GO:0006470


GO:0006470

protein amino acid dephosphorylation
(annotated genes)

Biological
Process

Parent nodes

This leaf node contains 140 genes

The following 99 of these are used in classification:

 SymbolGenenameCARCINOID scoreother score
917_g_atPTPRN protein tyrosine phosphatase, receptor type, N3.7468-0.4095
36160_s_atPTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 23.0558-0.334
916_atPTPRN protein tyrosine phosphatase, receptor type, N2.0964-0.2291
1562_g_atDUSP8 dual specificity phosphatase 81.3942-0.1524
1463_atPTPN12 protein tyrosine phosphatase, non-receptor type 12-1.10720.121
40518_atPTPRC protein tyrosine phosphatase, receptor type, C-1.06420.1163
32157_atPPP1CA protein phosphatase 1, catalytic subunit, alpha isoform-0.94910.1037
33218_atERBB2 v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)-0.92840.1015
1802_s_atERBB2 v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)-0.86360.0944
1811_atPTPRH protein tyrosine phosphatase, receptor type, H0.8333-0.0911
1496_atPTPRA protein tyrosine phosphatase, receptor type, A0.8065-0.0881
41193_atDUSP6 dual specificity phosphatase 6-0.7550.0825
40520_g_atPTPRC protein tyrosine phosphatase, receptor type, C-0.6990.0764
1488_atPTPRK protein tyrosine phosphatase, receptor type, K-0.68240.0746
1561_atDUSP8 dual specificity phosphatase 80.6692-0.0731
1901_s_atERBB2 v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)-0.65790.0719
40519_atPTPRC protein tyrosine phosphatase, receptor type, C-0.64290.0703
1150_atPTPRE protein tyrosine phosphatase, receptor type, E-0.6380.0697
32916_atPTPRE protein tyrosine phosphatase, receptor type, E-0.62140.0679
922_atPPP2R1A protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform0.5967-0.0652
39780_atPPP3CB protein phosphatase 3 (formerly 2B), catalytic subunit, beta isoform (calcineurin A beta)0.5892-0.0644
1599_atCDKN3 cyclin-dependent kinase inhibitor 3 (CDK2-associated dual specificity phosphatase)-0.57370.0627
36808_atPTPN22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid)-0.55050.0602
529_atDUSP5 dual specificity phosphatase 5-0.52650.0575
794_atPTPN6 protein tyrosine phosphatase, non-receptor type 6-0.51770.0566
843_atPTP4A1 protein tyrosine phosphatase type IVA, member 1-0.5130.0561
31892_atPTPRM protein tyrosine phosphatase, receptor type, M-0.50790.0555
34198_atPTPN13 protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)-0.50410.0551
34654_atMTMR1 myotubularin related protein 1-0.50170.0548
391_atPPP5C protein phosphatase 5, catalytic subunit0.4625-0.0505
38277_atPPP3CB protein phosphatase 3 (formerly 2B), catalytic subunit, beta isoform (calcineurin A beta)0.4448-0.0486
40867_atPPP2R1A protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform0.4445-0.0486
33750_atPTPRU protein tyrosine phosphatase, receptor type, U-0.43390.0474
994_atPTPRM protein tyrosine phosphatase, receptor type, M-0.42960.047
995_g_atPTPRM protein tyrosine phosphatase, receptor type, M-0.42650.0466
1760_s_atPTPN7 protein tyrosine phosphatase, non-receptor type 7-0.40540.0443
37893_atPTPN2 protein tyrosine phosphatase, non-receptor type 2-0.37790.0413
392_g_atPPP5C protein phosphatase 5, catalytic subunit0.3757-0.0411
924_s_atPPP2CB protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform0.3691-0.0403
38272_atDUSP14 dual specificity phosphatase 14-0.36520.0399
1347_atCDC25B cell division cycle 25B-0.36160.0395
41162_atPPM1G protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform-0.36010.0394
39672_atPTPN7 protein tyrosine phosphatase, non-receptor type 7-0.3590.0392
1093_atPPP2R1B protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform0.3396-0.0371
1094_g_atPPP2R1B protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform0.332-0.0363
1629_s_atPTPN13 protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)-0.3310.0362
801_atPTPN14 protein tyrosine phosphatase, non-receptor type 14-0.32660.0357
