GO:0006470

GO:0006470

protein amino acid dephosphorylation (annotated genes)

Biological Process

Parent nodes

GO:0006464	protein modification
GO:0016311	dephosphorylation

This leaf node contains 140 genes

The following 98 of these are used in classification:

	Symbol	Genename	CARCINOID score	other score
917_g_at	PTPRN	protein tyrosine phosphatase, receptor type, N	3.3501	-0.3844
36160_s_at	PTPRN2	protein tyrosine phosphatase, receptor type, N polypeptide 2	3.1526	-0.3618
916_at	PTPRN	protein tyrosine phosphatase, receptor type, N	1.833	-0.2103
1562_g_at	DUSP8	dual specificity phosphatase 8	1.3452	-0.1544
1463_at	PTPN12	protein tyrosine phosphatase, non-receptor type 12	-1.1736	0.1347
40518_at	PTPRC	protein tyrosine phosphatase, receptor type, C	-1.0837	0.1244
1496_at	PTPRA	protein tyrosine phosphatase, receptor type, A	1.0312	-0.1183
33218_at	ERBB2	v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)	-0.9148	0.105
1811_at	PTPRH	protein tyrosine phosphatase, receptor type, H	0.8459	-0.0971
1802_s_at	ERBB2	v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)	-0.8421	0.0966
32157_at	PPP1CA	protein phosphatase 1, catalytic subunit, alpha isoform	-0.83	0.0953
843_at	PTP4A1	protein tyrosine phosphatase type IVA, member 1	-0.8199	0.0941
1488_at	PTPRK	protein tyrosine phosphatase, receptor type, K	-0.8056	0.0924
41193_at	DUSP6	dual specificity phosphatase 6	-0.7508	0.0862
40520_g_at	PTPRC	protein tyrosine phosphatase, receptor type, C	-0.7351	0.0844
1150_at	PTPRE	protein tyrosine phosphatase, receptor type, E	-0.7067	0.0811
39780_at	PPP3CB	protein phosphatase 3 (formerly 2B), catalytic subunit, beta isoform (calcineurin A beta)	0.6975	-0.08
40519_at	PTPRC	protein tyrosine phosphatase, receptor type, C	-0.6955	0.0798
1561_at	DUSP8	dual specificity phosphatase 8	0.6906	-0.0792
36808_at	PTPN22	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	-0.6719	0.0771
32916_at	PTPRE	protein tyrosine phosphatase, receptor type, E	-0.6691	0.0768
1901_s_at	ERBB2	v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)	-0.6529	0.0749
529_at	DUSP5	dual specificity phosphatase 5	-0.6179	0.0709
391_at	PPP5C	protein phosphatase 5, catalytic subunit	0.6104	-0.07
1599_at	CDKN3	cyclin-dependent kinase inhibitor 3 (CDK2-associated dual specificity phosphatase)	-0.5894	0.0676
922_at	PPP2R1A	protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform	0.5836	-0.067
31892_at	PTPRM	protein tyrosine phosphatase, receptor type, M	-0.5757	0.0661
34198_at	PTPN13	protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)	-0.5365	0.0616
924_s_at	PPP2CB	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	0.5308	-0.0609
392_g_at	PPP5C	protein phosphatase 5, catalytic subunit	0.5284	-0.0606
994_at	PTPRM	protein tyrosine phosphatase, receptor type, M	-0.5164	0.0593
33413_at	PTP4A1	protein tyrosine phosphatase type IVA, member 1	-0.5141	0.059
794_at	PTPN6	protein tyrosine phosphatase, non-receptor type 6	-0.4999	0.0574
995_g_at	PTPRM	protein tyrosine phosphatase, receptor type, M	-0.4911	0.0564
38272_at	DUSP14	dual specificity phosphatase 14	-0.4811	0.0552
1760_s_at	PTPN7	protein tyrosine phosphatase, non-receptor type 7	-0.4685	0.0538
33750_at	PTPRU	protein tyrosine phosphatase, receptor type, U	-0.4656	0.0534
38277_at	PPP3CB	protein phosphatase 3 (formerly 2B), catalytic subunit, beta isoform (calcineurin A beta)	0.4478	-0.0514
34654_at	MTMR1	myotubularin related protein 1	-0.4458	0.0512
37893_at	PTPN2	protein tyrosine phosphatase, non-receptor type 2	-0.4309	0.0494
1629_s_at	PTPN13	protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)	-0.4125	0.0473
40867_at	PPP2R1A	protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform	0.3948	-0.0453
1094_g_at	PPP2R1B	protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform	0.3645	-0.0418
39835_at	SBF1	SET binding factor 1	-0.3633	0.0417
41429_at	PPP2R1B	protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform	0.3582	-0.0411
39672_at	PTPN7	protein tyrosine phosphatase, non-receptor type 7	-0.3499	0.0402
32932_at	DKFZP566K0524	DKFZP566K0524 protein	0.3407	-0.0391
