GO:0000122 | negative regulation of transcription from Pol II promoter | Biological Process |
| GO:0006357 | regulation of transcription from Pol II promoter |
|---|---|
| GO:0045892 | negative regulation of transcription, DNA-dependent |
The following 60 of these are used in classification:
| Symbol | Genename | CARCINOID score | other score | |
|---|---|---|---|---|
| 41388_at | MEIS2 | Meis1, myeloid ecotropic viral integration site 1 homolog 2 (mouse) | 1.9951 | -0.218 |
| 2035_s_at | ENO1 | enolase 1, (alpha) | -1.7183 | 0.1878 |
| 39839_at | CSDA | cold shock domain protein A | -1.5794 | 0.1726 |
| 40091_at | BCL6 | B-cell CLL/lymphoma 6 (zinc finger protein 51) | -1.196 | 0.1307 |
| 37505_at | NR0B2 | nuclear receptor subfamily 0, group B, member 2 | 1.135 | -0.124 |
| 36412_s_at | IRF7 | interferon regulatory factor 7 | -1.0217 | 0.1117 |
| 38374_at | TIEG | TGFB inducible early growth response | -0.7711 | 0.0843 |
| 34355_at | MECP2 | methyl CpG binding protein 2 (Rett syndrome) | 0.7224 | -0.0789 |
| 38317_at | TCEAL1 | transcription elongation factor A (SII)-like 1 | 0.7108 | -0.0777 |
| 1341_at | SPI1 | spleen focus forming virus (SFFV) proviral integration oncogene spi1 | -0.6991 | 0.0764 |
| 38640_at | ZT86 | zinc finger protein | -0.6634 | 0.0725 |
| 33865_at | BS69 | adenovirus 5 E1A binding protein | 0.6586 | -0.072 |
| 643_at | NR0B2 | nuclear receptor subfamily 0, group B, member 2 | 0.6497 | -0.071 |
| 37333_at | DNMT1 | DNA (cytosine-5-)-methyltransferase 1 | -0.577 | 0.0631 |
| 274_at | ZNF148 | zinc finger protein 148 (pHZ-52) | 0.5304 | -0.058 |
| 38639_at | MXD4 | MAX dimerization protein 4 | 0.4704 | -0.0514 |
| 224_at | TIEG | TGFB inducible early growth response | -0.458 | 0.0501 |
| 40621_at | PAWR | PRKC, apoptosis, WT1, regulator | -0.4375 | 0.0478 |
| 33864_at | BS69 | adenovirus 5 E1A binding protein | 0.4365 | -0.0477 |
| 31779_s_at | PRDM1 | PR domain containing 1, with ZNF domain | -0.4361 | 0.0477 |
| 31906_at | HSBP1 | heat shock factor binding protein 1 | -0.4168 | 0.0455 |
| 35475_at | ZNF177 | zinc finger protein 177 | 0.3983 | -0.0435 |
| 2028_s_at | E2F1 | E2F transcription factor 1 | -0.396 | 0.0433 |
| 33873_at | TCFL1 | transcription factor-like 1 | -0.3883 | 0.0424 |
| 32941_at | ICSBP1 | interferon consensus sequence binding protein 1 | -0.3657 | 0.04 |
| 41466_s_at | ZNF148 | zinc finger protein 148 (pHZ-52) | 0.3535 | -0.0386 |
| 41465_at | ZNF148 | zinc finger protein 148 (pHZ-52) | 0.3219 | -0.0352 |
| 32621_at | DR1 | down-regulator of transcription 1, TBP-binding (negative cofactor 2) | -0.3166 | 0.0346 |
| 36669_at | FOSB | FBJ murine osteosarcoma viral oncogene homolog B | -0.261 | 0.0285 |
| 31823_at | CUTL1 | cut-like 1, CCAAT displacement protein (Drosophila) | -0.2538 | 0.0277 |
| 1900_at | RB1 | retinoblastoma 1 (including osteosarcoma) | 0.2311 | -0.0253 |
| 211_at | DR1 | down-regulator of transcription 1, TBP-binding (negative cofactor 2) | -0.2199 | 0.024 |
| 38288_at | SNAI2 | snail homolog 2 (Drosophila) | -0.1899 | 0.0208 |
| 33439_at | TCF8 | transcription factor 8 (represses interleukin 2 expression) | -0.1888 | 0.0206 |
| 31822_at | CUTL1 | cut-like 1, CCAAT displacement protein (Drosophila) | -0.1675 | 0.0183 |
| 1220_g_at | IRF2 | interferon regulatory factor 2 | -0.1569 | 0.0171 |
| 40944_at | TIEG2 | TGFB inducible early growth response 2 | -0.155 | 0.0169 |