39727_atDUSP11 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)-0.3210.0351
33413_atPTP4A1 protein tyrosine phosphatase type IVA, member 1-0.30340.0332
39227_atPTPRT protein tyrosine phosphatase, receptor type, T0.2981-0.0326
41429_atPPP2R1B protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform0.285-0.0312
37384_atPPM1F protein phosphatase 1F (PP2C domain containing)-0.28230.0309
40583_atPTPRJ protein tyrosine phosphatase, receptor type, J0.2754-0.0301
39835_atSBF1 SET binding factor 1-0.27090.0296
34082_atSSH1 slingshot 1-0.25710.0281
1005_atDUSP1 dual specificity phosphatase 1-0.25020.0273
32932_atDKFZP566K0524 DKFZP566K0524 protein0.2403-0.0263
39127_f_atPPP2R4 protein phosphatase 2A, regulatory subunit B' (PR 53)0.1752-0.0191
1383_atPPP2R2A protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform-0.1750.0191
31969_i_atPPEF2 protein phosphatase, EF hand calcium-binding domain 20.1648-0.018
39128_r_atPPP2R4 protein phosphatase 2A, regulatory subunit B' (PR 53)0.1607-0.0176
1320_atPTPN21 protein tyrosine phosphatase, non-receptor type 21-0.15850.0173
1788_s_atDUSP4 dual specificity phosphatase 40.1557-0.017
32289_atPTPRS protein tyrosine phosphatase, receptor type, S0.1547-0.0169
1584_atCDC25C cell division cycle 25C-0.15380.0168
1697_s_atPTPRJ protein tyrosine phosphatase, receptor type, J0.1488-0.0163
37777_atPTPRB protein tyrosine phosphatase, receptor type, B-0.13720.015
41167_atPPP2R2A protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform-0.13490.0147
40920_atCDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae)0.1307-0.0143
33453_atPTPN18 protein tyrosine phosphatase, non-receptor type 18 (brain-derived)0.1289-0.0141
1888_s_atKIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog-0.12860.0141
38415_atPTP4A2 protein tyrosine phosphatase type IVA, member 2-0.12150.0133
1264_atPTPN2 protein tyrosine phosphatase, non-receptor type 20.1211-0.0132
32141_atPPM1E protein phosphatase 1E (PP2C domain containing)0.1172-0.0128
39933_atDUSP7 dual specificity phosphatase 7-0.10930.0119
36920_atMTM1 myotubular myopathy 1-0.1090.0119
31970_r_atPPEF2 protein phosphatase, EF hand calcium-binding domain 20.0996-0.0109
39932_atDUSP7 dual specificity phosphatase 7-0.09780.0107
32665_atPPM1B protein phosphatase 1B (formerly 2C), magnesium-dependent, beta isoform0.0972-0.0106
34249_atEPM2A epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)0.097-0.0106
1292_atDUSP2 dual specificity phosphatase 2-0.09520.0104
1871_g_atPTPN11 protein tyrosine phosphatase, non-receptor type 11 (Noonan syndrome 1)0.0813-0.0089
33181_atPPP2CA protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform0.0742-0.0081
407_atPTPRB protein tyrosine phosphatase, receptor type, B-0.07410.0081
32199_atPTPRO protein tyrosine phosphatase, receptor type, O-0.06730.0074
40582_atPTPRJ protein tyrosine phosphatase, receptor type, J0.0656-0.0072
39824_atPTP4A3 protein tyrosine phosphatase type IVA, member 3-0.05410.0059
492_g_atPTPRG protein tyrosine phosphatase, receptor type, G0.0523-0.0057
38555_atDUSP10 dual specificity phosphatase 10-0.05220.0057
40524_atPTPN21 protein tyrosine phosphatase, non-receptor type 21-0.04670.0051
35211_atPPP2R3A protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha-0.03830.0042
1459_atPTPN4 protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)0.0363-0.004
31885_atPTPN3 protein tyrosine phosphatase, non-receptor type 30.0335-0.0037
281_s_atPPP3CA protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform (calcineurin A alpha)-0.03250.0035
39707_atMTMR4 myotubularin related protein 40.017-0.0019
1386_atPTPN9 protein tyrosine phosphatase, non-receptor type 9-0.0110.0012
36204_atPTPRF protein tyrosine phosphatase, receptor type, F-0.00970.0011
38946_atPPEF1 protein phosphatase, EF hand calcium-binding domain 10.0022-2e-04
1443_atDUSP9 dual specificity phosphatase 900