39727_at	DUSP11	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	-0.3317	0.0381
41162_at	PPM1G	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	-0.3301	0.0379
801_at	PTPN14	protein tyrosine phosphatase, non-receptor type 14	-0.3053	0.035
37384_at	PPM1F	protein phosphatase 1F (PP2C domain containing)	-0.3013	0.0346
39227_at	PTPRT	protein tyrosine phosphatase, receptor type, T	0.296	-0.034
1292_at	DUSP2	dual specificity phosphatase 2	-0.2872	0.033
1347_at	CDC25B	cell division cycle 25B	-0.2669	0.0306
1093_at	PPP2R1B	protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform	0.261	-0.03
34082_at	SSH1	slingshot 1	-0.2513	0.0288
1005_at	DUSP1	dual specificity phosphatase 1	-0.2478	0.0284
32665_at	PPM1B	protein phosphatase 1B (formerly 2C), magnesium-dependent, beta isoform	0.246	-0.0282
40583_at	PTPRJ	protein tyrosine phosphatase, receptor type, J	0.2359	-0.0271
1320_at	PTPN21	protein tyrosine phosphatase, non-receptor type 21	-0.2213	0.0254
32289_at	PTPRS	protein tyrosine phosphatase, receptor type, S	0.2082	-0.0239
33453_at	PTPN18	protein tyrosine phosphatase, non-receptor type 18 (brain-derived)	0.2005	-0.023
40920_at	CDC14B	CDC14 cell division cycle 14 homolog B (S. cerevisiae)	0.1791	-0.0205
1788_s_at	DUSP4	dual specificity phosphatase 4	0.1637	-0.0188
1383_at	PPP2R2A	protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	-0.1533	0.0176
36920_at	MTM1	myotubular myopathy 1	-0.1473	0.0169
1459_at	PTPN4	protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)	0.1467	-0.0168
41167_at	PPP2R2A	protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	-0.1393	0.016
31969_i_at	PPEF2	protein phosphatase, EF hand calcium-binding domain 2	0.1358	-0.0156
1871_g_at	PTPN11	protein tyrosine phosphatase, non-receptor type 11 (Noonan syndrome 1)	0.1335	-0.0153
1888_s_at	KIT	v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog	-0.1263	0.0145
1584_at	CDC25C	cell division cycle 25C	-0.1256	0.0144
39127_f_at	PPP2R4	protein phosphatase 2A, regulatory subunit B' (PR 53)	0.1175	-0.0135
1697_s_at	PTPRJ	protein tyrosine phosphatase, receptor type, J	0.114	-0.0131
40524_at	PTPN21	protein tyrosine phosphatase, non-receptor type 21	-0.0992	0.0114
32141_at	PPM1E	protein phosphatase 1E (PP2C domain containing)	0.0991	-0.0114
39128_r_at	PPP2R4	protein phosphatase 2A, regulatory subunit B' (PR 53)	0.0938	-0.0108
31885_at	PTPN3	protein tyrosine phosphatase, non-receptor type 3	0.0846	-0.0097
37777_at	PTPRB	protein tyrosine phosphatase, receptor type, B	-0.0835	0.0096
39933_at	DUSP7	dual specificity phosphatase 7	-0.0796	0.0091
407_at	PTPRB	protein tyrosine phosphatase, receptor type, B	-0.0766	0.0088
39932_at	DUSP7	dual specificity phosphatase 7	-0.0741	0.0085
39707_at	MTMR4	myotubularin related protein 4	0.0686	-0.0079
1264_at	PTPN2	protein tyrosine phosphatase, non-receptor type 2	0.0666	-0.0076
34249_at	EPM2A	epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)	0.064	-0.0073
40582_at	PTPRJ	protein tyrosine phosphatase, receptor type, J	0.0599	-0.0069
492_g_at	PTPRG	protein tyrosine phosphatase, receptor type, G	0.0559	-0.0064
36008_at	PTP4A3	protein tyrosine phosphatase type IVA, member 3	0.0527	-0.006
38443_at	PTPN11	protein tyrosine phosphatase, non-receptor type 11 (Noonan syndrome 1)	0.046	-0.0053
31970_r_at	PPEF2	protein phosphatase, EF hand calcium-binding domain 2	0.0423	-0.0048
32199_at	PTPRO	protein tyrosine phosphatase, receptor type, O	-0.0414	0.0047
31735_at	I-4	type 1 protein phosphatase inhibitor	0.0283	-0.0032
160041_at	PTPN18	protein tyrosine phosphatase, non-receptor type 18 (brain-derived)	0.021	-0.0024
37107_at	PPM1D	protein phosphatase 1D magnesium-dependent, delta isoform	0.018	-0.0021
1460_g_at	PTPN4	protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)	0.0177	-0.002
33181_at	PPP2CA	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	0.0175	-0.002
281_s_at	PPP3CA	protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform (calcineurin A alpha)	-0.0128	0.0015
37581_at	PPP6C	protein phosphatase 6, catalytic subunit	-4e-04	0