| 35019_at | ZNF254 | zinc finger protein 254 | -0.1349 | 0.0147 |
| 33440_at | TCF8 | transcription factor 8 (represses interleukin 2 expression) | 0.1341 | -0.0147 |
| 35319_at | CTCF | CCCTC-binding factor (zinc finger protein) | -0.1274 | 0.0139 |
| 32267_at | ZNF345 | zinc finger protein 345 | 0.1197 | -0.0131 |
| 40328_at | TWIST1 | twist homolog 1 (acrocephalosyndactyly 3; Saethre-Chotzen syndrome) (Drosophila) | -0.1177 | 0.0129 |
| 32443_at | ZNF157 | zinc finger protein 157 (HZF22) | 0.1107 | -0.0121 |
| 1219_at | IRF2 | interferon regulatory factor 2 | -0.1098 | 0.012 |
| 34667_at | NFX1 | nuclear transcription factor, X-box binding 1 | -0.0788 | 0.0086 |
| 38603_at | ZNF136 | zinc finger protein 136 (clone pHZ-20) | 0.0778 | -0.0085 |
| 40871_at | VHL | von Hippel-Lindau syndrome | 0.0757 | -0.0083 |
| 1672_f_at | RB1 | retinoblastoma 1 (including osteosarcoma) | -0.0755 | 0.0083 |
| 34551_at | POU4F2 | POU domain, class 4, transcription factor 2 | 0.0732 | -0.008 |
| 1322_at | E2F1 | E2F transcription factor 1 | 0.0613 | -0.0067 |
| 1905_s_at | RB1 | retinoblastoma 1 (including osteosarcoma) | -0.058 | 0.0063 |
| 2044_s_at | RB1 | retinoblastoma 1 (including osteosarcoma) | -0.0568 | 0.0062 |
| 1571_f_at | RB1 | retinoblastoma 1 (including osteosarcoma) | 0.0536 | -0.0059 |
| 39943_at | ORC2L | origin recognition complex, subunit 2-like (yeast) | 0.0527 | -0.0058 |
| 978_at | BCL6 | B-cell CLL/lymphoma 6 (zinc finger protein 51) | 0.0444 | -0.0049 |
| 1668_s_at | VHL | von Hippel-Lindau syndrome | -0.0409 | 0.0045 |
| 36072_at | ZNF189 | zinc finger protein 189 | 0.0232 | -0.0025 |
| 40620_at | PAWR | PRKC, apoptosis, WT1, regulator | 0.0208 | -0.0023 |
| 1570_f_at | RB1 | retinoblastoma 1 (including osteosarcoma) | 0.0179 | -0.002 |
| 979_g_at | BCL6 | B-cell CLL/lymphoma 6 (zinc finger protein 51) | 0.0027 | -3e-04 |
| Sensitivity | Specificity | |
|---|---|---|
| CARCINOID | 1 | 1 |
| other | 1 | 1 |
| Sensitivity | Specificity | |
|---|---|---|
| CARCINOID | 1 | 1 |
| other | 1 | 1 |
| Class | CARCINOID | other | Predictionn | |
|---|---|---|---|---|
| CL2001031606AA (testset) | other | 0 | 1 | other |
| CL2001031607AA (testset) | other | 0 | 1 | other |
| CL2001031608AA (testset) | other | 0 | 1 | other |
| CL2001031609AA (testset) | CARCINOID | 1 | 0 | CARCINOID |
| CL2001031611AA (testset) | other | 0 | 1 | other |
| CL2001031612AA (testset) | other | 0 | 1 | other |
| CL2001031613AA (testset) | other | 0 | 1 | other |
| CL2001031615AA (testset) | other | 0 | 1 | other |
| CL2001031616AA (testset) | other | 0 | 1 | other |
| CL2001031618AA (testset) | other | 0.00035 | 0.99965 | other |
| CL2001031620AA (testset) | other | 0 | 1 | other |
| CL2001031621AA (testset) | other | 0 | 1 | other |
| CL2001031622AA (testset) | other | 0 | 1 | other |
| CL2001031625AA (testset) | other | 0 | 1 | other |
| CL2001031627AA (testset) | other | 0 | 1 | other |
| CL2001031628AA (testset) | other | 0 | 1 | other |
| CL2001031629AA (testset) | other | 0 | 1 | other |
| CL2001031630AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001031631AA (testset) | other | 0 | 1 | other |
| CL2001031632AA (testset) | other | 0 | 1 | other |
| CL2001031634AA (testset) | other | 0 | 1 | other |
| CL2001031635AA (testset) | other | 0 | 1 | other |
| CL2001031636AA (testset) | other | 0 | 1 | other |
| CL2001032002AA (testset) | other | 0.00206 | 0.99794 | other |