Performance on training data

 SensitivitySpecificity
CARCINOID11
other11

Performance on test data

 SensitivitySpecificity
CARCINOID11
other11

Predictions

 ClassCARCINOIDotherPredictionn
CL2001031606AA (testset)other01 other
CL2001031607AA (testset)other01 other
CL2001031608AA (testset)other01 other
CL2001031609AA (testset)CARCINOID10 CARCINOID
CL2001031611AA (testset)other01 other
CL2001031612AA (testset)other01 other
CL2001031613AA (testset)other01 other
CL2001031615AA (testset)other01 other
CL2001031616AA (testset)other01 other
CL2001031618AA (testset)other01 other
CL2001031620AA (testset)other01 other
CL2001031621AA (testset)other01 other
CL2001031622AA (testset)other01 other
CL2001031625AA (testset)other01 other
CL2001031627AA (testset)other01 other
CL2001031628AA (testset)other01 other
CL2001031629AA (testset)other01 other
CL2001031630AA (testset)other01 other
CL2001031631AA (testset)other01 other
CL2001031632AA (testset)other01 other
CL2001031634AA (testset)other01 other
CL2001031635AA (testset)other01 other
CL2001031636AA (testset)other01 other
CL2001032002AA (testset)other01 other
CL2001032005AA (testset)other1e-050.99999 other
CL2001032008AA (testset)other01 other
CL2001032009AA (testset)other01 other
CL2001032010AA (testset)other01 other
CL2001032011AA (testset)other01 other
CL2001032012AA (testset)other01 other
CL2001032013AA (testset)other01 other
CL2001032015AA (testset)other01 other
CL2001032016AA (testset)other01 other
CL2001032019AA (testset)other01 other
CL2001032020AA (testset)other01 other
CL2001032025AA (testset)other01 other
CL2001032026AA (testset)other01 other
CL2001032027AA (testset)other01 other
CL2001032030AA (testset)other01 other
CL2001032031AA (testset)other01 other
CL2001032032AA (testset)other01 other
CL2001032034AA (testset)other01 other
CL2001032036AA (testset)other01 other
CL2001032041AA (testset)other01 other
CL2001032043AA (testset)other01 other
CL2001032044AA (testset)CARCINOID10 CARCINOID
CL2001032045AA (testset)other01 other
CL2001032046AA (testset)other01 other
CL2001032101AA (testset)CARCINOID10 CARCINOID
CL2001032102AA (testset)other01 other
CL2001032103AA (testset)other01 other
CL2001032104AA (testset)other01 other
CL2001032105AA (testset)other01 other
CL2001032107AA (testset)other01 other
CL2001032108AA (testset)other01 other
CL2001032109AA (testset)other01 other
CL2001032110AA (testset)other01 other
CL2001032111AA (testset)other01 other
CL2001032113AA (testset)other0.000410.99959 other
CL2001032114AA (testset)other01 other
CL2001032115AA (testset)other01 other
CL2001032116AA (testset)other01 other
CL2001032117AA (testset)other01 other
CL2001032121AA (testset)other3e-050.99997 other
CL2001032122AA (testset)other01 other
CL2001032124AA (testset)CARCINOID10 CARCINOID
CL2001032125AA (testset)other01 other
CL2001032127AA (testset)CARCINOID10 CARCINOID
CL2001032128AA (testset)other01 other
CL2001032129AA (testset)other01 other
CL2001032130AA (testset)other01 other
CL2001032132AA (testset)other01 other
CL2001032134AA (testset)other01 other
CL2001032135AA (testset)other01 other
CL2001032136AA (testset)other01 other
CL2001032138AA (testset)other01 other
CL2001032141AA (testset)other01 other
CL2001032142AA (testset)other01 other
CL2001032144AA (testset)other01 other
CL2001032145AA (testset)CARCINOID10 CARCINOID
CL2001032147AA (testset)other01 other
CL2001032149AA (testset)other01 other
CL2001032151AA (testset)CARCINOID10 CARCINOID
CL2001032152AA (testset)CARCINOID10 CARCINOID
CL2001032153AA (testset)other01 other
CL2001032155AA (testset)other01 other
CL2001032156AA (testset)other01 other
CL2001032202AA (testset)other01 other
CL2001032206AA (testset)other01 other
CL2001032207AA (testset)other01 other
CL2001032209AA (testset)other01 other
CL2001032210AA (testset)CARCINOID10 CARCINOID
CL2001032211AA (testset)other01 other
CL2001032212AA (testset)other01 other
CL2001032213AA (testset)other01 other
CL2001032214AA (testset)other01 other
CL2001032217AA (testset)other0.000190.99981 other
CL2001032218AA (testset)other01 other
CL2001032219AA (testset)CARCINOID10 CARCINOID