Performance on training data

• Error rate: 0
• Performance: 0.00085
• Redundancy: 10.94102

	Sensitivity	Specificity
CARCINOID	1	1
other	1	1

Performance on test data

• Error rate: 0
• Performance: 0.00021
• Redundancy: 11.01567

	Sensitivity	Specificity
CARCINOID	1	1
other	1	1

Predictions

	Class	CARCINOID	other	Predictionn
CL2001031606AA (testset)	other	0	1	other
CL2001031607AA	other	0	1	other
CL2001031608AA	other	0	1	other
CL2001031609AA	CARCINOID	1	0	CARCINOID
CL2001031611AA	other	0	1	other
CL2001031612AA (testset)	other	0	1	other
CL2001031613AA	other	0	1	other
CL2001031615AA	other	0	1	other
CL2001031616AA	other	0	1	other
CL2001031618AA	other	0	1	other
CL2001031620AA (testset)	other	0	1	other
CL2001031621AA	other	0	1	other
CL2001031622AA (testset)	other	0	1	other
CL2001031625AA	other	0	1	other
CL2001031627AA	other	0	1	other
CL2001031628AA	other	0	1	other
CL2001031629AA	other	0	1	other
CL2001031630AA	other	0	1	other
CL2001031631AA	other	0	1	other
CL2001031632AA	other	0	1	other
CL2001031634AA	other	0	1	other
CL2001031635AA (testset)	other	0	1	other
CL2001031636AA (testset)	other	0	1	other
CL2001032002AA (testset)	other	0	1	other
CL2001032005AA (testset)	other	2e-05	0.99998	other
CL2001032008AA	other	0	1	other
CL2001032009AA (testset)	other	0	1	other
CL2001032010AA	other	0	1	other
CL2001032011AA	other	0	1	other
CL2001032012AA (testset)	other	0	1	other
CL2001032013AA (testset)	other	0	1	other
CL2001032015AA	other	0	1	other
CL2001032016AA	other	0	1	other
CL2001032019AA	other	0	1	other
CL2001032020AA (testset)	other	0	1	other
CL2001032025AA	other	0	1	other
CL2001032026AA	other	0	1	other
CL2001032027AA (testset)	other	0	1	other
CL2001032030AA	other	0	1	other
CL2001032031AA	other	0	1	other
CL2001032032AA (testset)	other	0	1	other
CL2001032034AA	other	0	1	other
CL2001032036AA	other	0	1	other
CL2001032041AA	other	0	1	other
CL2001032043AA	other	0	1	other
CL2001032044AA (testset)	CARCINOID	1	0	CARCINOID
CL2001032045AA	other	0	1	other
CL2001032046AA	other	0	1	other
CL2001032101AA	CARCINOID	1	0	CARCINOID
CL2001032102AA	other	0	1	other
CL2001032103AA	other	0	1	other
CL2001032104AA	other	0	1	other
CL2001032105AA (testset)	other	0	1	other
CL2001032107AA	other	0	1	other
CL2001032108AA	other	0	1	other
CL2001032109AA (testset)	other	0	1	other
CL2001032110AA (testset)	other	0	1	other
CL2001032111AA	other	0	1	other
CL2001032113AA	other	0.00075	0.99925	other
CL2001032114AA	other	0	1	other
CL2001032115AA	other	0	1	other
CL2001032116AA	other	0	1	other
CL2001032117AA (testset)	other	0	1	other