| CL2001032005AA (testset) | other | 0 | 1 | other |
| CL2001032008AA (testset) | other | 0 | 1 | other |
| CL2001032009AA (testset) | other | 0 | 1 | other |
| CL2001032010AA (testset) | other | 0 | 1 | other |
| CL2001032011AA (testset) | other | 0 | 1 | other |
| CL2001032012AA (testset) | other | 0 | 1 | other |
| CL2001032013AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001032015AA (testset) | other | 0 | 1 | other |
| CL2001032016AA (testset) | other | 0 | 1 | other |
| CL2001032019AA (testset) | other | 0 | 1 | other |
| CL2001032020AA (testset) | other | 0 | 1 | other |
| CL2001032025AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001032026AA (testset) | other | 0 | 1 | other |
| CL2001032027AA (testset) | other | 0 | 1 | other |
| CL2001032030AA (testset) | other | 0 | 1 | other |
| CL2001032031AA (testset) | other | 0 | 1 | other |
| CL2001032032AA (testset) | other | 2e-05 | 0.99998 | other |
| CL2001032034AA (testset) | other | 4e-05 | 0.99996 | other |
| CL2001032036AA (testset) | other | 0.22272 | 0.77728 | other |
| CL2001032041AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001032043AA (testset) | other | 0.00076 | 0.99924 | other |
| CL2001032044AA (testset) | CARCINOID | 0.99999 | 1e-05 | CARCINOID |
| CL2001032045AA (testset) | other | 0.00043 | 0.99957 | other |
| CL2001032046AA (testset) | other | 1e-04 | 0.9999 | other |
| CL2001032101AA (testset) | CARCINOID | 0.99914 | 0.00086 | CARCINOID |
| CL2001032102AA (testset) | other | 0 | 1 | other |
| CL2001032103AA (testset) | other | 0 | 1 | other |
| CL2001032104AA (testset) | other | 0 | 1 | other |
| CL2001032105AA (testset) | other | 0 | 1 | other |
| CL2001032107AA (testset) | other | 0 | 1 | other |
| CL2001032108AA (testset) | other | 0 | 1 | other |
| CL2001032109AA (testset) | other | 0.00349 | 0.99651 | other |
| CL2001032110AA (testset) | other | 0 | 1 | other |
| CL2001032111AA (testset) | other | 0 | 1 | other |
| CL2001032113AA (testset) | other | 0.00074 | 0.99926 | other |
| CL2001032114AA (testset) | other | 0 | 1 | other |
| CL2001032115AA (testset) | other | 0.01527 | 0.98473 | other |
| CL2001032116AA (testset) | other | 8e-05 | 0.99992 | other |
| CL2001032117AA (testset) | other | 0 | 1 | other |
| CL2001032121AA (testset) | other | 0.44516 | 0.55484 | other |
| CL2001032122AA (testset) | other | 0 | 1 | other |
| CL2001032124AA (testset) | CARCINOID | 0.99957 | 0.00043 | CARCINOID |
| CL2001032125AA (testset) | other | 0 | 1 | other |
| CL2001032127AA (testset) | CARCINOID | 1 | 0 | CARCINOID |
| CL2001032128AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001032129AA (testset) | other | 0 | 1 | other |
| CL2001032130AA (testset) | other | 0 | 1 | other |
| CL2001032132AA (testset) | other | 3e-05 | 0.99997 | other |
| CL2001032134AA (testset) | other | 0 | 1 | other |
| CL2001032135AA (testset) | other | 0 | 1 | other |
| CL2001032136AA (testset) | other | 0 | 1 | other |
| CL2001032138AA (testset) | other | 0 | 1 | other |
| CL2001032141AA (testset) | other | 0 | 1 | other |
| CL2001032142AA (testset) | other | 0 | 1 | other |
| CL2001032144AA (testset) | other | 0 | 1 | other |
| CL2001032145AA (testset) | CARCINOID | 0.99999 | 1e-05 | CARCINOID |
| CL2001032147AA (testset) | other | 0 | 1 | other |
| CL2001032149AA (testset) | other | 0 | 1 | other |
| CL2001032151AA (testset) | CARCINOID | 1 | 0 | CARCINOID |
| CL2001032152AA (testset) | CARCINOID | 1 | 0 | CARCINOID |