CL2001032220AA (testset)other01 other
CL2001032222AA (testset)other01 other
CL2001032229AA (testset)other01 other
CL2001032231AA (testset)other01 other
CL2001032232AA (testset)other01 other
CL2001032233AA (testset)other01 other
CL2001032238AA (testset)CARCINOID10 CARCINOID
CL2001032239AA (testset)other01 other
CL2001032240AA (testset)other01 other
CL2001032241AA (testset)other01 other
CL2001032242AA (testset)other01 other
CL2001032243AA (testset)other01 other
CL2001032248AA (testset)other01 other
CL2001032249AA (testset)other01 other
CL2001032252AA (testset)other01 other
CL2001032254AA (testset)other01 other
CL2001032255AA (testset)other01 other
CL2001032256AA (testset)other01 other
CL2001032259AA (testset)other01 other
CL2001032260AA (testset)other0.032470.96753 other
CL2001032301AA (testset)other01 other
CL2001032304AA (testset)other01 other
CL2001032305AA (testset)other01 other
CL2001032306AA (testset)other01 other
CL2001032307AA (testset)other01 other
CL2001032308AA (testset)other01 other
CL2001032309AA (testset)other01 other
CL2001032310AA (testset)other01 other
CL2001032311AA (testset)other01 other
CL2001032312AA (testset)other01 other
CL2001032313AA (testset)other01 other
CL2001032314AA (testset)other01 other
CL2001032316AA (testset)other01 other
CL2001032601AA (testset)other01 other
CL2001032602AA (testset)other01 other
CL2001032604AA (testset)other01 other
CL2001032607AA (testset)CARCINOID10 CARCINOID
CL2001032608AA (testset)other01 other
CL2001032610AA (testset)other01 other
CL2001032612AA (testset)other01 other
CL2001032613AA (testset)other01 other
CL2001032614AA (testset)other01 other
CL2001032616AA (testset)other01 other
CL2001032617AA (testset)other01 other
CL2001032620AA (testset)other01 other
CL2001032625AA (testset)other01 other
CL2001032627AA (testset)other01 other
CL2001032628AA (testset)other01 other
CL2001032629AA (testset)CARCINOID10 CARCINOID
CL2001032630AA (testset)CARCINOID10 CARCINOID
CL2001032632AA (testset)other01 other
CL2001032638AA (testset)other01 other
CL2001032640AA (testset)other01 other
CL2001032643AA (testset)other01 other
CL2001032644AA (testset)other01 other
CL2001032647AA (testset)other01 other
CL2001032701AA (testset)other01 other
CL2001032702AA (testset)other01 other
CL2001032703AA (testset)other01 other
CL2001032704AA (testset)other01 other
CL2001032706AA (testset)other01 other
CL2001032709AA (testset)other01 other
CL2001032716AA (testset)other01 other
CL2001032717AA (testset)other01 other
CL2001032718AA (testset)other01 other
CL2001032719AA (testset)other01 other
CL2001032720AA (testset)other01 other
CL2001032722AA (testset)CARCINOID10 CARCINOID
CL2001032724AA (testset)other01 other
CL2001032725AA (testset)other01 other
CL2001032727AA (testset)other01 other
CL2001032729AA (testset)other01 other
CL2001032730AA (testset)other01 other
CL2001032732AA (testset)other01 other
CL2001032733AA (testset)other01 other
CL2001032738AA (testset)other01 other
CL2001032742AA (testset)other01 other
CL2001032746AA (testset)other01 other
CL2001032747AA (testset)other01 other
CL2001032833AA (testset)other01 other
CL2001032836AA (testset)other01 other
CL2001032838AA (testset)other01 other
CL2001032839AA (testset)other01 other
CL2001032841AA (testset)other01 other
CL2001032842AA (testset)other01 other
CL2001032843AA (testset)other01 other
CL2001032845AA (testset)other01 other
CL2001032846AA (testset)other01 other
CL2001032847AA (testset)CARCINOID10 CARCINOID
CL2001032848AA (testset)other01 other
CL2001032850AA (testset)CARCINOID10 CARCINOID
CL2001032853AA (testset)other01 other
CL2001032854AA (testset)CARCINOID0.999982e-05 CARCINOID
CL2001032856AA (testset)other01 other
CL2001032857AA (testset)other01 other
CL2001032860AA (testset)CARCINOID10 CARCINOID
CL2001040305AA (testset)other01 other
CL2001040306AA (testset)other01 other
CL2001041708AA (testset)other01 other
CL2001041711AA (testset)other01 other
CL2001041716AA (testset)other01 other
CL2001042501AA (testset)CARCINOID10 CARCINOID
CL2001042505AA (testset)other01 other
CL2001042506AA (testset)other01 other

 


Generated by StAM on Tue Sep 7 18:11:47 2004