CL2001032121AA (testset)	other	0.00137	0.99863	other
CL2001032122AA	other	0	1	other
CL2001032124AA	CARCINOID	1	0	CARCINOID
CL2001032125AA	other	0	1	other
CL2001032127AA (testset)	CARCINOID	1	0	CARCINOID
CL2001032128AA	other	0	1	other
CL2001032129AA	other	0	1	other
CL2001032130AA (testset)	other	0	1	other
CL2001032132AA (testset)	other	0	1	other
CL2001032134AA	other	0	1	other
CL2001032135AA	other	0	1	other
CL2001032136AA	other	0	1	other
CL2001032138AA	other	0	1	other
CL2001032141AA	other	0	1	other
CL2001032142AA (testset)	other	0	1	other
CL2001032144AA	other	0	1	other
CL2001032145AA (testset)	CARCINOID	1	0	CARCINOID
CL2001032147AA	other	0	1	other
CL2001032149AA	other	0	1	other
CL2001032151AA	CARCINOID	1	0	CARCINOID
CL2001032152AA (testset)	CARCINOID	1	0	CARCINOID
CL2001032153AA	other	0	1	other
CL2001032155AA (testset)	other	0	1	other
CL2001032156AA	other	0	1	other
CL2001032202AA (testset)	other	0	1	other
CL2001032206AA	other	0	1	other
CL2001032207AA (testset)	other	0	1	other
CL2001032209AA (testset)	other	0	1	other
CL2001032210AA	CARCINOID	1	0	CARCINOID
CL2001032211AA	other	0	1	other
CL2001032212AA (testset)	other	0	1	other
CL2001032213AA (testset)	other	0	1	other
CL2001032214AA	other	0	1	other
CL2001032217AA (testset)	other	0.00562	0.99438	other
CL2001032218AA (testset)	other	0	1	other
CL2001032219AA (testset)	CARCINOID	1	0	CARCINOID
CL2001032220AA	other	0	1	other
CL2001032222AA (testset)	other	0	1	other
CL2001032229AA (testset)	other	0	1	other
CL2001032231AA	other	0	1	other
CL2001032232AA	other	0	1	other
CL2001032233AA	other	0	1	other
CL2001032238AA	CARCINOID	1	0	CARCINOID
CL2001032239AA	other	0	1	other
CL2001032240AA	other	0	1	other
CL2001032241AA (testset)	other	0	1	other
CL2001032242AA	other	0	1	other
CL2001032243AA (testset)	other	0	1	other
CL2001032248AA	other	0	1	other
CL2001032249AA	other	0	1	other
CL2001032252AA	other	0	1	other
CL2001032254AA (testset)	other	0	1	other
CL2001032255AA	other	0	1	other
CL2001032256AA (testset)	other	0	1	other
CL2001032259AA	other	0	1	other
CL2001032260AA	other	0.0553	0.9447	other
CL2001032301AA	other	0	1	other
CL2001032304AA (testset)	other	0	1	other
CL2001032305AA (testset)	other	0	1	other
CL2001032306AA	other	0	1	other
CL2001032307AA	other	0	1	other
CL2001032308AA	other	0	1	other
CL2001032309AA	other	0	1	other
CL2001032310AA	other	0	1	other
CL2001032311AA	other	0	1	other
CL2001032312AA	other	0	1	other
CL2001032313AA	other	0	1	other
CL2001032314AA	other	0	1	other
CL2001032316AA (testset)	other	0	1	other