| CL2001032153AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001032155AA (testset) | other | 0 | 1 | other |
| CL2001032156AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001032202AA (testset) | other | 2e-05 | 0.99998 | other |
| CL2001032206AA (testset) | other | 0 | 1 | other |
| CL2001032207AA (testset) | other | 0 | 1 | other |
| CL2001032209AA (testset) | other | 0 | 1 | other |
| CL2001032210AA (testset) | CARCINOID | 1 | 0 | CARCINOID |
| CL2001032211AA (testset) | other | 0 | 1 | other |
| CL2001032212AA (testset) | other | 0.00043 | 0.99957 | other |
| CL2001032213AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001032214AA (testset) | other | 0 | 1 | other |
| CL2001032217AA (testset) | other | 0.02581 | 0.97419 | other |
| CL2001032218AA (testset) | other | 0 | 1 | other |
| CL2001032219AA (testset) | CARCINOID | 0.9748 | 0.0252 | CARCINOID |
| CL2001032220AA (testset) | other | 6e-05 | 0.99994 | other |
| CL2001032222AA (testset) | other | 0 | 1 | other |
| CL2001032229AA (testset) | other | 2e-05 | 0.99998 | other |
| CL2001032231AA (testset) | other | 0 | 1 | other |
| CL2001032232AA (testset) | other | 0 | 1 | other |
| CL2001032233AA (testset) | other | 0 | 1 | other |
| CL2001032238AA (testset) | CARCINOID | 0.99997 | 3e-05 | CARCINOID |
| CL2001032239AA (testset) | other | 0 | 1 | other |
| CL2001032240AA (testset) | other | 0 | 1 | other |
| CL2001032241AA (testset) | other | 0 | 1 | other |
| CL2001032242AA (testset) | other | 0 | 1 | other |
| CL2001032243AA (testset) | other | 0 | 1 | other |
| CL2001032248AA (testset) | other | 0 | 1 | other |
| CL2001032249AA (testset) | other | 0 | 1 | other |
| CL2001032252AA (testset) | other | 0 | 1 | other |
| CL2001032254AA (testset) | other | 0 | 1 | other |
| CL2001032255AA (testset) | other | 0 | 1 | other |
| CL2001032256AA (testset) | other | 0 | 1 | other |
| CL2001032259AA (testset) | other | 0 | 1 | other |
| CL2001032260AA (testset) | other | 0.01115 | 0.98885 | other |
| CL2001032301AA (testset) | other | 0 | 1 | other |
| CL2001032304AA (testset) | other | 0 | 1 | other |
| CL2001032305AA (testset) | other | 0 | 1 | other |
| CL2001032306AA (testset) | other | 0 | 1 | other |
| CL2001032307AA (testset) | other | 0 | 1 | other |
| CL2001032308AA (testset) | other | 0 | 1 | other |
| CL2001032309AA (testset) | other | 0 | 1 | other |
| CL2001032310AA (testset) | other | 0.00268 | 0.99732 | other |
| CL2001032311AA (testset) | other | 0 | 1 | other |
| CL2001032312AA (testset) | other | 0 | 1 | other |
| CL2001032313AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001032314AA (testset) | other | 2e-05 | 0.99998 | other |
| CL2001032316AA (testset) | other | 0 | 1 | other |
| CL2001032601AA (testset) | other | 0 | 1 | other |
| CL2001032602AA (testset) | other | 4e-05 | 0.99996 | other |
| CL2001032604AA (testset) | other | 0 | 1 | other |
| CL2001032607AA (testset) | CARCINOID | 1 | 0 | CARCINOID |
| CL2001032608AA (testset) | other | 0 | 1 | other |
| CL2001032610AA (testset) | other | 0 | 1 | other |
| CL2001032612AA (testset) | other | 0 | 1 | other |
| CL2001032613AA (testset) | other | 0 | 1 | other |
| CL2001032614AA (testset) | other | 0 | 1 | other |
| CL2001032616AA (testset) | other | 0.00065 | 0.99935 | other |
| CL2001032617AA (testset) | other | 0 | 1 | other |
| CL2001032620AA (testset) | other | 0 | 1 | other |
