other
CL2001032217AA (testset)	other	0.00433	0.99567	other
CL2001032218AA	other	0.00615	0.99385	other
CL2001032219AA (testset)	other	0.03986	0.96014	other
CL2001032220AA	NORMAL	0.34271	0.65729	other
CL2001032222AA (testset)	other	0.00054	0.99946	other
CL2001032229AA (testset)	other	0.01248	0.98752	other
CL2001032231AA	other	0.01928	0.98072	other
CL2001032232AA	other	0.01162	0.98838	other
CL2001032233AA (testset)	other	0.00101	0.99899	other
CL2001032238AA	other	0.00444	0.99556	other
CL2001032239AA	other	0.01738	0.98262	other
CL2001032240AA	other	0.00098	0.99902	other
CL2001032241AA (testset)	other	0.01294	0.98706	other
CL2001032242AA	other	0.00485	0.99515	other
CL2001032243AA	other	0.00641	0.99359	other
CL2001032248AA	other	0.00026	0.99974	other
CL2001032249AA (testset)	other	0.01046	0.98954	other
CL2001032252AA (testset)	other	0.00304	0.99696	other
CL2001032254AA (testset)	other	0.00499	0.99501	other
CL2001032255AA	other	0.00022	0.99978	other
CL2001032256AA (testset)	NORMAL	0.17041	0.82959	other
CL2001032259AA (testset)	other	0.00619	0.99381	other
CL2001032260AA	other	0.00181	0.99819	other
CL2001032301AA	other	0.02806	0.97194	other
CL2001032304AA	NORMAL	0.49967	0.50033	other
CL2001032305AA (testset)	other	0.00243	0.99757	other
CL2001032306AA (testset)	other	0.03632	0.96368	other
CL2001032307AA (testset)	other	0.11638	0.88362	other
CL2001032308AA	other	0.00246	0.99754	other
CL2001032309AA	other	0.00652	0.99348	other
CL2001032310AA	other	0.00091	0.99909	other
CL2001032311AA (testset)	other	0.0013	0.9987	other
CL2001032312AA	other	0.00527	0.99473	other
CL2001032313AA (testset)	other	0.00467	0.99533	other
CL2001032314AA (testset)	other	0.00022	0.99978	other
CL2001032316AA	other	0.00052	0.99948	other
CL2001032601AA	other	0.0023	0.9977	other
CL2001032602AA	other	0.00161	0.99839	other
CL2001032604AA	other	0.01722	0.98278	other
CL2001032607AA	other	0.01082	0.98918	other
CL2001032608AA	other	0.00433	0.99567	other
CL2001032610AA	other	0.00457	0.99543	other
CL2001032612AA	other	0.00389	0.99611	other
CL2001032613AA (testset)	other	0.00184	0.99816	other
CL2001032614AA	other	0.00149	0.99851	other
CL2001032616AA	other	0.00625	0.99375	other
CL2001032617AA (testset)	other	0.00757	0.99243	other
CL2001032620AA (testset)	other	0.00692	0.99308	other
CL2001032625AA	other	0.00587	0.99413	other
CL2001032627AA	other	0.00127	0.99873	other
CL2001032628AA	other	0.00985	0.99015	other
CL2001032629AA	other	0.01226	0.98774	other
CL2001032630AA (testset)	other	0.0355	0.9645	other
CL2001032632AA	other	0.00346	0.99654	other
CL2001032638AA	other	0.00494	0.99506	other
CL2001032640AA (testset)	other	0.00203	0.99797	other
CL2001032643AA	other	0.00609	0.99391	other
CL2001032644AA (testset)	other	0.0015	0.9985	other
CL2001032647AA	other	0.0163	0.9837	other
CL2001032701AA	other	0.00211	0.99789	other
CL2001032702AA	other	0.04003	0.95997	other
CL2001032703AA	other	0.00856	0.99144	other
CL2001032704AA	other	0.06454	0.93546	other
CL2001032706AA (testset)	other	0.04947	0.95053	other
CL2001032709AA	other	0.01762	0.98238	other
CL2001032716AA	other	0.03463	0.96537	other
CL2001032717AA	other	0.00099	0.99901	other
CL2001032718AA (testset)	NORMAL	0.23597	0.76403	other
CL2001032719AA	other	0.00642	0.99358	other
CL2001032720AA	other	0.00016	0.99984	other
CL2001032722AA	other	0.09671	0.90329	other
CL2001032724AA	NORMAL	0.15586	0.84414	other
CL2001032725AA	NORMAL	0.2582	0.7418	other
CL2001032727AA	NORMAL	0.56993	0.43007	NORMAL
CL2001032729AA	other	0.00242	0.99758	other
CL2001032730AA (testset)	other	0.00056	0.99944	other
CL2001032732AA (testset)	other	0.00126	0.99874	other
CL2001032733AA	other	0.00491	0.99509	other
CL2001032738AA (testset)	other	0.00128	0.99872	other
CL2001032742AA (testset)	other	0.00154	0.99846	other
CL2001032746AA	other	0.01776	0.98224	other
CL2001032747AA	other	0.00264	0.99736	other
CL2001032833AA	other	0.00126	0.99874	other
CL2001032836AA (testset)	other	0.002	0.998	other
CL2001032838AA (testset)	other	0.06455	0.93545	other
CL2001032839AA	other	0.0077	0.9923	other
CL2001032841AA	other	0.01528	0.98472	other
CL2001032842AA	other	0.01071	0.98929	other
CL2001032843AA (testset)	other	0.00193	0.99807	other
CL2001032845AA (testset)	other	0.01119	0.98881	other
CL2001032846AA	other	0.00625	0.99375	other
CL2001032847AA	other	0.03942	0.96058	other
CL2001032848AA	other	0.67486	0.32514	NORMAL
CL2001032850AA	other	0.04163	0.95837	other
CL2001032853AA	other	0.00233	0.99767	other
CL2001032854AA (testset)	other	0.00432	0.99568	other
CL2001032856AA	other	0.03503	0.96497	other
CL2001032857AA	other	0.00393	0.99607	other
CL2001032860AA (testset)	other	0.01606	0.98394	other
CL2001040305AA	other	0.00033	0.99967	other
CL2001040306AA	other	0.00843	0.99157	other
CL2001041708AA	other	0.00702	0.99298	other
CL2001041711AA	other	0.00318	0.99682	other
CL2001041716AA	other	0.01555	0.98445	other
CL2001042501AA (testset)	other	0.01162	0.98838	other
CL2001042505AA	other	0.00087	0.99913	other
CL2001042506AA (testset)	other	0.04502	0.95498	other