CL2001032601AA	other	0	1	other
CL2001032602AA	other	0	1	other
CL2001032604AA	other	0	1	other
CL2001032607AA	CARCINOID	1	0	CARCINOID
CL2001032608AA	other	0	1	other
CL2001032610AA (testset)	other	0	1	other
CL2001032612AA	other	0	1	other
CL2001032613AA (testset)	other	0	1	other
CL2001032614AA (testset)	other	0	1	other
CL2001032616AA	other	0	1	other
CL2001032617AA (testset)	other	0	1	other
CL2001032620AA (testset)	other	0	1	other
CL2001032625AA	other	0	1	other
CL2001032627AA (testset)	other	0	1	other
CL2001032628AA	other	0	1	other
CL2001032629AA	CARCINOID	1	0	CARCINOID
CL2001032630AA	CARCINOID	1	0	CARCINOID
CL2001032632AA	other	0	1	other
CL2001032638AA (testset)	other	0	1	other
CL2001032640AA	other	0	1	other
CL2001032643AA	other	0	1	other
CL2001032644AA (testset)	other	0	1	other
CL2001032647AA	other	0	1	other
CL2001032701AA	other	0	1	other
CL2001032702AA (testset)	other	0	1	other
CL2001032703AA	other	0	1	other
CL2001032704AA (testset)	other	0	1	other
CL2001032706AA	other	0	1	other
CL2001032709AA	other	0	1	other
CL2001032716AA	other	0	1	other
CL2001032717AA (testset)	other	0	1	other
CL2001032718AA	other	0	1	other
CL2001032719AA (testset)	other	0	1	other
CL2001032720AA	other	0	1	other
CL2001032722AA	CARCINOID	1	0	CARCINOID
CL2001032724AA	other	0	1	other
CL2001032725AA (testset)	other	0	1	other
CL2001032727AA	other	0	1	other
CL2001032729AA (testset)	other	0	1	other
CL2001032730AA	other	0	1	other
CL2001032732AA (testset)	other	0	1	other
CL2001032733AA	other	0	1	other
CL2001032738AA	other	0	1	other
CL2001032742AA	other	0	1	other
CL2001032746AA	other	0	1	other
CL2001032747AA	other	0	1	other
CL2001032833AA	other	0	1	other
CL2001032836AA	other	0	1	other
CL2001032838AA	other	0	1	other
CL2001032839AA	other	0	1	other
CL2001032841AA	other	0	1	other
CL2001032842AA (testset)	other	0	1	other
CL2001032843AA (testset)	other	0	1	other
CL2001032845AA (testset)	other	0	1	other
CL2001032846AA	other	0	1	other
CL2001032847AA	CARCINOID	1	0	CARCINOID
CL2001032848AA (testset)	other	0	1	other
CL2001032850AA	CARCINOID	1	0	CARCINOID
CL2001032853AA (testset)	other	0	1	other
CL2001032854AA	CARCINOID	1	0	CARCINOID
CL2001032856AA	other	0	1	other
CL2001032857AA (testset)	other	0	1	other
CL2001032860AA	CARCINOID	1	0	CARCINOID
CL2001040305AA	other	0	1	other
CL2001040306AA	other	0	1	other
CL2001041708AA	other	0	1	other
CL2001041711AA (testset)	other	0	1	other
CL2001041716AA	other	0	1	other
CL2001042501AA (testset)	CARCINOID	1	0	CARCINOID
CL2001042505AA	other	0	1	other
CL2001042506AA	other	0	1	other