| CL2001032625AA (testset) | other | 6e-04 | 0.9994 | other |
| CL2001032627AA (testset) | other | 0 | 1 | other |
| CL2001032628AA (testset) | other | 0 | 1 | other |
| CL2001032629AA (testset) | CARCINOID | 1 | 0 | CARCINOID |
| CL2001032630AA (testset) | CARCINOID | 0.99305 | 0.00695 | CARCINOID |
| CL2001032632AA (testset) | other | 0.00513 | 0.99487 | other |
| CL2001032638AA (testset) | other | 0 | 1 | other |
| CL2001032640AA (testset) | other | 0 | 1 | other |
| CL2001032643AA (testset) | other | 0 | 1 | other |
| CL2001032644AA (testset) | other | 0 | 1 | other |
| CL2001032647AA (testset) | other | 0 | 1 | other |
| CL2001032701AA (testset) | other | 0 | 1 | other |
| CL2001032702AA (testset) | other | 0 | 1 | other |
| CL2001032703AA (testset) | other | 0 | 1 | other |
| CL2001032704AA (testset) | other | 0 | 1 | other |
| CL2001032706AA (testset) | other | 0 | 1 | other |
| CL2001032709AA (testset) | other | 0 | 1 | other |
| CL2001032716AA (testset) | other | 0 | 1 | other |
| CL2001032717AA (testset) | other | 4e-05 | 0.99996 | other |
| CL2001032718AA (testset) | other | 0.00036 | 0.99964 | other |
| CL2001032719AA (testset) | other | 0 | 1 | other |
| CL2001032720AA (testset) | other | 0.19802 | 0.80198 | other |
| CL2001032722AA (testset) | CARCINOID | 1 | 0 | CARCINOID |
| CL2001032724AA (testset) | other | 1e-04 | 0.9999 | other |
| CL2001032725AA (testset) | other | 0.01271 | 0.98729 | other |
| CL2001032727AA (testset) | other | 2e-05 | 0.99998 | other |
| CL2001032729AA (testset) | other | 0 | 1 | other |
| CL2001032730AA (testset) | other | 0 | 1 | other |
| CL2001032732AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001032733AA (testset) | other | 0 | 1 | other |
| CL2001032738AA (testset) | other | 0 | 1 | other |
| CL2001032742AA (testset) | other | 0 | 1 | other |
| CL2001032746AA (testset) | other | 0 | 1 | other |
| CL2001032747AA (testset) | other | 0 | 1 | other |
| CL2001032833AA (testset) | other | 4e-05 | 0.99996 | other |
| CL2001032836AA (testset) | other | 0 | 1 | other |
| CL2001032838AA (testset) | other | 0 | 1 | other |
| CL2001032839AA (testset) | other | 0 | 1 | other |
| CL2001032841AA (testset) | other | 0 | 1 | other |
| CL2001032842AA (testset) | other | 5e-05 | 0.99995 | other |
| CL2001032843AA (testset) | other | 0 | 1 | other |
| CL2001032845AA (testset) | other | 0.00018 | 0.99982 | other |
| CL2001032846AA (testset) | other | 0 | 1 | other |
| CL2001032847AA (testset) | CARCINOID | 0.99934 | 0.00066 | CARCINOID |
| CL2001032848AA (testset) | other | 0 | 1 | other |
| CL2001032850AA (testset) | CARCINOID | 1 | 0 | CARCINOID |
| CL2001032853AA (testset) | other | 0 | 1 | other |
| CL2001032854AA (testset) | CARCINOID | 0.99999 | 1e-05 | CARCINOID |
| CL2001032856AA (testset) | other | 0 | 1 | other |
| CL2001032857AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001032860AA (testset) | CARCINOID | 0.99997 | 3e-05 | CARCINOID |
| CL2001040305AA (testset) | other | 2e-05 | 0.99998 | other |
| CL2001040306AA (testset) | other | 3e-05 | 0.99997 | other |
| CL2001041708AA (testset) | other | 0 | 1 | other |
| CL2001041711AA (testset) | other | 1e-05 | 0.99999 | other |
| CL2001041716AA (testset) | other | 0 | 1 | other |
| CL2001042501AA (testset) | CARCINOID | 1 | 0 | CARCINOID |
| CL2001042505AA (testset) | other | 0.00241 | 0.99759 | other |
| CL2001042506AA (testset) | other | 0 | 1 | other |